Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 2.5e-177 625.9 411 100.0
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 2.1e-171 606.3 409 96.3
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 7.3e-161 571.2 412 88.1
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 5.8e-158 561.6 409 90.0
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 7.6e-158 561.2 406 90.9
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 8.4e-157 557.8 412 91.3
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 2.1e-155 553.1 404 77.2
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 3.9e-154 548.9 414 89.6
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 6.6e-154 548.1 406 86.5
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 7.3e-153 544.7 408 87.0
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 9.6e-153 544.3 402 82.1
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.3e-152 543.9 411 86.6
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.3e-152 543.9 411 86.6
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 1.6e-152 543.5 404 88.9
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.1e-152 543.1 408 88.2
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 3.6e-152 542.3 399 89.7
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 3.6e-152 542.3 399 88.7
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 4.8e-152 542.0 406 87.4
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 8.1e-152 541.2 399 85.2
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.4e-151 540.4 401 87.5
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 2.4e-151 539.7 405 86.7
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 4.0e-151 538.9 396 88.1
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 9.0e-151 537.7 408 87.7
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 1.2e-150 537.3 409 86.3
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 1.2e-150 537.3 405 81.5
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 2.0e-150 536.6 404 77.0
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 4.4e-150 535.4 419 71.4
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 4.4e-150 535.4 413 80.9
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 4.4e-150 535.4 413 80.9
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 7.6e-150 534.6 409 77.3
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 9.9e-150 534.3 411 86.6
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.3e-149 533.9 408 87.5
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.3e-149 533.9 409 86.3
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 1.3e-149 533.9 409 87.5
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.7e-149 533.5 408 87.5
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 1.7e-149 533.5 412 80.8
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 2.9e-149 532.7 408 85.3
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 2.9e-149 532.7 409 87.5
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 3.8e-149 532.3 408 87.3
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 6.4e-149 531.6 406 85.7
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 8.4e-149 531.2 408 87.0
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.4e-148 529.6 405 86.7
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 3.2e-148 529.3 408 85.5
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 1.2e-147 527.3 411 84.9
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 1.6e-147 526.9 408 86.3
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 2.7e-147 526.2 411 84.7
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 3.5e-147 525.8 406 86.7
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 6.0e-147 525.0 398 86.7
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 7.8e-147 524.6 408 78.4
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 1.0e-146 524.2 408 84.8
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.3e-146 523.9 411 84.7
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 2.3e-146 523.1 410 82.0
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 3.9e-146 522.3 409 80.4
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 5.1e-146 521.9 404 84.2
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 5.1e-146 521.9 403 83.9
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.6e-144 516.9 413 75.3
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.6e-144 516.9 402 84.3
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.2e-142 510.8 428 70.8
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.2e-142 510.8 428 70.8
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 1.3e-141 507.3 403 77.4
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.2e-141 506.5 408 71.1
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 4.9e-141 505.4 406 83.7
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 4.2e-140 502.3 408 84.6
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 4.6e-139 498.8 408 73.5
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 7.9e-139 498.0 406 73.2
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 1.3e-138 497.3 426 78.6
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 3.0e-138 496.1 392 84.9
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 6.7e-138 495.0 398 74.4
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 1.1e-137 494.2 527 67.4
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 1.5e-137 493.8 399 73.4
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 6.2e-136 488.4 409 72.9
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 6.2e-136 488.4 401 72.1
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 8.1e-136 488.0 521 65.5
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.4e-135 487.3 403 75.7
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 5.3e-135 485.3 409 72.9
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 2.0e-134 483.4 400 73.2
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.0e-134 483.4 412 72.1
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 4.5e-134 482.3 412 71.8
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 2.2e-133 479.9 396 68.4
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.2e-133 479.9 409 67.7
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 1.0e-130 471.1 407 76.4
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 1.0e-130 471.1 397 77.3
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 3.9e-130 469.2 399 81.7
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 5.1e-130 468.8 390 80.3
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 6.7e-130 468.4 394 77.4
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 6.7e-130 468.4 404 75.7
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 6.7e-130 468.4 404 75.7
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 6.7e-130 468.4 404 75.7
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 6.7e-130 468.4 390 78.2
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 8.7e-130 468.0 394 77.2
