Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42835 Davidia involucrata HOM05D004690 ORTHO05D005527 1.7e-144 516.2 285 100.0
Dinv43264 Davidia involucrata HOM05D004690 ORTHO05D005527 1.7e-144 516.2 285 100.0
CSS0047585 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 1.1e-98 364.0 291 71.5
Hma1.2p1_0028F.1_g017650 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 4.0e-98 362.1 287 71.1
CSS0044573 Camellia sinensis var. sinensis HOM05D004690 ORTHO05D005527 3.4e-97 359.0 291 71.5
Nn2g12436 Nelumbo nucifera HOM05D004690 ORTHO05D005527 5.4e-95 351.7 287 70.4
GSVIVG01023642001 Vitis vinifera HOM05D004690 ORTHO05D005527 1.4e-90 337.0 290 67.9
TAR383G0346 Trochodendron aralioides HOM05D004690 ORTHO05D005527 5.8e-89 331.6 290 68.3
CiPaw.16G107700 Carya illinoinensis HOM05D004690 ORTHO05D005527 1.7e-88 330.1 286 72.0
CiPaw.15G165900 Carya illinoinensis HOM05D004690 ORTHO05D005527 7.1e-87 324.7 261 72.4
Ciclev10009165m.g Citrus clementina HOM05D004690 ORTHO05D005527 7.1e-87 324.7 286 67.8
Cfa020803 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.7e-85 320.1 286 68.5
Thecc.09G151500 Theobroma cacao HOM05D004690 ORTHO05D005527 2.3e-85 319.7 286 66.1
Cpa.g.sc46.177 Carica papaya HOM05D004690 ORTHO05D005527 5.1e-85 318.5 289 68.5
Hma1.2p1_0222F.1_g093770 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 1.1e-84 317.4 304 63.2
Manes.14G143400 Manihot esculenta HOM05D004690 ORTHO05D005527 7.3e-84 314.7 289 66.4
MSTRG.10705 Avicennia marina HOM05D004690 ORTHO05D005527 3.1e-82 309.3 287 64.8
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 3.1e-82 309.3 287 63.8
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 3.1e-82 309.3 287 63.8
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 6.8e-82 308.1 287 63.4
Eucgr.C02505 Eucalyptus grandis HOM05D004690 ORTHO05D005527 8.9e-82 307.8 304 64.1
Prupe.7G265300 Prunus persica HOM05D004690 ORTHO05D005527 4.4e-81 305.4 292 61.3
Potri.018G104000 Populus trichocarpa HOM05D004690 ORTHO05D005527 9.9e-81 304.3 264 66.7
arahy.Tifrunner.gnm1.ann1.RJ6BPE Arachis hypogaea HOM05D004690 ORTHO05D005527 1.7e-80 303.5 285 66.0
Migut.K00308 Erythranthe guttata HOM05D004690 ORTHO05D005527 2.2e-80 303.1 288 64.9
TWI63G1092 Tripterygium wilfordii HOM05D004690 ORTHO05D005527 2.2e-80 303.1 274 65.7
arahy.Tifrunner.gnm1.ann1.VFXC0H Arachis hypogaea HOM05D004690 ORTHO05D005527 3.8e-80 302.4 285 65.6
COL.COLO4_23958 Corchorus olitorius HOM05D004690 ORTHO05D005527 6.4e-80 301.6 291 62.2
CsaV3_2G007620 Cucumis sativus L. HOM05D004690 ORTHO05D005527 1.4e-79 300.4 264 65.9
MD02G1005700 Malus domestica HOM05D004690 ORTHO05D005527 4.2e-79 298.9 295 61.4
PGR102G1430 Punica granatum HOM05D004690 ORTHO05D005527 4.2e-79 298.9 289 65.7
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 9.2e-79 297.7 265 63.8
Phvul.003G154700 Phaseolus vulgaris HOM05D004690 ORTHO05D005527 2.7e-78 296.2 284 61.6
PGSC0003DMG400011147 Solanum tuberosum HOM05D004690 ORTHO05D005527 4.6e-78 295.4 288 62.5
RcHm_v2.0_Chr2g0085411 Rosa chinensis HOM05D004690 ORTHO05D005527 1.3e-77 293.9 292 59.6
