Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.5e-206 722.6 370 100.0
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 4.0e-151 538.5 374 75.9
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.6e-150 535.8 374 75.7
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 7.4e-145 517.7 326 83.1
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.2e-134 483.8 376 72.1
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.3e-129 465.7 380 67.9
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.1e-127 457.6 374 67.4
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 5.9e-126 454.9 373 65.1
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 9.4e-124 447.6 376 67.0
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.7e-120 436.8 370 63.5
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.5e-118 428.7 366 66.9
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 2.3e-114 416.4 376 62.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 6.7e-114 414.8 376 62.8
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.3e-109 400.6 398 60.8
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.9e-108 396.7 366 63.9
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.6e-107 393.7 374 59.6
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 8.0e-107 391.3 391 59.8
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 3.5e-102 375.9 375 56.5
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 2.9e-101 372.9 380 58.2
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 2.9e-101 372.9 380 58.2
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 8.5e-101 371.3 411 55.0
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 4.7e-99 365.5 406 54.2
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 8.0e-99 364.8 387 56.3
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.0e-98 364.4 377 57.3
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 8.8e-98 361.3 384 56.0
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.2e-97 360.9 398 53.8
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 2.0e-97 360.1 388 56.2
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 4.4e-97 359.0 385 55.3
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.7e-97 358.6 387 55.3
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.7e-96 357.1 389 55.3
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.8e-96 356.3 381 53.5
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 3.7e-96 355.9 377 55.7
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 4.9e-96 355.5 375 54.1
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 4.9e-96 355.5 409 52.6
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.1e-95 354.4 361 58.2
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.4e-95 354.0 408 52.5
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.4e-95 353.2 386 56.5
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.9e-94 348.6 259 68.0
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 8.6e-93 344.7 377 53.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 3.3e-92 342.8 386 52.8
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.6e-91 340.5 377 53.3
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 2.1e-91 340.1 389 54.2
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 2.1e-91 340.1 377 54.6
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.8e-90 337.0 381 50.9
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 4.0e-90 335.9 381 53.5
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 3.4e-89 332.8 396 51.0
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 2.9e-88 329.7 410 49.8
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 5.4e-87 325.5 415 47.7
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 2.7e-86 323.2 379 52.2
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.3e-85 320.9 377 54.9
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 2.9e-85 319.7 385 53.5
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 2.9e-85 319.7 386 51.8
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.6e-85 318.2 414 46.6
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.3e-84 316.2 379 52.2
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 5.6e-84 315.5 379 51.7
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 5.6e-84 315.5 377 51.5
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 9.5e-84 314.7 385 53.5
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.2e-83 314.3 407 50.6
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 6.2e-83 312.0 375 50.1
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 6.2e-83 312.0 429 47.8
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.4e-82 310.8 393 51.4
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 8.9e-82 308.1 408 49.3
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 1.5e-81 307.4 376 53.2
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.5e-81 307.4 391 48.1
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 9.8e-81 304.7 374 50.5
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 9.8e-81 304.7 378 50.3
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.2e-80 303.5 403 47.9
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 1.9e-79 300.4 377 48.5
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 7.0e-79 298.5 379 48.3
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.2e-78 297.7 402 46.3
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 7.8e-78 295.0 367 52.3
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 6.6e-77 292.0 379 50.1
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.6e-77 291.6 404 47.3
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 3.3e-76 289.7 330 53.3
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.3e-76 289.3 395 48.4
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 5.6e-76 288.9 396 48.2
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 7.3e-76 288.5 375 49.3
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 9.5e-76 288.1 375 49.1
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 2.1e-75 287.0 424 44.8
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.6e-75 286.2 371 48.5
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.7e-75 285.8 414 44.2
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 1.4e-74 284.3 376 48.1
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 2.6e-73 280.0 314 52.9
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.3e-72 277.7 394 46.7
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 5.4e-71 272.3 378 46.8
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.6e-70 270.8 318 51.9
