Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 1.5e-101 372.9 194 100.0
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 3.0e-57 225.7 196 64.8
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 5.2e-57 224.9 206 61.2
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 6.8e-57 224.6 197 63.5
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 8.8e-57 224.2 196 64.8
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.6e-56 222.6 197 62.9
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 9.8e-56 220.7 194 61.3
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 2.2e-55 219.5 196 64.8
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 3.7e-55 218.8 224 57.6
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 6.3e-55 218.0 196 62.2
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 1.4e-54 216.9 192 62.5
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.4e-54 216.9 196 61.7
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 1.8e-54 216.5 195 63.1
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 1.8e-54 216.5 197 61.4
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 5.4e-54 214.9 192 59.9
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 5.4e-54 214.9 204 58.8
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 7.0e-54 214.5 195 62.6
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 1.2e-53 213.8 194 60.8
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.2e-53 213.8 197 59.4
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 1.6e-53 213.4 192 60.9
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.6e-53 213.4 197 58.9
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 1.6e-53 213.4 192 59.4
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 2.0e-53 213.0 195 60.5
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 2.0e-53 213.0 192 59.9
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 2.0e-53 213.0 204 58.3
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 3.5e-53 212.2 195 62.1
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 3.5e-53 212.2 196 59.2
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 4.5e-53 211.8 197 60.4
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 5.9e-53 211.5 195 61.0
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 7.7e-53 211.1 195 61.0
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 7.7e-53 211.1 197 58.9
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 1.0e-52 210.7 192 61.5
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 1.3e-52 210.3 197 58.9
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 1.3e-52 210.3 194 60.8
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 1.3e-52 210.3 196 61.2
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 1.7e-52 209.9 197 56.3
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 1.7e-52 209.9 201 57.7
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 2.3e-52 209.5 195 61.0
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 2.3e-52 209.5 197 60.9
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 2.9e-52 209.1 197 59.4
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 3.8e-52 208.8 197 59.4
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 3.8e-52 208.8 195 58.5
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 3.8e-52 208.8 195 58.5
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 5.0e-52 208.4 194 59.8
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 6.6e-52 208.0 197 59.4
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 1.1e-51 207.2 199 56.8
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.1e-51 207.2 192 58.9
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.9e-51 206.5 192 59.9
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 2.5e-51 206.1 196 59.2
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 5.6e-51 204.9 235 51.5
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 9.5e-51 204.1 192 57.8
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 9.5e-51 204.1 211 56.4
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 9.5e-51 204.1 201 54.7
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 2.1e-50 203.0 195 58.5
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 4.7e-50 201.8 197 57.9
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 4.7e-50 201.8 176 64.2
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 6.1e-50 201.4 201 55.7
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 6.1e-50 201.4 201 55.7
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 8.0e-50 201.1 199 57.8
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 8.0e-50 201.1 202 56.4
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 8.0e-50 201.1 195 57.9
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 1.0e-49 200.7 206 53.9
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.8e-49 199.9 197 56.9
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 1.8e-49 199.9 206 55.8
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 4.0e-49 198.7 194 56.2
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 5.2e-49 198.4 224 52.7
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 5.2e-49 198.4 197 56.3
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.8e-49 198.0 197 56.3
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 6.8e-49 198.0 197 56.3
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 8.9e-49 197.6 197 56.3
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 8.9e-49 197.6 206 53.9
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 1.5e-48 196.8 206 53.9
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 2.6e-48 196.1 192 58.3
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.6e-48 196.1 194 55.7
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.6e-48 196.1 194 55.7
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 3.4e-48 195.7 192 55.7
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 3.4e-48 195.7 196 58.7
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 7.5e-48 194.5 206 53.9
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 9.8e-48 194.1 197 56.9
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 2.9e-47 192.6 192 55.7
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 3.7e-47 192.2 206 53.4
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 3.7e-47 192.2 206 53.4
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.1e-46 190.7 192 54.7
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 1.4e-46 190.3 176 59.1
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 1.4e-46 190.3 202 51.5
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 2.4e-46 189.5 176 58.5