Solyc07g005830.3 Solanum lycopersicum HOM05D004690 ORTHO05D005527 1.3e-77 293.9 288 62.2
Sopen07g001930 Solanum pennellii HOM05D004690 ORTHO05D005527 1.3e-77 293.9 288 62.2
Sed0017216 Sechium edule HOM05D004690 ORTHO05D005527 5.1e-77 292.0 308 58.4
FvH4_1g00690 Fragaria vesca HOM05D004690 ORTHO05D005527 6.6e-77 291.6 285 59.3
Atru.chr7.16 Acer truncatum HOM05D004690 ORTHO05D005527 1.5e-76 290.4 227 73.6
unitig_899.g15465 Utricularia gibba HOM05D004690 ORTHO05D005527 2.5e-76 289.7 286 62.6
ATR0019G027 Amborella trichopoda HOM05D004690 ORTHO05D005527 9.6e-76 287.7 269 65.1
CANSAT11G0185 Cannabis sativa HOM05D004690 ORTHO05D005527 1.2e-75 287.3 273 63.7
VMungo1215G2193 Vigna mungo HOM05D004690 ORTHO05D005527 2.1e-75 286.6 284 60.2
HanXRQChr10g0307591 Helianthus annuus HOM05D004690 ORTHO05D005527 2.8e-75 286.2 237 71.3
PSO111G0014 Papaver somniferum HOM05D004690 ORTHO05D005527 2.8e-75 286.2 288 60.8
PSO782G2525 Papaver somniferum HOM05D004690 ORTHO05D005527 6.2e-75 285.0 284 60.9
Cc06_g14700 Coffea canephora HOM05D004690 ORTHO05D005527 6.9e-74 281.6 285 62.8
FAN26G1928 Fragaria x ananassa HOM05D004690 ORTHO05D005527 6.9e-74 281.6 287 58.2
Aqoxy7G03362 Aquilegia oxysepala HOM05D004690 ORTHO05D005527 9.0e-74 281.2 277 62.1
BcaC02g08501 Brassica carinata HOM05D004690 ORTHO05D005527 1.2e-73 280.8 284 61.6
Haze_19160 Corylus avellana HOM05D004690 ORTHO05D005527 1.5e-73 280.4 320 58.4
Sp4g02970 Schrenkiella parvula HOM05D004690 ORTHO05D005527 3.4e-73 279.3 291 61.2
BcaB06g27964 Brassica carinata HOM05D004690 ORTHO05D005527 4.4e-73 278.9 284 60.9
Lj4g0007308 Lotus japonicus HOM05D004690 ORTHO05D005527 9.9e-73 277.7 282 60.3
Lalb_Chr12g0198781 Lupinus albus HOM05D004690 ORTHO05D005527 9.9e-73 277.7 192 74.5
ECA234G3490 Erigeron canadensis HOM05D004690 ORTHO05D005527 1.7e-72 276.9 264 64.4
Glyma.02G205700 Glycine max HOM05D004690 ORTHO05D005527 1.7e-72 276.9 285 62.8
BraA04t17449Z Brassica rapa HOM05D004690 ORTHO05D005527 2.2e-72 276.6 285 61.4
BolC4t26921H Brassica oleracea HOM05D004690 ORTHO05D005527 2.9e-72 276.2 285 61.4
HanXRQChr05g0138951 Helianthus annuus HOM05D004690 ORTHO05D005527 2.9e-72 276.2 268 64.2
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 2.9e-72 276.2 267 61.0
CARHR118290 Cardamine hirsuta HOM05D004690 ORTHO05D005527 3.8e-72 275.8 288 57.3
Lsat_1_v5_gn_8_63881 Lactuca sativa HOM05D004690 ORTHO05D005527 3.8e-72 275.8 224 71.9
Glyma.17G072300 Glycine max HOM05D004690 ORTHO05D005527 4.9e-72 275.4 261 61.7
Sc18g0003050 Simmondsia chinensis HOM05D004690 ORTHO05D005527 8.4e-72 274.6 304 60.2
MD15G1150400 Malus domestica HOM05D004690 ORTHO05D005527 1.1e-71 274.2 228 68.9
A04p18380 Brassica napus HOM05D004690 ORTHO05D005527 1.4e-71 273.9 285 61.1
BcaNung02747 Brassica carinata HOM05D004690 ORTHO05D005527 1.9e-71 273.5 226 69.9
C04p53650 Brassica napus HOM05D004690 ORTHO05D005527 1.9e-71 273.5 285 61.1
C07p58160 Brassica napus HOM05D004690 ORTHO05D005527 1.9e-71 273.5 226 69.9
BolC7t46275H Brassica oleracea HOM05D004690 ORTHO05D005527 1.9e-71 273.5 226 69.9
Carub.0004s0323 Capsella rubella HOM05D004690 ORTHO05D005527 1.9e-71 273.5 288 61.8