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 3.5e-70 269.6 376 48.9
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 6.0e-70 268.9 269 57.6
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.3e-69 267.7 366 48.4
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.7e-69 267.3 404 45.5
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.1e-69 265.8 381 46.7
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 9.2e-63 245.0 404 41.8
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 6.0e-62 242.3 389 44.5
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.7e-61 240.7 320 48.4
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 3.9e-61 239.6 405 41.5
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 6.6e-61 238.8 405 40.5
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.1e-60 238.0 413 40.0
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 2.1e-59 233.8 406 40.6
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 3.6e-59 233.0 252 57.1
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 6.2e-59 232.3 404 40.3
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 4.0e-58 229.6 384 40.9
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.6e-57 226.9 382 42.1
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.1e-55 221.5 406 41.1
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.1e-55 221.5 406 41.1
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.2e-55 219.9 404 41.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 4.2e-55 219.5 408 38.0
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.2e-54 218.0 406 40.6
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 2.3e-53 213.8 403 39.7
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.9e-52 210.7 402 39.1
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 3.6e-51 206.5 286 45.8
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 8.1e-51 205.3 416 39.2
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.5e-49 201.1 417 38.8
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 1.5e-49 201.1 417 38.4
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 3.0e-45 186.8 415 38.1
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 8.7e-45 185.3 248 42.7
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 1.5e-44 184.5 258 44.6
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.5e-44 183.7 414 37.4
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 2.5e-44 183.7 414 37.9
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 3.1e-42 176.8 257 43.2
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.0e-41 174.1 259 43.2
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.4e-41 173.3 199 51.3
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.5e-41 172.9 329 40.4
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 4.5e-41 172.9 252 45.6
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 3.2e-39 166.8 231 52.4
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.6e-38 164.5 246 40.2
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 2.7e-38 163.7 255 42.4
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 3.5e-38 163.3 249 41.0
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 7.9e-38 162.2 249 43.4
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.3e-37 161.4 213 44.6
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 2.3e-37 160.6 195 48.7
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 3.0e-37 160.2 403 34.2
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 8.7e-37 158.7 497 31.0
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 3.3e-36 156.8 203 50.7
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 4.3e-36 156.4 376 32.4
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.6e-35 154.5 418 32.8
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.1e-35 154.1 255 41.2
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.8e-35 153.7 289 40.8
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 6.2e-35 152.5 257 40.5
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 4.0e-34 149.8 250 39.2
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.5e-33 147.9 249 41.8
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.0e-33 147.5 255 40.8
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 3.4e-33 146.7 257 38.9
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.0e-32 145.2 208 42.8
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.3e-32 144.8 393 32.3
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.9e-31 141.0 222 37.8
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 5.5e-31 139.4 221 39.8
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.7e-30 137.1 257 37.4
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 4.6e-30 136.3 188 44.1
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.0e-30 136.0 232 36.2
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.0e-29 135.2 413 32.4
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 3.0e-29 133.7 213 40.4
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 6.7e-29 132.5 254 37.8
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 8.7e-29 132.1 251 37.5
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.5e-28 131.3 122 60.7
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.5e-28 131.3 353 32.9
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 4.3e-28 129.8 235 38.3
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.1e-27 127.5 261 35.2
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.4e-25 120.2 141 53.9
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.3e-24 118.2 154 53.2
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 4.2e-23 113.2 103 51.5
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.5e-22 110.2 217 40.6
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.4e-18 98.2 173 36.4
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.4e-18 98.2 173 36.4
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 7.7e-17 92.4 47 85.1
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.0e-16 89.7 268 28.4
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.9e-14 82.4 115 39.1
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.0e-13 82.0 362 25.1
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 1.8e-13 81.3 116 45.7
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 8.2e-11 72.4 179 34.1
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 2.0e-09 67.8 51 58.8
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 4.5e-09 66.6 133 41.4


User provided reference genes

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