Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 1.2e-166 589.7 301 100.0
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 7.9e-121 437.6 301 77.7
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 3.4e-100 369.0 286 67.8
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 5.5e-98 361.7 283 66.1
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 4.4e-95 352.1 267 66.7
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 1.4e-88 330.5 286 60.1
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 1.4e-88 330.5 295 61.4
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 8.2e-86 321.2 297 60.6
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 2.9e-83 312.8 302 59.9
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 2.7e-81 306.2 282 58.9
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 8.0e-81 304.7 286 59.4
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 9.8e-79 297.7 260 60.8
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 1.3e-78 297.4 307 53.7
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 2.8e-78 296.2 300 56.7
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 3.1e-77 292.7 287 56.4
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 7.0e-77 291.6 286 57.3
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 9.1e-77 291.2 305 54.1
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 2.7e-76 289.7 293 57.7
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 7.7e-76 288.1 289 55.0
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.7e-76 288.1 289 55.0
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.7e-75 287.0 260 58.5
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 1.7e-75 287.0 282 57.4
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 2.3e-75 286.6 275 56.4
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 1.9e-74 283.5 278 55.4
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 1.9e-74 283.5 290 56.6
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 5.5e-74 282.0 287 54.0
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 1.2e-73 280.8 285 57.9
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 3.6e-73 279.3 288 56.6
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 4.7e-73 278.9 293 51.2
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 6.1e-73 278.5 301 55.5
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 6.8e-72 275.0 266 54.1
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 8.9e-72 274.6 293 54.9
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 1.2e-71 274.2 284 51.4
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 2.0e-71 273.5 293 54.3
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 2.0e-71 273.5 266 57.1
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 2.6e-71 273.1 297 53.2
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 9.8e-71 271.2 283 53.4
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 9.8e-71 271.2 299 53.8
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 2.2e-70 270.0 305 53.8
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 8.3e-70 268.1 289 52.6
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 8.3e-70 268.1 280 51.4
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 9.2e-69 264.6 286 51.0
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 9.2e-69 264.6 263 54.8
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 3.5e-68 262.7 293 51.9
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 5.9e-68 261.9 285 51.9
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 1.7e-67 260.4 293 51.9
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 3.8e-67 259.2 282 50.0
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 1.5e-66 257.3 282 53.2
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 1.5e-66 257.3 267 51.7
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 3.3e-66 256.1 293 51.5
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 1.0e-64 251.1 267 52.4
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 1.4e-64 250.8 263 53.2
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 2.0e-63 246.9 277 48.7
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 4.4e-63 245.7 295 48.5
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 4.4e-63 245.7 331 47.1
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 5.8e-63 245.4 295 48.5
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 5.8e-63 245.4 274 50.7
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 4.9e-62 242.3 305 48.2
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 1.1e-61 241.1 279 47.7
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 1.4e-61 240.7 284 48.9
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 7.0e-61 238.4 298 48.7
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 2.3e-59 233.4 281 49.1
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 8.6e-59 231.5 269 50.9
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 1.1e-58 231.1 288 47.9
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 1.1e-58 231.1 277 49.1
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 1.1e-58 231.1 280 50.0
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 2.1e-57 226.9 259 50.2
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 3.6e-57 226.1 309 44.0
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.8e-56 223.8 296 45.3
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 2.3e-56 223.4 285 48.8
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 2.6e-55 219.9 289 46.7
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 7.5e-55 218.4 284 45.8
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 9.8e-55 218.0 261 50.2
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 1.3e-54 217.6 254 51.2
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 4.9e-54 215.7 264 48.9
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 1.9e-53 213.8 277 46.9
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 2.4e-53 213.4 205 55.1
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 3.2e-53 213.0 290 45.9
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 3.2e-53 213.0 290 45.9
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 3.2e-53 213.0 290 44.1
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 5.4e-53 212.2 278 45.3
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 9.2e-53 211.5 252 50.0
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 1.6e-52 210.7 303 44.6
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 2.7e-52 209.9 301 42.9
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 2.7e-52 209.9 224 50.4
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 2.3e-51 206.8 294 44.2
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 1.1e-50 204.5 266 45.9
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 1.5e-50 204.1 279 43.7
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.5e-50 204.1 249 46.6
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 8.9e-48 194.9 260 47.3
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 2.0e-47 193.7 294 43.9
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 1.3e-46 191.0 260 47.7
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 4.9e-46 189.1 279 42.3
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 1.1e-45 188.0 252 45.2
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 1.4e-45 187.6 243 45.7
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.1e-45 185.3 164 56.1
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 1.7e-43 180.6 286 43.4
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 2.1e-41 173.7 209 48.3
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 3.6e-41 172.9 284 41.5
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 4.7e-41 172.6 284 41.2
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 2.4e-40 170.2 303 35.6
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 3.1e-40 169.9 280 40.0
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 2.2e-38 163.7 305 36.1
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 5.1e-27 125.9 112 65.2
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 2.5e-26 123.6 135 50.4
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 2.4e-24 117.1 141 46.8
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 1.4e-16 91.3 89 59.6
SEGI_04113 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 2.6e-15 87.0 384 25.0
SEGI_08002 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 2.6e-15 87.0 384 25.0
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 3.4e-15 86.7 423 24.1
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 2.9e-14 83.6 90 48.9
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 1.3e-09 68.2 109 36.7
FvH4_5g06191 Fragaria vesca HOM05D001393 ORTHO05D007477 3.4e-07 60.1 66 47.0


User provided reference genes

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