AL4G14110 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 2.4e-71 273.1 289 58.1
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 2.4e-71 273.1 289 58.5
Ah.09g228780 Amaranthus hybridus HOM05D004690 ORTHO05D005527 9.3e-71 271.2 303 58.4
ECA236G1766 Erigeron canadensis HOM05D004690 ORTHO05D005527 1.2e-70 270.8 227 70.5
Peaxi162Scf00401g00330 Petunia axillaris HOM05D004690 ORTHO05D005527 2.1e-70 270.0 290 59.7
vmacro16787 Vaccinium macrocarpon HOM05D004690 ORTHO05D005527 2.7e-70 269.6 348 51.4
A03p60250 Brassica napus HOM05D004690 ORTHO05D005527 7.8e-70 268.1 287 60.6
AT2G24060 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 1.7e-69 266.9 255 59.6
Glyma.04G154000 Glycine max HOM05D004690 ORTHO05D005527 1.7e-69 266.9 200 70.0
QL02p093831 Quercus lobata HOM05D004690 ORTHO05D005527 1.7e-69 266.9 236 68.6
ClCG02G014380 Citrullus lanatus HOM05D004690 ORTHO05D005527 2.3e-69 266.5 309 55.3
BraA03t15065Z Brassica rapa HOM05D004690 ORTHO05D005527 3.0e-69 266.2 288 60.8
CARHR238570 Cardamine hirsuta HOM05D004690 ORTHO05D005527 3.9e-69 265.8 290 57.6
Aa31LG7G12770 Aethionema arabicum HOM05D004690 ORTHO05D005527 5.1e-69 265.4 287 59.2
Thhalv10000269m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 6.6e-69 265.0 288 59.4
Thhalv10025935m.g Eutrema salsugineum HOM05D004690 ORTHO05D005527 8.7e-69 264.6 191 76.4
SalBow1G0331 Salvia bowleyana HOM05D004690 ORTHO05D005527 1.1e-68 264.2 286 55.9
Rhsim01G0027300 Rhododendron simsii HOM05D004690 ORTHO05D005527 1.9e-68 263.5 302 54.6
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 3.3e-68 262.7 264 60.2
Sabra18G0089400 Salix brachista HOM05D004690 ORTHO05D005527 4.3e-68 262.3 264 59.5
SGA_v2.0_scaffold63G21785 Striga asiatica HOM05D004690 ORTHO05D005527 4.3e-68 262.3 301 54.8
FAN28G2863 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.6e-68 261.9 285 55.8
Sp7g28600 Schrenkiella parvula HOM05D004690 ORTHO05D005527 1.3e-67 260.8 269 61.0
MELO3C004125.2 Cucumis melo HOM05D004690 ORTHO05D005527 2.1e-67 260.0 310 54.5
Potri.006G182000 Populus trichocarpa HOM05D004690 ORTHO05D005527 2.8e-67 259.6 222 67.1
MBI15_g27186_MAGBIO Magnolia biondii HOM05D004690 ORTHO05D005527 3.6e-67 259.2 287 59.2
EL10Ac8g18927 Beta vulgaris HOM05D004690 ORTHO05D005527 4.8e-67 258.8 283 57.2
AT4G30690 Arabidopsis thaliana HOM05D004690 ORTHO05D005527 6.2e-67 258.5 270 60.0
Medtr4g130530 Medicago truncatula HOM05D004690 ORTHO05D005527 8.1e-67 258.1 221 64.7
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 1.4e-66 257.3 209 66.0
FAN23G2407 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.3e-66 255.4 285 54.4
FAN23G2925 Fragaria x ananassa HOM05D004690 ORTHO05D005527 5.3e-66 255.4 285 54.4
CDE02G3377 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 1.5e-65 253.8 199 70.4
CAN.G160.27 Capsicum annuum HOM05D004690 ORTHO05D005527 7.6e-65 251.5 171 83.0
Nitab4.5_0002611g0030 Nicotiana tabacum HOM05D004690 ORTHO05D005527 2.2e-64 250.0 171 77.2
AL7G21430 Arabidopsis lyrata HOM05D004690 ORTHO05D005527 4.9e-64 248.8 273 59.0
BcaNung04824 Brassica carinata HOM05D004690 ORTHO05D005527 8.4e-64 248.1 187 74.3
