Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43520 Davidia involucrata HOM05D000827 ORTHO05D001318 1.6e-36 156.0 105 100.0
CSS0035225 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 2.7e-20 102.1 98 74.5
CSS0014939 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 3.6e-20 101.7 103 75.7
Dinv43960 Davidia involucrata HOM05D000827 ORTHO05D001318 3.4e-18 95.1 99 75.8
HanXRQChr01g0018471 Helianthus annuus HOM05D000827 ORTHO05D001318 3.7e-17 91.7 104 60.6
TAR629G0081 Trochodendron aralioides HOM05D000827 ORTHO05D001318 4.8e-17 91.3 95 54.7
TAR636G2815 Trochodendron aralioides HOM05D000827 ORTHO05D001318 1.1e-16 90.1 96 52.1
Actinidia21589 Actinidia chinensis HOM05D005695 ORTHO05D007810 1.8e-16 89.4 101 64.4
Actinidia31732 Actinidia chinensis HOM05D000827 ORTHO05D001318 1.6e-15 86.3 98 50.0
vmacro13599 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 2.2e-14 82.4 46 80.4
Manes.09G133600 Manihot esculenta HOM05D000827 ORTHO05D001318 1.5e-13 79.7 94 53.2
Nitab4.5_0006785g0040 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.5e-13 79.7 93 62.4
Nitab4.5_0000792g0150 Nicotiana tabacum HOM05D000827 ORTHO05D001318 5.5e-13 77.8 101 59.4
Ciclev10033040m.g Citrus clementina HOM05D000827 ORTHO05D001318 1.6e-12 76.3 98 59.2
ClCG05G002470 Citrullus lanatus HOM05D000827 ORTHO05D001318 3.6e-12 75.1 106 44.3
TWI32G0689 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 3.6e-12 75.1 99 50.5
MELO3C006211.2 Cucumis melo HOM05D000827 ORTHO05D001318 1.0e-11 73.6 107 44.9
TWI34G0874 Tripterygium wilfordii HOM05D000827 ORTHO05D001318 1.4e-11 73.2 95 43.2
Nn1g09343 Nelumbo nucifera HOM05D000827 ORTHO05D001318 1.8e-11 72.8 94 53.2
Atru.chr2.1633 Acer truncatum HOM05D000827 ORTHO05D001318 2.3e-11 72.4 100 43.0
ATR0568G208 Amborella trichopoda HOM05D000827 ORTHO05D001318 2.3e-11 72.4 102 45.1
Dinv37426 Davidia involucrata HOM05D000827 ORTHO05D001318 2.3e-11 72.4 98 45.9
PSO017G6582 Papaver somniferum HOM05D000827 ORTHO05D001318 2.3e-11 72.4 96 46.9
PSO063G1923 Papaver somniferum HOM05D000827 ORTHO05D001318 2.3e-11 72.4 96 46.9
Peaxi162Scf00907g00019 Petunia axillaris HOM05D000827 ORTHO05D001318 2.3e-11 72.4 47 68.1
CSS0035652 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 4.0e-11 71.6 43 69.8
PGR042G3744 Punica granatum HOM05D000827 ORTHO05D001318 4.0e-11 71.6 110 48.2
PGSC0003DMG400018478 Solanum tuberosum HOM05D000827 ORTHO05D001318 4.0e-11 71.6 99 44.4
CsaV3_3G009900 Cucumis sativus L. HOM05D000827 ORTHO05D001318 6.8e-11 70.9 108 43.5
Nitab4.5_0000030g0470 Nicotiana tabacum HOM05D000827 ORTHO05D001318 6.8e-11 70.9 99 45.5
Actinidia05830 Actinidia chinensis HOM05D000827 ORTHO05D001318 8.8e-11 70.5 98 45.9
