Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 1.9e-64 249.6 190 100.0
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 2.9e-36 156.0 82 92.7
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 5.5e-35 151.8 82 87.8
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 7.1e-35 151.4 82 86.6
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 1.2e-34 150.6 79 88.6
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 1.0e-33 147.5 80 86.2
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.0e-33 147.5 80 82.5
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 2.3e-33 146.4 80 87.5
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 2.3e-33 146.4 80 87.5
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 3.9e-33 145.6 82 86.6
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 5.1e-33 145.2 80 81.2
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 6.7e-33 144.8 78 84.6
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 8.7e-33 144.4 82 82.9
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 8.7e-33 144.4 82 82.9
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 8.7e-33 144.4 80 80.0
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 8.7e-33 144.4 80 85.0
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 1.1e-32 144.1 190 59.5
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.1e-32 144.1 78 84.6
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.5e-32 143.7 82 81.7
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 1.9e-32 143.3 78 83.3
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 2.5e-32 142.9 82 81.7
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 3.3e-32 142.5 78 83.3
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 3.3e-32 142.5 78 84.6
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 3.3e-32 142.5 80 80.0
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 5.7e-32 141.7 79 82.3
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 7.4e-32 141.4 81 80.2
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 7.4e-32 141.4 81 80.2
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 9.6e-32 141.0 78 80.8
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 9.6e-32 141.0 80 82.5
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 9.6e-32 141.0 80 82.5
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 9.6e-32 141.0 81 81.5
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 2.1e-31 139.8 78 82.1
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 2.8e-31 139.4 81 82.7
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.8e-31 139.4 78 79.5
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 3.7e-31 139.0 79 82.3
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 6.3e-31 138.3 78 84.6
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 1.1e-30 137.5 77 80.5
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 1.1e-30 137.5 77 80.5
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 1.4e-30 137.1 80 78.8
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 3.1e-30 136.0 80 76.2
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 4.1e-30 135.6 81 77.8
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 4.1e-30 135.6 78 79.5
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 5.3e-30 135.2 82 82.9
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.3e-30 135.2 77 79.2
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.3e-30 135.2 77 79.2
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 5.3e-30 135.2 78 76.9
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 6.9e-30 134.8 78 74.4
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 2.0e-29 133.3 79 75.9
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 4.5e-29 132.1 80 77.5
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 4.5e-29 132.1 80 77.5
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 5.9e-29 131.7 80 77.5
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 5.9e-29 131.7 80 76.2
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 5.9e-29 131.7 80 76.2
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 5.9e-29 131.7 82 75.6
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 7.6e-29 131.3 81 76.5
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 1.0e-28 131.0 81 76.5
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 1.7e-28 130.2 76 82.9
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 2.2e-28 129.8 78 75.6
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 2.2e-28 129.8 80 75.0
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 2.9e-28 129.4 79 75.9
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 2.9e-28 129.4 79 72.2
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.9e-28 129.4 77 77.9
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 3.8e-28 129.0 78 76.9
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 5.0e-28 128.6 78 76.9
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 5.0e-28 128.6 78 76.9
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 5.0e-28 128.6 79 74.7
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 6.5e-28 128.3 78 76.9
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 6.5e-28 128.3 79 77.2
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 8.4e-28 127.9 73 80.8
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.1e-27 127.5 81 71.6
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 1.4e-27 127.1 80 73.8
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.4e-27 127.1 77 76.6
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 1.9e-27 126.7 80 75.0
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 2.5e-27 126.3 79 74.7
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 2.5e-27 126.3 80 73.8
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 3.2e-27 125.9 79 70.9
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 3.2e-27 125.9 79 70.9
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 5.5e-27 125.2 77 71.4
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 5.5e-27 125.2 80 72.5
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 5.5e-27 125.2 80 72.5
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 7.2e-27 124.8 82 68.3
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 7.2e-27 124.8 82 78.0
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 7.2e-27 124.8 78 73.1
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 9.3e-27 124.4 79 69.6
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 1.2e-26 124.0 82 78.0
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 2.1e-26 123.2 80 75.0
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 2.1e-26 123.2 75 77.3
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 3.5e-26 122.5 81 69.1
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 3.5e-26 122.5 82 69.5
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 4.6e-26 122.1 79 69.6
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 7.9e-26 121.3 79 70.9
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 1.8e-25 120.2 83 74.7
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 3.0e-25 119.4 82 74.4
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 3.9e-25 119.0 82 74.4
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 5.1e-25 118.6 82 67.1
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 8.7e-25 117.9 82 73.2
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.1e-24 117.5 78 67.9
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.5e-24 117.1 70 75.7
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.5e-24 116.3 71 74.6
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 3.3e-24 115.9 78 65.4
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 4.3e-24 115.5 82 70.7
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 5.7e-24 115.2 83 71.1
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 5.7e-24 115.2 83 68.7
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 5.7e-24 115.2 68 76.5
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 5.7e-24 115.2 68 76.5
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 5.7e-24 115.2 83 72.3
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 7.4e-24 114.8 82 63.4
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 7.4e-24 114.8 82 70.7
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 7.4e-24 114.8 82 70.7
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 7.4e-24 114.8 82 64.6
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 9.7e-24 114.4 80 68.8
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.3e-23 114.0 82 62.2
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.3e-23 114.0 83 68.7
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 1.6e-23 113.6 82 65.9
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 2.2e-23 113.2 82 67.1
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 2.2e-23 113.2 76 69.7
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 2.2e-23 113.2 82 63.4
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 3.7e-23 112.5 81 72.8
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 4.8e-23 112.1 83 68.7
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 6.3e-23 111.7 81 66.7
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 1.1e-22 110.9 81 66.7
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 4.1e-22 109.0 78 60.3
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 4.1e-22 109.0 81 61.7
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 5.3e-22 108.6 81 65.4
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.2e-21 107.5 81 64.2
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 2.6e-21 106.3 78 64.1
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 3.4e-21 105.9 83 66.3
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 1.3e-20 104.0 82 59.8
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 2.9e-20 102.8 62 74.2
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 3.6e-18 95.9 73 61.6
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 3.6e-18 95.9 77 58.4
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 6.1e-18 95.1 63 68.3
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 6.1e-18 95.1 74 64.9
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 6.1e-18 95.1 74 64.9
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.4e-17 94.0 62 72.6
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 3.0e-17 92.8 80 57.5
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 1.5e-16 90.5 78 51.3
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 2.5e-16 89.7 73 58.9
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 4.3e-16 89.0 62 67.7
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.2e-15 86.7 78 53.8
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 6.3e-15 85.1 78 55.1
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 6.3e-15 85.1 78 55.1
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 2.7e-10 69.7 79 50.6
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 3.6e-10 69.3 44 65.9
CDE12G0350 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.3e-07 60.8 35 77.1
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 2.2e-07 60.1 75 45.3
Actinidia19406 Actinidia chinensis HOM05D005289 ORTHO05D006346 1.8e-06 57.0 34 79.4


User provided reference genes

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