Hund08935 Selenicereus undatus HOM05D004690 ORTHO05D005527 4.2e-63 245.7 295 54.9
Oeu054265.1 Olea europaea HOM05D004690 ORTHO05D005527 7.4e-60 235.0 151 79.5
Aa31LG2G19730 Aethionema arabicum HOM05D004690 ORTHO05D005527 9.6e-60 234.6 263 54.4
AUR62025348 Chenopodium quinoa HOM05D004690 ORTHO05D005527 3.7e-59 232.6 297 50.2
AUR62028351 Chenopodium quinoa HOM05D004690 ORTHO05D005527 3.7e-59 232.6 298 50.0
HPP92_018341 Vanilla planifolia HOM05D004690 ORTHO05D005527 1.4e-58 230.7 218 58.7
Zm00001eb257720 Zea mays HOM05D004690 ORTHO05D005527 3.4e-57 226.1 189 62.4
Lj7C462G3 Lonicera japonica HOM05D000062 ORTHO05D000043 6.4e-56 221.9 216 61.1
Os02g0794400 Oryza sativa ssp. japonica HOM05D004690 ORTHO05D005527 3.0e-53 213.0 191 61.8
Duzib150G0069 Durio zibethinus HOM05D004690 ORTHO05D005527 4.3e-52 209.1 286 50.3
CDE05G2888 Ceratophyllum demersum HOM05D004690 ORTHO05D005527 6.2e-51 205.3 187 61.0
Nn8g39977 Nelumbo nucifera HOM05D004690 ORTHO05D005527 4.0e-50 202.6 136 77.2
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 2.5e-47 193.4 222 52.3
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 6.3e-43 178.7 173 54.9
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.0e-41 173.7 220 50.0
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.0e-40 171.4 221 47.1
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 5.0e-40 169.1 201 48.3
Aa31LG3G8690 Aethionema arabicum HOM05D004690 ORTHO05D005527 3.6e-38 162.9 114 71.9
Actinidia38313 Actinidia chinensis HOM05D004690 ORTHO05D005527 4.6e-38 162.5 271 45.4
Manes.06G030800 Manihot esculenta HOM05D004690 ORTHO05D005527 4.3e-36 156.0 109 75.2
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 4.3e-36 156.0 271 39.9
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 5.7e-36 155.6 179 46.4
Hma1.2p1_0028F.1_g017670 Hydrangea macrophylla HOM05D004690 ORTHO05D005527 8.2e-35 151.8 156 60.3
Ca_21146_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 1.4e-34 151.0 104 73.1
Actinidia24377 Actinidia chinensis HOM05D004690 ORTHO05D005527 5.0e-32 142.5 104 76.0
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 2.3e-29 133.7 181 41.4
PGSC0003DMG400017027 Solanum tuberosum HOM05D004690 ORTHO05D005527 3.7e-27 126.3 67 91.0
Carub.0007s0984 Capsella rubella HOM05D004690 ORTHO05D005527 1.5e-25 120.9 158 53.8
Nn8g39976 Nelumbo nucifera HOM05D004690 ORTHO05D005527 2.2e-24 117.1 147 56.5
SEGI_13735 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 2.9e-24 116.7 125 51.2
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 2.5e-23 113.6 91 63.7
Dinv41359 Davidia involucrata HOM05D004690 ORTHO05D005527 1.6e-22 110.9 77 83.1
HanXRQChr10g0314901 Helianthus annuus HOM05D000214 ORTHO05D000131 2.8e-19 100.1 82 68.3
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 4.1e-18 96.3 159 34.6
BcaB06g27963 Brassica carinata HOM05D004690 ORTHO05D005527 1.6e-17 94.4 59 79.7
SEGI_33455 Sequoiadendron giganteum HOM05D004690 ORTHO05D005527 1.1e-15 88.2 76 64.5
Cre01.g001550 Chlamydomonas reinhardtii HOM05D004690 ORTHO05D005527 1.5e-15 87.8 149 33.6