Nitab4.5_0001175g0150 Nicotiana tabacum HOM05D000827 ORTHO05D001318 8.8e-11 70.5 99 49.5
Rhsim07G0047800 Rhododendron simsii HOM05D000827 ORTHO05D001318 8.8e-11 70.5 41 78.0
THA.LOC104820816 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 8.8e-11 70.5 97 43.3
CSS0045636 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 1.5e-10 69.7 43 67.4
Sopen08g001620 Solanum pennellii HOM05D000827 ORTHO05D001318 1.5e-10 69.7 99 42.4
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 1.5e-10 69.7 99 38.4
Carub.0003s0275 Capsella rubella HOM05D000827 ORTHO05D001318 2.6e-10 68.9 110 46.4
ECA248G2256 Erigeron canadensis HOM05D000827 ORTHO05D001318 2.6e-10 68.9 102 45.1
Solyc08g005590.4 Solanum lycopersicum HOM05D000827 ORTHO05D001318 2.6e-10 68.9 99 42.4
Aa31LG5G14100 Aethionema arabicum HOM05D000827 ORTHO05D001318 3.4e-10 68.6 101 51.5
AT3G03590 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 3.4e-10 68.6 100 50.0
Sopen08g024030 Solanum pennellii HOM05D000827 ORTHO05D001318 3.4e-10 68.6 99 52.5
PGSC0003DMG400001965 Solanum tuberosum HOM05D000827 ORTHO05D001318 3.4e-10 68.6 99 52.5
CAN.G930.2 Capsicum annuum HOM05D000827 ORTHO05D001318 4.4e-10 68.2 99 42.4
COL.COLO4_21419 Corchorus olitorius HOM05D000827 ORTHO05D001318 4.4e-10 68.2 109 39.4
Manes.08G156400 Manihot esculenta HOM05D000827 ORTHO05D001318 4.4e-10 68.2 95 41.1
A05p43720 Brassica napus HOM05D000827 ORTHO05D001318 5.7e-10 67.8 108 55.6
Cpa.g.sc73.28 Carica papaya HOM05D000827 ORTHO05D001318 5.7e-10 67.8 102 58.8
Nitab4.5_0002244g0100 Nicotiana tabacum HOM05D000827 ORTHO05D001318 5.7e-10 67.8 99 54.5
Rhsim11G0036900 Rhododendron simsii HOM05D000827 ORTHO05D001318 5.7e-10 67.8 98 43.9
GSVIVG01019325001 Vitis vinifera HOM05D000827 ORTHO05D001318 5.7e-10 67.8 44 70.5
ClCG06G000610 Citrullus lanatus HOM05D000827 ORTHO05D001318 7.5e-10 67.4 98 37.8
Solyc08g075400.3 Solanum lycopersicum HOM05D000827 ORTHO05D001318 7.5e-10 67.4 99 42.4
Cc08_g05790 Coffea canephora HOM05D000827 ORTHO05D001318 9.8e-10 67.0 100 41.0
COL.COLO4_21418 Corchorus olitorius HOM05D000827 ORTHO05D001318 9.8e-10 67.0 109 52.3
Oeu020239.1 Olea europaea HOM05D000827 ORTHO05D001318 9.8e-10 67.0 103 52.4
Thecc.05G234600 Theobroma cacao HOM05D000827 ORTHO05D001318 9.8e-10 67.0 111 46.8
MSTRG.20628 Avicennia marina HOM05D000827 ORTHO05D001318 1.3e-09 66.6 99 44.4
Gohir.D11G237200 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.3e-09 66.6 113 40.7
Gorai.007G250300 Gossypium raimondii HOM05D000827 ORTHO05D001318 1.3e-09 66.6 113 39.8
Sabra13G0061500 Salix brachista HOM05D000827 ORTHO05D001318 1.3e-09 66.6 95 53.7
vmacro00092 Vaccinium macrocarpon HOM05D000827 ORTHO05D001318 1.3e-09 66.6 46 71.7
