Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 4.7e-58 227.6 113 100.0
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 1.2e-21 106.7 79 68.4
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 2.0e-21 105.9 81 64.2
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 3.3e-19 98.6 93 60.2
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 7.3e-19 97.4 78 62.8
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 7.3e-19 97.4 78 65.4
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 7.3e-19 97.4 75 72.0
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 9.5e-19 97.1 97 57.7
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 9.5e-19 97.1 84 63.1
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.2e-18 96.7 80 63.8
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 2.1e-18 95.9 76 67.1
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 2.8e-18 95.5 79 59.5
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 2.8e-18 95.5 75 70.7
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 3.6e-18 95.1 94 55.3
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 3.6e-18 95.1 78 62.8
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 4.7e-18 94.7 75 72.0
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 4.7e-18 94.7 84 61.9
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 6.2e-18 94.4 78 62.8
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 8.0e-18 94.0 103 50.5
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 8.0e-18 94.0 81 60.5
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.8e-17 92.8 75 61.3
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 1.8e-17 92.8 94 61.7
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 1.8e-17 92.8 90 58.9
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 1.8e-17 92.8 96 57.3
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 2.3e-17 92.4 78 62.8
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 2.3e-17 92.4 97 55.7
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 2.3e-17 92.4 98 53.1
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 3.1e-17 92.0 73 68.5
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 4.0e-17 91.7 84 60.7
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 5.2e-17 91.3 91 54.9
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 6.8e-17 90.9 89 52.8
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 8.9e-17 90.5 103 49.5
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 1.2e-16 90.1 85 52.9
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.5e-16 89.7 78 57.7
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.5e-16 89.7 97 53.6
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.5e-16 89.7 90 56.7
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 2.0e-16 89.4 74 63.5
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 2.0e-16 89.4 106 48.1
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 2.0e-16 89.4 94 55.3
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 2.6e-16 89.0 107 48.6
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 2.6e-16 89.0 89 51.7
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 3.4e-16 88.6 84 59.5
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 4.4e-16 88.2 85 52.9
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 4.4e-16 88.2 93 59.1
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 5.8e-16 87.8 90 58.9
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 5.8e-16 87.8 97 52.6
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 7.5e-16 87.4 81 58.0
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 9.8e-16 87.0 75 61.3
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.3e-15 86.7 94 51.1
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 1.7e-15 86.3 89 50.6
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 2.9e-15 85.5 85 50.6
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 2.9e-15 85.5 97 51.5
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 4.9e-15 84.7 86 55.8
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 4.9e-15 84.7 81 55.6
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 8.3e-15 84.0 71 66.2
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 1.4e-14 83.2 87 52.9
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 1.4e-14 83.2 87 52.9
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 1.4e-14 83.2 90 51.1
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 1.9e-14 82.8 96 53.1
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 4.1e-14 81.6 98 48.0
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 9.2e-14 80.5 82 51.2
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.2e-13 80.1 75 57.3
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 1.2e-13 80.1 95 48.4
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 1.6e-13 79.7 85 52.9
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 2.7e-13 79.0 103 47.6
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 3.5e-13 78.6 77 58.4
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 7.8e-13 77.4 94 51.1
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 7.8e-13 77.4 56 67.9
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.0e-12 77.0 86 52.3
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 1.3e-12 76.6 115 40.0
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 1.3e-12 76.6 59 64.4
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 1.3e-12 76.6 77 57.1
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 2.3e-12 75.9 77 50.6
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 2.3e-12 75.9 92 50.0
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.9e-12 75.1 77 57.1
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.9e-12 75.1 77 57.1
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.6e-12 74.3 77 57.1
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.6e-12 74.3 77 57.1
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 8.6e-12 73.9 74 51.4
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 8.6e-12 73.9 79 53.2
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 1.1e-11 73.6 85 50.6
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 1.1e-11 73.6 79 46.8
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 1.1e-11 73.6 92 48.9
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 1.1e-11 73.6 61 59.0
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 1.5e-11 73.2 65 60.0
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 1.9e-11 72.8 82 52.4
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.9e-11 72.8 63 66.7
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 2.5e-11 72.4 77 55.8
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.5e-11 72.4 77 55.8
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.5e-11 72.4 77 55.8
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 2.5e-11 72.4 95 44.2
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 3.3e-11 72.0 67 58.2
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 3.3e-11 72.0 61 55.7
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 3.3e-11 72.0 61 55.7
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 3.3e-11 72.0 69 56.5
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 3.3e-11 72.0 69 56.5
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 4.3e-11 71.6 72 52.8
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 4.3e-11 71.6 60 56.7
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 7.3e-11 70.9 88 48.9
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 9.5e-11 70.5 74 54.1
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.8e-10 68.9 73 53.4
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 8.1e-10 67.4 59 59.3
ATR0767G212 Amborella trichopoda HOM05D006948 ORTHO05D008703 2.3e-09 65.9 62 51.6
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 2.3e-09 65.9 72 51.4
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 2.3e-09 65.9 54 64.8
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 4.0e-09 65.1 67 52.2
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 4.4e-08 61.6 54 63.0
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 4.4e-08 61.6 68 51.5
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 9.9e-08 60.5 62 51.6
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 9.9e-08 60.5 62 51.6
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 6.4e-07 57.8 50 62.0
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 5.4e-06 54.7 74 45.9


User provided reference genes

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