FAN23G1872 Fragaria x ananassa HOM05D004690 ORTHO05D005527 8.3e-11 72.0 137 39.4
Ca_21142_v3 Cicer arietinum L. HOM05D004690 ORTHO05D005527 2.0e-09 67.4 86 52.3
Oeu054266.1 Olea europaea HOM05D004690 ORTHO05D005527 2.7e-09 67.0 50 72.0
A02p43620 Brassica napus HOM05D004690 ORTHO05D005527 3.5e-09 66.6 44 68.2
A02p43630 Brassica napus HOM05D004690 ORTHO05D005527 3.5e-09 66.6 44 68.2
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 7.7e-09 65.5 123 35.0
Actinidia24378 Actinidia chinensis HOM05D004690 ORTHO05D005527 2.9e-08 63.5 101 47.5
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 3.8e-08 63.2 112 33.9
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 5.0e-08 62.8 160 26.9
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 8.5e-08 62.0 161 28.6
BolC2t11481H Brassica oleracea HOM05D004690 ORTHO05D005527 1.1e-07 61.6 38 73.7
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 1.5e-07 61.2 134 35.1
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 1.5e-07 61.2 178 32.0
Medtr7g017820 Medicago truncatula HOM05D004690 ORTHO05D005527 2.5e-07 60.5 33 87.9
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 4.2e-07 59.7 148 29.7
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 5.5e-07 59.3 177 26.6
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.5e-07 59.3 177 26.6
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.5e-07 59.3 177 26.6
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 5.5e-07 59.3 140 28.6
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 9.4e-07 58.5 159 25.2
C06p03190 Brassica napus HOM05D004690 ORTHO05D005527 1.2e-06 58.2 37 70.3
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.2e-06 58.2 177 26.0
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 1.6e-06 57.8 183 27.9
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 1.6e-06 57.8 116 30.2
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 2.1e-06 57.4 185 27.6
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 2.1e-06 57.4 140 28.6
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 2.7e-06 57.0 185 27.6
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 2.7e-06 57.0 113 29.2
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 3.6e-06 56.6 138 30.4
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 3.6e-06 56.6 140 25.7
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 4.7e-06 56.2 152 28.9
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 4.7e-06 56.2 132 31.1
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 6.1e-06 55.8 185 27.0
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 6.1e-06 55.8 185 27.0
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 6.1e-06 55.8 185 27.0
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 6.1e-06 55.8 185 27.0
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 6.1e-06 55.8 185 27.0
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 6.1e-06 55.8 177 31.6
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 8.0e-06 55.5 206 27.7


User provided reference genes

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