CDE02G1634 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 1.7e-09 66.2 94 40.4
Thhalv10017454m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 1.7e-09 66.2 98 41.8
QL04p053399 Quercus lobata HOM05D000827 ORTHO05D001318 1.7e-09 66.2 109 51.4
Gohir.A08G149400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 2.2e-09 65.9 98 45.9
BraA05t23111Z Brassica rapa HOM05D000827 ORTHO05D001318 2.8e-09 65.5 117 47.0
HanXRQChr01g0025031 Helianthus annuus HOM05D000827 ORTHO05D001318 2.8e-09 65.5 46 65.2
Potri.013G070600 Populus trichocarpa HOM05D000827 ORTHO05D001318 2.8e-09 65.5 95 56.8
AUR62015622 Chenopodium quinoa HOM05D000827 ORTHO05D001318 3.7e-09 65.1 105 39.0
Thhalv10021710m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 3.7e-09 65.1 46 60.9
THA.LOC104814391 Tarenaya hassleriana HOM05D000827 ORTHO05D001318 3.7e-09 65.1 98 40.8
Gorai.004G177900 Gossypium raimondii HOM05D000827 ORTHO05D001318 4.9e-09 64.7 98 42.9
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 4.9e-09 64.7 108 41.7
Sed0016100 Sechium edule HOM05D000827 ORTHO05D001318 4.9e-09 64.7 100 40.0
AL3G13360 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 1.1e-08 63.5 114 50.0
Cfa012293 Carpinus fangiana HOM05D000827 ORTHO05D001318 1.1e-08 63.5 92 40.2
Lsat_1_v5_gn_6_17261 Lactuca sativa HOM05D000827 ORTHO05D001318 1.1e-08 63.5 99 50.5
Nitab4.5_0016158g0010 Nicotiana tabacum HOM05D000827 ORTHO05D001318 1.1e-08 63.5 99 56.6
Peaxi162Scf00045g00722 Petunia axillaris HOM05D000827 ORTHO05D001318 1.4e-08 63.2 99 58.6
Peaxi162Scf00193g00721 Petunia axillaris HOM05D000827 ORTHO05D001318 1.4e-08 63.2 43 69.8
SGA_v2.0_scaffold98G29374 Striga asiatica HOM05D000827 ORTHO05D001318 1.4e-08 63.2 98 42.9
AL4G31640 Arabidopsis lyrata HOM05D000827 ORTHO05D001318 1.8e-08 62.8 98 41.8
BcaC05g29864 Brassica carinata HOM05D000827 ORTHO05D001318 1.8e-08 62.8 46 63.0
C05p63300 Brassica napus HOM05D000827 ORTHO05D001318 1.8e-08 62.8 46 63.0
BolC5t34993H Brassica oleracea HOM05D000827 ORTHO05D001318 1.8e-08 62.8 46 63.0
Carub.0004s1729 Capsella rubella HOM05D000827 ORTHO05D001318 1.8e-08 62.8 98 38.8
Gohir.D08G238400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.8e-08 62.8 45 62.2
Prupe.2G106900 Prunus persica HOM05D000827 ORTHO05D001318 1.8e-08 62.8 105 51.4
RcHm_v2.0_Chr1g0340731 Rosa chinensis HOM05D000827 ORTHO05D001318 1.8e-08 62.8 105 58.1
CiPaw.12G054400 Carya illinoinensis HOM05D000827 ORTHO05D001318 2.4e-08 62.4 100 43.0
Migut.B01419 Erythranthe guttata HOM05D000827 ORTHO05D001318 2.4e-08 62.4 101 38.6
Gohir.D08G170400 Gossypium hirsutum HOM05D000827 ORTHO05D001318 2.4e-08 62.4 98 40.8
