Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43207 Davidia involucrata HOM05D006152 ORTHO05D008137 1.6e-91 339.3 167 100.0
Dinv42894 Davidia involucrata HOM05D006152 ORTHO05D008137 4.4e-89 331.3 162 100.0
Actinidia38346 Actinidia chinensis HOM05D006152 ORTHO05D008137 7.3e-68 260.8 159 82.4
TWI32G1323 Tripterygium wilfordii HOM05D006152 ORTHO05D008137 2.9e-64 248.8 160 76.2
Hma1.2p1_0222F.1_g093200 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 8.4e-64 247.3 129 91.5
CiPaw.16G115700 Carya illinoinensis HOM05D006152 ORTHO05D008137 1.1e-63 246.9 159 75.5
TAR383G0013 Trochodendron aralioides HOM05D006152 ORTHO05D008137 1.9e-63 246.1 159 77.4
Nn2g12295 Nelumbo nucifera HOM05D006152 ORTHO05D008137 2.4e-63 245.7 156 76.9
Manes.06G038100 Manihot esculenta HOM05D006152 ORTHO05D008137 3.2e-63 245.4 161 75.2
Thecc.09G035000 Theobroma cacao HOM05D006152 ORTHO05D008137 2.7e-62 242.3 161 75.8
Sopen07g001260 Solanum pennellii HOM05D006152 ORTHO05D008137 8.7e-61 237.3 160 74.4
Prupe.7G259100 Prunus persica HOM05D006152 ORTHO05D008137 1.1e-60 236.9 164 70.1
Oeu043492.1 Olea europaea HOM05D006152 ORTHO05D008137 1.9e-60 236.1 163 73.0
Gohir.D05G052200 Gossypium hirsutum HOM05D006152 ORTHO05D008137 2.5e-60 235.7 163 73.0
Gorai.009G054000 Gossypium raimondii HOM05D006152 ORTHO05D008137 2.5e-60 235.7 163 73.0
Solyc07g005120.3 Solanum lycopersicum HOM05D006152 ORTHO05D008137 3.3e-60 235.3 160 73.8
Ciclev10008799m.g Citrus clementina HOM05D006152 ORTHO05D008137 8.1e-59 230.7 162 71.0
Lsat_1_v5_gn_5_90820 Lactuca sativa HOM05D006152 ORTHO05D008137 1.8e-58 229.6 172 68.6
PGR142G2956 Punica granatum HOM05D006152 ORTHO05D008137 2.4e-58 229.2 150 74.7
DCAR_019366 Daucus carota HOM05D006152 ORTHO05D008137 5.3e-58 228.0 170 68.2
Migut.K00351 Erythranthe guttata HOM05D006152 ORTHO05D008137 5.3e-58 228.0 159 70.4
HanXRQChr10g0314551 Helianthus annuus HOM05D006152 ORTHO05D008137 9.0e-58 227.3 167 71.3
MSTRG.26302 Avicennia marina HOM05D006152 ORTHO05D008137 8.4e-56 220.7 129 79.1
MD02G1011000 Malus domestica HOM05D006152 ORTHO05D008137 3.2e-55 218.8 127 78.0
RcHm_v2.0_Chr2g0086151 Rosa chinensis HOM05D006152 ORTHO05D008137 4.2e-55 218.4 163 66.3
Aqoxy1G03917 Aquilegia oxysepala HOM05D006152 ORTHO05D008137 5.5e-55 218.0 128 78.9
Lj4g0021784 Lotus japonicus HOM05D006152 ORTHO05D008137 1.2e-54 216.9 162 66.7
Glyma.13G155700 Glycine max HOM05D006152 ORTHO05D008137 2.7e-54 215.7 161 63.4
QL02p092448 Quercus lobata HOM05D006152 ORTHO05D008137 4.6e-54 214.9 208 56.2
FvH4_1g01320 Fragaria vesca HOM05D006152 ORTHO05D008137 1.0e-53 213.8 160 66.2
Lalb_Chr12g0198561 Lupinus albus HOM05D006152 ORTHO05D008137 1.0e-53 213.8 160 65.0
Sabra06G0143900 Salix brachista HOM05D006152 ORTHO05D008137 1.8e-53 213.0 177 63.3
Sabra06G0145100 Salix brachista HOM05D006152 ORTHO05D008137 1.8e-53 213.0 177 63.3
Eucgr.C00382 Eucalyptus grandis HOM05D006152 ORTHO05D008137 8.7e-53 210.7 163 64.4
CsaV3_2G003440 Cucumis sativus L. HOM05D006152 ORTHO05D008137 1.1e-52 210.3 161 66.5
Rhsim01G0042700 Rhododendron simsii HOM05D006152 ORTHO05D008137 3.3e-52 208.8 214 56.1
Phvul.003G158400 Phaseolus vulgaris HOM05D006152 ORTHO05D008137 4.3e-52 208.4 162 63.6
Medtr4g131670 Medicago truncatula HOM05D006152 ORTHO05D008137 7.4e-52 207.6 126 73.8
Sed0008154 Sechium edule HOM05D006152 ORTHO05D008137 9.6e-52 207.2 161 65.2