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 5.4e-46 188.3 201 54.2
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 9.2e-46 187.6 206 51.5
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 1.6e-45 186.8 196 52.0
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 2.0e-45 186.4 192 55.7
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 4.6e-45 185.3 193 55.4
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 4.6e-45 185.3 199 54.3
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 7.8e-45 184.5 199 53.3
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.3e-44 183.7 203 54.7
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 1.3e-44 183.7 204 52.0
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.3e-44 183.0 196 52.6
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 3.9e-44 182.2 236 47.9
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 5.0e-44 181.8 207 53.1
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 1.9e-43 179.9 176 58.0
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 3.3e-43 179.1 202 50.0
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 7.3e-43 177.9 193 51.8
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 1.2e-42 177.2 206 51.9
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 2.1e-42 176.4 193 52.8
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 3.6e-42 175.6 176 57.4
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 4.7e-42 175.3 193 49.7
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 8.0e-42 174.5 193 50.3
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 8.0e-42 174.5 193 50.3
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 1.0e-41 174.1 193 50.3
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 1.8e-41 173.3 193 49.7
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 1.8e-41 173.3 193 49.7
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 1.8e-41 173.3 193 49.7
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 2.3e-41 172.9 193 49.7
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 2.3e-41 172.9 193 50.3
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 2.3e-41 172.9 193 49.7
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 2.3e-41 172.9 193 49.7
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 2.3e-41 172.9 193 49.7
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 3.1e-41 172.6 193 49.7
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 3.1e-41 172.6 193 49.7
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 3.1e-41 172.6 193 49.7
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 4.0e-41 172.2 193 49.7
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 4.0e-41 172.2 200 49.0
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 8.9e-41 171.0 193 49.2
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 8.9e-41 171.0 193 49.2
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 1.5e-40 170.2 195 50.3
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 3.4e-40 169.1 193 49.2
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 7.5e-40 167.9 193 49.2
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 2.2e-39 166.4 164 56.1
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 2.9e-39 166.0 192 51.0
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 8.3e-39 164.5 181 50.8
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 1.1e-38 164.1 179 56.4
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 2.4e-38 162.9 192 50.0
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 3.2e-38 162.5 208 49.5
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 4.1e-38 162.2 202 44.6
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 5.4e-38 161.8 212 45.3
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 9.2e-38 161.0 208 48.1
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 1.2e-37 160.6 200 49.0
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 1.3e-36 157.1 199 48.2
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.7e-36 156.8 200 48.0
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.3e-36 156.4 183 50.8
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 5.0e-36 155.2 217 47.0
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 9.5e-35 151.0 304 37.2
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 2.8e-34 149.4 190 46.3
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 6.2e-34 148.3 129 66.7
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 3.1e-33 146.0 284 37.3
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 3.2e-30 136.0 94 76.6
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 4.6e-29 132.1 160 47.5
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 4.6e-29 132.1 181 45.9
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 8.6e-28 127.9 166 47.0
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 6.2e-26 121.7 167 47.3
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 1.1e-25 120.9 231 39.4
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.4e-25 120.6 242 36.8
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 6.4e-23 111.7 142 43.7
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 6.4e-23 111.7 117 51.3
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 8.4e-23 111.3 95 61.1
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.4e-22 110.5 191 35.6
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 5.4e-22 108.6 188 35.6
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 5.4e-22 108.6 191 35.1
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 1.1e-19 100.9 174 36.8
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 5.2e-17 92.0 184 32.6
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 2.6e-16 89.7 127 40.2
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 5.8e-16 88.6 286 26.9
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 1.1e-14 84.3 177 30.5
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.4e-14 83.2 73 67.1
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 3.2e-14 82.8 51 82.4
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 2.1e-13 80.1 174 28.7
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 3.5e-13 79.3 54 74.1
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 1.1e-11 74.3 191 31.9
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 9.6e-11 71.2 67 55.2
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 8.1e-10 68.2 67 53.7
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 4.5e-08 62.4 38 76.3
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 4.9e-07 58.9 68 50.0


User provided reference genes

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