Gorai.004G253900 Gossypium raimondii HOM05D000827 ORTHO05D001318 2.4e-08 62.4 45 62.2
Cfa003700 Carpinus fangiana HOM05D000827 ORTHO05D001318 3.1e-08 62.0 116 52.6
Cc02_g26480 Coffea canephora HOM05D000827 ORTHO05D001318 3.1e-08 62.0 51 58.8
Duzib177G0432 Durio zibethinus HOM05D000827 ORTHO05D001318 3.1e-08 62.0 43 62.8
Migut.E01374 Erythranthe guttata HOM05D000827 ORTHO05D001318 3.1e-08 62.0 44 61.4
CDE09G0627 Ceratophyllum demersum HOM05D000827 ORTHO05D001318 4.1e-08 61.6 94 56.4
SalBow5G5239 Salvia bowleyana HOM05D000827 ORTHO05D001318 4.1e-08 61.6 98 43.9
Sp3g02570 Schrenkiella parvula HOM05D000827 ORTHO05D001318 4.1e-08 61.6 107 48.6
BcaC05g30265 Brassica carinata HOM05D000827 ORTHO05D001318 5.4e-08 61.2 116 37.1
Atru.chr8.2652 Acer truncatum HOM05D000827 ORTHO05D001318 7.0e-08 60.8 43 65.1
CSS0043160 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D001318 7.0e-08 60.8 99 54.5
CARHR077600 Cardamine hirsuta HOM05D000827 ORTHO05D001318 7.0e-08 60.8 109 46.8
Duzib177G0213 Durio zibethinus HOM05D000827 ORTHO05D001318 7.0e-08 60.8 43 60.5
ECA233G5913 Erigeron canadensis HOM05D000827 ORTHO05D001318 7.0e-08 60.8 47 59.6
CANSAT80G2464 Cannabis sativa HOM05D000827 ORTHO05D001318 9.2e-08 60.5 95 42.1
COL.COLO4_11280 Corchorus olitorius HOM05D000827 ORTHO05D001318 9.2e-08 60.5 95 35.8
Lsat_1_v5_gn_1_89320 Lactuca sativa HOM05D000827 ORTHO05D001318 1.2e-07 60.1 91 64.8
Lj2g0023362 Lotus japonicus HOM05D000827 ORTHO05D001318 1.2e-07 60.1 41 68.3
PGR042G0057 Punica granatum HOM05D000827 ORTHO05D001318 1.2e-07 60.1 40 67.5
Duzib205G1900 Durio zibethinus HOM05D000827 ORTHO05D001318 1.6e-07 59.7 98 36.7
GSVIVG01036871001 Vitis vinifera HOM05D000827 ORTHO05D001318 1.6e-07 59.7 95 41.1
Hma1.2p1_0680F.1_g202390 Hydrangea macrophylla HOM05D000827 ORTHO05D001318 2.0e-07 59.3 96 41.7
Aa31LG9G15740 Aethionema arabicum HOM05D000827 ORTHO05D001318 2.7e-07 58.9 40 67.5
AT2G35605 Arabidopsis thaliana HOM05D000827 ORTHO05D001318 2.7e-07 58.9 94 38.3
Haze_15786 Corylus avellana HOM05D000827 ORTHO05D001318 2.7e-07 58.9 44 56.8
DCAR_004528 Daucus carota HOM05D000827 ORTHO05D001318 2.7e-07 58.9 41 61.0
Ciclev10013159m.g Citrus clementina HOM05D000827 ORTHO05D001318 4.5e-07 58.2 95 37.9
Glyma.11G090400 Glycine max HOM05D000827 ORTHO05D001318 4.5e-07 58.2 49 61.2
Ca_25044_v3 Cicer arietinum L. HOM05D000827 ORTHO05D001318 5.9e-07 57.8 97 40.2
CsaV3_6G006380 Cucumis sativus L. HOM05D000827 ORTHO05D001318 5.9e-07 57.8 101 39.6
MD07G1081700 Malus domestica HOM05D000827 ORTHO05D001318 5.9e-07 57.8 46 56.5
MSTRG.17081 Avicennia marina HOM05D000827 ORTHO05D001318 7.7e-07 57.4 98 48.0
Hund14301 Selenicereus undatus HOM05D002348 ORTHO05D002512 1.0e-06 57.0 39 71.8
