Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 6.3e-160 567.4 287 100.0
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.1e-116 423.7 313 73.2
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 5.6e-116 421.4 313 72.5
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 7.3e-116 421.0 310 71.0
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.4e-114 416.8 292 75.7
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.4e-113 412.1 312 69.9
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 4.1e-111 405.2 315 68.6
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 2.1e-110 402.9 314 69.4
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.3e-109 400.2 314 68.5
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 4.7e-107 391.7 324 66.4
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.0e-105 386.3 235 83.0
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 7.6e-105 384.4 310 65.5
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.1e-103 380.6 289 69.6
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.4e-103 380.2 321 68.2
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 3.5e-102 375.6 310 64.5
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.7e-101 373.2 311 64.3
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.1e-101 371.7 310 63.5
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 4.0e-98 362.1 289 64.7
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 2.6e-97 359.4 310 61.9
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 7.6e-97 357.8 259 68.7
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.3e-96 357.1 221 80.1
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 2.9e-96 355.9 221 79.6
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 9.3e-95 350.9 303 62.4
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 7.8e-94 347.8 313 60.7
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 7.8e-94 347.8 271 66.4
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 7.8e-94 347.8 209 82.8
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 3.9e-93 345.5 358 55.0
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 1.9e-92 343.2 251 71.3
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.9e-92 343.2 281 63.7
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 3.3e-92 342.4 221 78.3
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 6.2e-91 338.2 229 73.8
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 8.1e-91 337.8 227 72.2
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.4e-90 337.0 293 61.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 5.3e-90 335.1 212 76.9
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.2e-89 334.0 238 71.4
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.0e-89 333.2 245 69.0
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.4e-89 332.4 292 61.6
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 5.8e-89 331.6 312 59.3
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 5.8e-89 331.6 292 61.3
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 1.3e-88 330.5 233 69.1
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 2.9e-88 329.3 288 62.2
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 3.8e-88 328.9 289 60.6
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 3.8e-88 328.9 292 61.0
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 4.9e-88 328.6 224 71.0
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 6.4e-88 328.2 238 71.0
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 1.4e-87 327.0 293 61.4
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 2.4e-87 326.2 323 58.5
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 9.3e-87 324.3 198 78.8
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.6e-86 323.6 249 65.5
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 2.1e-86 323.2 224 71.0
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 6.0e-86 321.6 280 59.6
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.0e-85 319.3 222 70.3
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 5.1e-85 318.5 250 64.4
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 5.1e-85 318.5 311 57.2
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 6.7e-85 318.2 234 67.5
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 8.7e-85 317.8 196 85.2
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 2.5e-84 316.2 220 69.5
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 7.4e-84 314.7 258 62.4
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 9.6e-84 314.3 199 74.4
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 1.3e-83 313.9 245 64.9
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 2.1e-83 313.2 364 51.4
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 3.7e-83 312.4 234 67.1
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 4.8e-83 312.0 242 69.4
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 6.2e-83 311.6 247 64.4
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.1e-82 310.8 211 73.5
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 4.0e-82 308.9 231 68.8
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.5e-81 307.0 281 57.7
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-80 303.9 284 58.1
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 1.3e-80 303.9 284 58.1
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 1.7e-80 303.5 280 57.9
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.2e-80 303.1 223 72.6
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 3.8e-80 302.4 194 72.7
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 6.4e-80 301.6 201 74.1
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 6.4e-80 301.6 299 57.9
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 3.2e-79 299.3 211 69.2
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 3.2e-79 299.3 212 69.8
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 3.2e-79 299.3 194 78.9
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 5.5e-79 298.5 228 65.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.5e-79 298.5 228 65.8
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.2e-78 297.4 244 63.9
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.2e-78 297.4 250 60.4
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.6e-78 297.0 228 65.4
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.6e-78 297.0 202 71.8
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 2.1e-78 296.6 230 63.5
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 3.5e-78 295.8 174 83.3
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 2.3e-77 293.1 186 74.7
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 2.3e-77 293.1 186 77.4
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 2.3e-77 293.1 186 77.4
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.0e-77 292.7 221 66.1
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 3.0e-77 292.7 205 69.8
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 8.7e-77 291.2 189 74.1
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.9e-76 290.0 201 72.1
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.9e-76 290.0 189 75.7
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 2.5e-76 289.7 236 65.3
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 3.3e-76 289.3 193 75.1
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 9.6e-76 287.7 198 73.2
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 8.2e-75 284.6 188 73.9
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-74 283.9 263 57.0
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 9.0e-74 281.2 188 72.3
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.2e-73 280.8 204 68.1
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 2.6e-73 279.6 266 56.4
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 3.4e-73 279.3 188 74.5
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-72 277.3 196 69.9
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 1.3e-72 277.3 192 72.9
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 2.9e-72 276.2 169 78.1
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 6.5e-72 275.0 248 59.7
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 6.5e-72 275.0 256 57.8
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 1.1e-71 274.2 229 61.6
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 2.5e-71 273.1 212 61.8
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 4.3e-68 262.3 261 55.2
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.1e-66 257.7 160 75.6
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 4.5e-65 252.3 188 67.0
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 3.2e-63 246.1 191 63.9
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 3.2e-63 246.1 134 88.8
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 2.1e-62 243.4 197 65.5
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 2.2e-59 233.4 174 69.0
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 1.5e-57 227.3 175 66.3
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.6e-57 226.5 229 51.1
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 2.2e-56 223.4 184 63.6
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 2.5e-55 219.9 158 70.3
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 5.5e-55 218.8 156 70.5
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 9.7e-52 208.0 109 90.8
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 1.4e-50 204.1 156 67.3
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 1.0e-48 198.0 118 79.7
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 2.8e-43 179.9 93 92.5
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.3e-42 175.6 247 44.5
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 7.0e-42 175.3 131 71.8
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.2e-41 174.5 112 77.7
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.2e-39 166.4 224 49.1
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 1.6e-33 147.5 92 72.8
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.7e-32 144.1 159 49.7
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 8.8e-29 131.7 196 44.4
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 8.8e-29 131.7 123 59.3
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 3.7e-27 126.3 133 45.1
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 6.3e-27 125.6 156 40.4
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 5.4e-26 122.5 137 45.3
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 4.2e-23 112.8 76 77.6
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.9e-21 105.1 211 39.8
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 1.0e-16 91.7 85 58.8
FAN23G0109 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.5e-12 77.8 117 46.2
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 8.3e-11 72.0 43 72.1
CSS0006054 Camellia sinensis var. sinensis HOM05D043540 ORTHO05D006480 1.2e-09 68.2 61 65.6
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 7.8e-09 65.5 61 50.8
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 1.7e-08 64.3 108 46.3
CSS0048018 Camellia sinensis var. sinensis HOM05D043540 ORTHO05D006480 3.9e-08 63.2 61 62.3
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 1.5e-07 61.2 56 57.1
PGSC0003DMG402012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 4.7e-06 56.2 67 47.8


User provided reference genes

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