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 4.8e-128 462.2 436 67.7
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 1.1e-127 461.1 391 77.0
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 1.4e-127 460.7 404 75.0
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 1.4e-127 460.7 404 75.0
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 1.4e-127 460.7 394 76.9
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 5.3e-127 458.8 398 78.9
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 1.2e-126 457.6 410 78.0
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 1.2e-126 457.6 409 77.3
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.5e-126 457.2 388 78.4
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.0e-126 456.8 410 77.8
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 3.4e-126 456.1 363 83.7
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 7.6e-126 454.9 399 70.4
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.0e-125 454.5 410 77.1
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 3.9e-122 442.6 410 66.1
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 3.9e-122 442.6 408 68.6
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 2.2e-117 426.8 426 62.4
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 5.5e-116 422.2 389 74.0
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 2.1e-115 420.2 396 69.2
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-112 410.6 408 55.9
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 2.9e-109 399.8 411 59.1
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 5.0e-109 399.1 403 59.3
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 5.0e-109 399.1 403 59.3
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 5.0e-109 399.1 391 68.8
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 6.5e-109 398.7 410 57.6
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 2.7e-107 393.3 391 67.5
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 4.7e-107 392.5 417 54.0
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 6.1e-107 392.1 426 59.2
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 1.8e-106 390.6 399 58.4
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 2.0e-105 387.1 424 55.9
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 1.7e-104 384.0 391 73.9
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 8.2e-104 381.7 383 60.1
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.4e-103 380.9 403 57.3
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 1.2e-102 377.9 395 56.5
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 1.5e-102 377.5 450 48.4
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 2.9e-101 373.2 433 53.8
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 4.7e-99 365.9 409 54.3
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 8.2e-96 355.1 407 62.7
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 2.0e-94 350.5 413 51.8
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 5.7e-89 332.4 260 80.4
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 9.1e-87 325.1 418 49.0
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.9e-85 320.1 366 56.6
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 2.9e-85 320.1 335 61.2
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 8.8e-82 308.5 386 47.7
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 4.5e-78 296.2 387 45.0
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 6.1e-75 285.8 293 80.2
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.4e-74 284.6 420 47.4
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 2.2e-72 277.3 252 66.7
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 1.7e-69 267.7 198 65.7
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 5.8e-65 252.7 398 42.2
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 1.4e-63 248.1 261 57.5
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 2.0e-62 244.2 261 57.1
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 3.0e-61 240.4 193 63.2
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 5.6e-60 236.1 396 46.5
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.8e-51 207.2 120 83.3
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.8e-50 204.5 99 96.0
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.2e-47 193.7 97 90.7
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 4.6e-46 189.9 299 39.1
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 6.0e-46 189.5 89 97.8
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 1.3e-45 188.3 299 39.5
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 1.6e-43 181.4 88 92.0
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 4.6e-38 163.3 385 37.7
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.4e-34 151.8 150 54.0
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-32 144.4 100 66.0
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 2.2e-32 144.4 95 71.6
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 6.4e-32 142.9 183 47.0
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 5.4e-31 139.8 95 70.5
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 3.6e-27 127.1 81 74.1
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.2e-25 122.1 299 37.5
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 3.4e-25 120.6 58 91.4
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 5.8e-25 119.8 80 71.2
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 1.1e-23 115.5 90 60.0
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 2.1e-22 111.3 73 71.2
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.5e-20 104.4 50 84.0
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 2.4e-18 97.8 63 71.4
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 4.0e-18 97.1 79 54.4
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 2.6e-17 94.4 44 95.5
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 4.5e-17 93.6 120 64.2
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.7e-16 91.7 43 95.3
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 4.9e-16 90.1 45 86.7
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.2e-15 87.4 45 86.7
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.2e-15 87.4 43 88.4
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 1.3e-13 82.0 40 92.5
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 1.3e-13 82.0 40 92.5
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 2.3e-13 81.3 164 32.9
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.1e-12 79.0 45 80.0
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 7.4e-12 76.3 38 86.8
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.8e-11 74.3 60 68.3
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 5.3e-10 70.1 47 59.6
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 1.5e-09 68.6 40 75.0
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 2.1e-06 58.2 26 92.3
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 4.6e-06 57.0 72 38.9


User provided reference genes

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