TAR628G1002 Trochodendron aralioides HOM05D000827 ORTHO05D001318 1.0e-06 57.0 46 52.2
FAN10G1218 Fragaria x ananassa HOM05D000827 ORTHO05D001318 1.3e-06 56.6 105 57.1
SEGI_40966 Sequoiadendron giganteum HOM05D000827 ORTHO05D001318 1.3e-06 56.6 40 60.0
Sc22g0002230 Simmondsia chinensis HOM05D000827 ORTHO05D001318 1.3e-06 56.6 44 59.1
Thecc.03G319100 Theobroma cacao HOM05D000827 ORTHO05D001318 1.3e-06 56.6 98 34.7
Thhalv10008891m.g Eutrema salsugineum HOM05D000827 ORTHO05D001318 1.7e-06 56.2 98 36.7
Gohir.A03G184500 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.7e-06 56.2 47 53.2
Gohir.D02G206000 Gossypium hirsutum HOM05D000827 ORTHO05D001318 1.7e-06 56.2 47 53.2
QL11p032161 Quercus lobata HOM05D000827 ORTHO05D001318 1.7e-06 56.2 51 45.1
Eucgr.D01092 Eucalyptus grandis HOM05D000827 ORTHO05D001318 2.3e-06 55.8 99 59.6
Lalb_Chr16g0380361 Lupinus albus HOM05D000827 ORTHO05D001318 2.3e-06 55.8 40 65.0
Nn1g04640 Nelumbo nucifera HOM05D000827 ORTHO05D001318 2.3e-06 55.8 46 52.2
Psat2g145520 Pisum sativum HOM05D000827 ORTHO05D001318 2.3e-06 55.8 40 62.5
FAN01G3073 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.9e-06 55.5 104 54.8
MD02G1231800 Malus domestica HOM05D000827 ORTHO05D001318 2.9e-06 55.5 46 54.3
CARHR129790 Cardamine hirsuta HOM05D000827 ORTHO05D001318 3.8e-06 55.1 99 35.4
TPR.G8987 Trifolium pratense HOM05D000827 ORTHO05D001318 3.8e-06 55.1 40 62.5
Carub.0001s3006 Capsella rubella HOM05D000827 ORTHO05D001318 5.0e-06 54.7 98 39.8
MELO3C022482.2 Cucumis melo HOM05D000827 ORTHO05D001318 5.0e-06 54.7 101 35.6
FAN03G1816 Fragaria x ananassa HOM05D000827 ORTHO05D001318 5.0e-06 54.7 110 53.6
Glyma.01G154200 Glycine max HOM05D000827 ORTHO05D001318 5.0e-06 54.7 46 60.9
Lalb_Chr05g0215071 Lupinus albus HOM05D000827 ORTHO05D001318 5.0e-06 54.7 87 42.5
Hund06188 Selenicereus undatus HOM05D000827 ORTHO05D001576 5.0e-06 54.7 40 62.5
arahy.Tifrunner.gnm1.ann1.046HV4 Arachis hypogaea HOM05D000827 ORTHO05D001318 6.6e-06 54.3 48 58.3
arahy.Tifrunner.gnm1.ann1.2I1ZFA Arachis hypogaea HOM05D000827 ORTHO05D001318 6.6e-06 54.3 48 58.3
BcaB03g13793 Brassica carinata HOM05D000827 ORTHO05D001318 6.6e-06 54.3 98 38.8
AUR62038273 Chenopodium quinoa HOM05D000827 ORTHO05D001318 6.6e-06 54.3 43 48.8
unitig_0.g1359 Utricularia gibba HOM05D000827 ORTHO05D001318 6.6e-06 54.3 46 54.3
unitig_736.g22655 Utricularia gibba HOM05D000827 ORTHO05D001576 6.6e-06 54.3 40 62.5
A05p25580 Brassica napus HOM05D000827 ORTHO05D001318 8.6e-06 53.9 98 38.8
BraA05t21440Z Brassica rapa HOM05D000827 ORTHO05D001318 8.6e-06 53.9 98 38.8


User provided reference genes

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