Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 6.0e-258 893.6 452 100.0
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.6e-216 755.4 452 83.6
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 4.4e-216 754.6 466 80.9
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 2.2e-215 752.3 452 83.2
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.3e-212 743.0 452 82.3
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 5.0e-212 741.1 452 81.9
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.5e-211 739.6 452 81.2
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.0e-208 729.2 452 80.5
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.4e-208 728.4 452 80.1
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 4.4e-208 728.0 429 84.8
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.3e-204 715.7 450 79.8
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 5.0e-204 714.5 451 78.3
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.8e-201 706.1 450 78.9
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 8.6e-196 687.2 448 75.9
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 1.5e-195 686.4 448 75.7
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 7.3e-195 684.1 456 74.3
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 3.6e-194 681.8 456 74.3
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 8.9e-193 677.2 448 75.4
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.5e-192 676.4 448 74.6
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.0e-192 676.0 458 73.6
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.0e-192 676.0 448 73.9
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.0e-192 676.0 448 72.8
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.6e-192 675.6 440 74.8
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.6e-192 675.6 418 81.1
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 7.5e-192 674.1 448 75.0
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 9.8e-192 673.7 450 74.7
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.3e-191 673.3 440 73.0
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 2.9e-191 672.2 448 74.6
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 2.9e-191 672.2 450 74.7
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 3.7e-191 671.8 473 71.0
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 8.3e-191 670.6 448 74.3
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.1e-190 670.2 448 74.6
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.4e-190 669.8 450 74.9
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.4e-190 669.8 454 75.3
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 4.1e-190 668.3 442 75.8
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.3e-188 662.5 454 74.0
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 3.0e-188 662.1 462 71.4
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 5.0e-188 661.4 450 72.7
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 5.0e-188 661.4 452 73.9
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.1e-187 660.2 448 73.0
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 2.5e-187 659.1 450 74.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 3.3e-187 658.7 451 73.8
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 3.3e-187 658.7 451 73.8
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 9.5e-187 657.1 448 72.8
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.8e-186 655.6 451 72.3
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 3.6e-186 655.2 448 73.2
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.4e-185 653.3 478 69.9
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 3.1e-185 652.1 448 72.8
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 4.0e-185 651.7 478 69.7
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 4.0e-185 651.7 445 73.9
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 2.0e-184 649.4 448 73.4
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.3e-183 646.7 450 72.4
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.1e-182 643.7 448 70.8
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.4e-182 643.3 450 71.8
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 2.4e-182 642.5 454 70.7
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 4.1e-182 641.7 450 71.3
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 2.1e-181 639.4 467 70.2
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.1e-181 639.4 450 72.2
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 7.8e-181 637.5 448 70.5
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 1.7e-180 636.3 450 70.4
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 6.6e-180 634.4 398 78.1
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 5.6e-179 631.3 444 70.7
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.1e-178 629.4 452 70.6
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.8e-178 629.0 449 69.9
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.1e-177 627.1 445 70.8
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 8.9e-177 624.0 448 68.3
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.2e-176 623.6 394 77.7
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 1.5e-176 623.2 447 70.7
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 7.6e-176 620.9 448 67.9
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.2e-175 619.4 448 67.9
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 6.4e-175 617.8 448 67.4
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 6.4e-175 617.8 549 60.1
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.4e-174 616.7 401 75.3
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.4e-174 616.7 449 67.9
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.2e-174 615.5 451 68.3
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 7.1e-174 614.4 456 67.5
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.6e-173 613.2 493 64.7
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.1e-173 612.8 449 67.0
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.1e-173 612.8 451 67.8
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.7e-173 612.5 449 67.3
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 4.6e-173 611.7 449 67.3
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 4.6e-173 611.7 449 67.3
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 4.6e-173 611.7 449 67.0
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 6.0e-173 611.3 452 67.7
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 6.0e-173 611.3 449 67.7
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 6.0e-173 611.3 449 67.7
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.3e-172 610.1 453 67.8
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.3e-172 609.4 447 68.9
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 3.0e-172 609.0 448 68.3
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.6e-172 607.8 451 67.2
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 8.7e-172 607.4 461 66.8
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 1.5e-171 606.7 449 66.8
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.9e-171 606.3 449 67.0
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 2.5e-171 605.9 452 67.3
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 2.5e-171 605.9 453 67.3
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.5e-171 605.9 448 69.0
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 9.6e-171 604.0 453 67.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 9.6e-171 604.0 453 67.3
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 9.6e-171 604.0 453 67.3
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 4.7e-170 601.7 452 67.5
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 2.4e-169 599.4 454 67.2
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.1e-169 599.0 453 67.1
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 4.0e-169 598.6 480 64.2
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.5e-168 596.7 470 64.0
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 8.4e-167 590.9 480 64.0
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 9.3e-166 587.4 474 64.6
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 2.3e-164 582.8 466 65.7
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 8.7e-164 580.9 397 73.6
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 4.2e-158 562.0 404 71.0
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 3.0e-156 555.8 406 69.0
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 5.1e-156 555.1 452 62.2
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 5.6e-155 551.6 428 63.6
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 7.4e-155 551.2 382 72.8
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 9.9e-152 540.8 452 60.4
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 4.9e-151 538.5 449 62.1
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 4.2e-150 535.4 444 60.4
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.2e-138 496.5 349 71.9
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 5.3e-137 491.9 432 58.8
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 6.1e-133 478.4 445 54.6
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 2.3e-132 476.5 445 55.1
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 4.3e-131 472.2 445 53.7
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.7e-130 470.3 445 53.5
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 3.1e-129 466.1 389 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 6.9e-129 464.9 443 52.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.5e-128 463.8 453 56.3
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 3.8e-127 459.1 450 52.9
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 4.2e-126 455.7 278 77.7
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.0e-123 446.8 460 56.7
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.1e-118 431.0 318 69.5
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.2e-116 422.2 444 51.6
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.0e-104 383.6 387 54.3
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 7.2e-102 375.2 252 72.6
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.7e-99 365.5 259 71.0
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 5.7e-91 339.0 290 60.3
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.1e-89 333.2 444 42.8
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.1e-77 293.9 311 53.7
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.1e-76 291.6 188 76.1
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 6.2e-69 265.8 447 39.4
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.1e-61 240.7 158 76.6
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.8e-59 232.6 154 75.3
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.7e-58 231.1 129 81.4
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 3.2e-57 226.9 173 65.3
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.7e-47 194.5 194 52.1
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 1.3e-45 188.3 125 72.0
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.9e-41 174.5 135 67.4
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.6e-40 171.4 121 69.4
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.0e-39 168.7 118 73.7
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 4.9e-34 149.8 94 76.6
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.3e-31 141.7 98 75.5
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.2e-24 118.6 71 76.1
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.8e-20 104.8 99 52.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.9e-18 97.4 81 60.5
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 2.7e-16 90.9 63 71.4
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.1e-14 85.5 60 68.3
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 1.7e-13 81.6 44 81.8
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 7.7e-11 72.8 77 50.6
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.9e-10 70.9 43 76.7
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 3.9e-07 60.5 37 81.1


User provided reference genes

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