Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 6.2e-91 337.4 168 100.0
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 4.3e-76 288.1 164 87.2
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 4.3e-76 288.1 168 82.1
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 5.6e-76 287.7 168 85.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.3e-75 286.6 168 85.1
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 7.6e-73 277.3 166 80.1
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.7e-72 276.2 168 79.2
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.9e-72 275.4 168 78.0
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 4.9e-72 274.6 166 80.7
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.4e-71 273.1 169 78.1
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.9e-71 272.7 165 79.4
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 7.1e-71 270.8 168 77.4
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 7.1e-71 270.8 168 80.4
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 7.1e-71 270.8 168 76.8
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.7e-70 268.9 168 77.4
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 2.7e-70 268.9 168 79.2
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.3e-69 266.5 163 77.3
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 3.0e-69 265.4 168 76.8
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.9e-69 265.0 168 76.2
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 3.9e-69 265.0 164 79.9
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.9e-69 265.0 168 79.2
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 6.7e-69 264.2 168 76.2
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 8.7e-69 263.8 163 76.7
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.9e-68 262.7 168 76.2
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 2.5e-68 262.3 165 77.0
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.5e-68 262.3 163 76.1
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 4.3e-68 261.5 168 73.2
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 5.7e-68 261.2 168 76.8
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 3.7e-67 258.5 165 74.5
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 6.3e-67 257.7 164 76.8
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.4e-66 255.8 169 76.3
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 3.1e-66 255.4 163 74.8
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 3.1e-66 255.4 166 75.9
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 3.1e-66 255.4 165 75.2
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 5.3e-66 254.6 163 74.8
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 5.3e-66 254.6 172 75.0
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 5.3e-66 254.6 158 79.1
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 4.5e-65 251.5 166 75.3
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 7.6e-65 250.8 166 74.7
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.0e-64 250.4 165 73.3
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.3e-64 250.0 165 73.9
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 2.9e-64 248.8 168 73.2
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.9e-64 248.8 166 74.1
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 3.8e-64 248.4 165 73.9
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.9e-63 246.1 171 71.9
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.9e-63 246.1 167 73.1
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.9e-63 246.1 165 74.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.5e-63 245.7 171 71.9
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.5e-63 245.7 171 71.3
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 2.5e-63 245.7 164 73.8
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 3.2e-63 245.4 164 73.8
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.2e-63 245.0 168 68.5
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 5.5e-63 244.6 165 73.9
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 6.1e-62 241.1 163 74.2
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 7.9e-62 240.7 168 69.0
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 1.0e-61 240.4 165 72.7
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.8e-61 239.6 164 71.3
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 2.3e-61 239.2 168 69.0
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.3e-61 239.2 166 72.9
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 3.0e-61 238.8 163 74.8
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 5.1e-61 238.0 172 68.6
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 2.5e-60 235.7 168 67.9
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.5e-60 235.7 168 67.9
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 3.3e-60 235.3 168 67.3
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 4.3e-60 235.0 164 71.3
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 4.3e-60 235.0 156 75.6
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.2e-59 232.6 163 69.9
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.8e-59 231.5 171 66.1
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 6.3e-59 231.1 168 70.2
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 8.2e-59 230.7 168 66.7
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.1e-58 230.3 163 69.3
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 5.3e-58 228.0 172 70.9
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.5e-57 226.5 168 68.5
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 1.0e-56 223.8 165 66.7
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 2.9e-56 222.2 164 71.3
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.9e-56 222.2 167 68.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 8.5e-56 220.7 164 70.1
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.4e-55 219.9 167 67.7
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.9e-55 219.5 158 69.6
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.9e-55 219.5 164 70.7
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.9e-55 219.5 164 70.7
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 2.5e-55 219.2 163 68.7
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.2e-55 218.4 164 70.1
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 5.5e-55 218.0 166 68.7
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 9.4e-55 217.2 164 70.1
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.6e-54 216.5 167 66.5
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.6e-54 216.5 164 70.1
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 6.1e-54 214.5 167 64.7
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 6.1e-54 214.5 167 64.7
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.0e-53 213.8 167 64.7
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.0e-53 213.8 164 70.1
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.1e-53 211.5 168 64.9
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 2.5e-52 209.1 131 76.3
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 7.4e-52 207.6 158 64.6
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 9.7e-52 207.2 167 65.3
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 2.2e-51 206.1 162 61.7
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 2.2e-51 206.1 169 62.1
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.2e-51 206.1 168 64.3
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 2.8e-51 205.7 169 63.9
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.8e-51 205.7 169 63.9
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.8e-51 205.7 169 63.9
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 2.8e-51 205.7 169 63.9
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.8e-51 205.7 171 63.7
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 3.7e-51 205.3 169 63.9
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 4.8e-51 204.9 169 63.3
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 6.3e-51 204.5 169 63.3
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.4e-50 203.4 153 66.7
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.9e-49 198.0 146 65.1
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 7.2e-47 191.0 125 73.6
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 6.1e-46 188.0 167 58.7
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.8e-45 186.4 135 69.6
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.8e-45 186.4 159 59.7
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.3e-45 186.0 170 59.4
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 3.9e-45 185.3 127 77.2
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.5e-44 183.3 167 58.7
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.5e-44 183.3 167 58.7
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.5e-44 183.3 170 58.8
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.0e-44 183.0 170 58.8
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.4e-42 176.8 161 58.4
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 1.0e-40 170.6 168 54.8
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 5.0e-40 168.3 128 66.4
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.5e-39 166.0 166 53.0
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.5e-39 166.0 125 62.4
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 2.3e-37 159.5 178 55.1
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 5.7e-36 154.8 161 46.0
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.7e-35 153.3 129 61.2
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.7e-35 153.3 133 54.9
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.4e-34 150.2 114 65.8
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.1e-34 149.1 155 52.9
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 4.1e-34 148.7 99 71.7
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 4.1e-34 148.7 171 50.3
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 5.3e-34 148.3 156 48.1
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 7.7e-33 144.4 121 61.2
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.3e-32 143.7 117 59.8
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.2e-32 142.9 126 59.5
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.8e-32 142.1 159 47.8
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.5e-28 130.2 163 48.5
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.4e-28 128.6 89 70.8
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 9.8e-28 127.5 133 47.4
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.7e-27 125.6 121 46.3
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 5.4e-26 121.7 81 72.8
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 1.2e-25 120.6 124 43.5
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 2.7e-25 119.4 145 47.6
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 2.2e-24 116.3 74 74.3
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.3e-21 106.3 61 85.2
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.2e-21 105.1 66 80.3
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 4.4e-20 102.1 63 69.8
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 9.2e-18 94.4 102 43.1
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 2.0e-17 93.2 68 70.6
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.7e-17 92.8 64 71.9
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.8e-16 89.0 61 73.8
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.6e-16 87.8 57 77.2
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.6e-16 87.8 57 77.2
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.1e-15 87.4 80 53.8
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.2e-14 84.0 53 77.4
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.8e-14 82.8 74 48.6
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 3.6e-14 82.4 62 66.1
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.8e-13 80.1 81 53.1
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 8.9e-13 77.8 115 39.1
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.3e-11 73.9 44 77.3
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.9e-11 72.0 89 51.7
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 3.2e-10 69.3 63 44.4
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 7.8e-09 64.7 116 37.9
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.3e-08 63.9 80 37.5
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.7e-08 63.5 55 41.8
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 5.0e-08 62.0 60 55.0
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 9.5e-07 57.8 105 33.3


User provided reference genes

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