Hund21620 Selenicereus undatus HOM05D006152 ORTHO05D008137 4.8e-51 204.9 126 75.4
ECA234G4022 Erigeron canadensis HOM05D000464 ORTHO05D000408 1.8e-50 203.0 131 71.8
HPP92_017513 Vanilla planifolia HOM05D006152 ORTHO05D008137 4.0e-50 201.8 150 63.3
AUR62041375 Chenopodium quinoa HOM05D001472 ORTHO05D002655 9.0e-50 200.7 130 70.0
TPR.G37046 Trifolium pratense HOM05D006152 ORTHO05D008137 1.2e-49 200.3 128 70.3
AUR62010759 Chenopodium quinoa HOM05D001472 ORTHO05D002655 1.5e-49 199.9 157 64.3
Rhsim01G0046600 Rhododendron simsii HOM05D006152 ORTHO05D008137 1.5e-49 199.9 172 62.8
TPR.G6509 Trifolium pratense HOM05D006152 ORTHO05D008137 2.0e-49 199.5 134 66.4
Carub.0008s1874 Capsella rubella HOM05D006152 ORTHO05D008137 2.6e-49 199.1 131 77.1
Os06g0182400 Oryza sativa ssp. japonica HOM05D006152 ORTHO05D008137 3.4e-49 198.7 123 71.5
SalBow1G4451 Salvia bowleyana HOM05D001472 ORTHO05D002655 5.8e-49 198.0 145 64.8
Cc06_g15390 Coffea canephora HOM05D006152 ORTHO05D008137 7.6e-49 197.6 148 64.9
Peaxi162Scf00347g00517 Petunia axillaris HOM05D006152 ORTHO05D008137 1.0e-48 197.2 217 51.6
arahy.Tifrunner.gnm1.ann1.QAR9AW Arachis hypogaea HOM05D006152 ORTHO05D008137 1.7e-48 196.4 161 62.7
SalBow5G3728 Salvia bowleyana HOM05D001472 ORTHO05D002655 1.7e-48 196.4 145 64.1
Zm00001eb374780 Zea mays HOM05D006152 ORTHO05D008137 1.7e-48 196.4 127 70.9
Ah.04g162170 Amaranthus hybridus HOM05D006152 ORTHO05D008137 2.2e-48 196.1 128 69.5
Haze_19246 Corylus avellana HOM05D006152 ORTHO05D008137 1.1e-47 193.7 161 63.4
CSS0025720 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 3.5e-46 188.7 101 87.1
SEGI_04227 Sequoiadendron giganteum HOM05D006152 ORTHO05D008137 3.5e-46 188.7 135 63.7
SGA_v2.0_scaffold387G50519 Striga asiatica HOM05D006152 ORTHO05D008137 4.6e-46 188.3 213 50.7
Cpa.g.sc46.115 Carica papaya HOM05D006152 ORTHO05D008137 1.0e-45 187.2 168 63.1
CSS0018805 Camellia sinensis var. sinensis HOM05D006152 ORTHO05D008137 2.3e-45 186.0 101 88.1
THA.LOC104811841 Tarenaya hassleriana HOM05D006152 ORTHO05D008137 2.3e-45 186.0 131 73.3
AT5G58200 Arabidopsis thaliana HOM05D006152 ORTHO05D008137 3.9e-45 185.3 134 68.7
Sp6g19860 Schrenkiella parvula HOM05D006152 ORTHO05D008137 3.9e-45 185.3 128 70.3
BcaB05g22408 Brassica carinata HOM05D006152 ORTHO05D008137 8.7e-45 184.1 134 68.7
MD15G1156000 Malus domestica HOM05D006152 ORTHO05D008137 1.5e-44 183.3 220 47.7
PSO384G3563 Papaver somniferum HOM05D006152 ORTHO05D008137 5.7e-44 181.4 137 64.2
PSO384G4708 Papaver somniferum HOM05D006152 ORTHO05D008137 5.7e-44 181.4 137 64.2
A02p07870 Brassica napus HOM05D006152 ORTHO05D008137 7.4e-44 181.0 131 69.5
Thhalv10014084m.g Eutrema salsugineum HOM05D006152 ORTHO05D008137 9.7e-44 180.6 131 70.2
AL8G34300 Arabidopsis lyrata HOM05D006152 ORTHO05D008137 1.6e-43 179.9 132 67.4
C02p13510 Brassica napus HOM05D006152 ORTHO05D008137 1.1e-42 177.2 131 67.9
arahy.Tifrunner.gnm1.ann1.L77CZK Arachis hypogaea HOM05D006152 ORTHO05D008137 1.4e-42 176.8 200 50.5
FAN23G2003 Fragaria x ananassa HOM05D006152 ORTHO05D008137 7.6e-41 171.0 170 55.3
Lj7A453G70 Lonicera japonica HOM05D006152 ORTHO05D008137 7.6e-41 171.0 114 73.7
BraA02t05860Z Brassica rapa HOM05D006152 ORTHO05D008137 1.3e-40 170.2 145 62.8
BcaC03g14112 Brassica carinata HOM05D006152 ORTHO05D008137 2.9e-40 169.1 142 63.4
CARHR272000 Cardamine hirsuta HOM05D006152 ORTHO05D008137 3.8e-40 168.7 116 71.6
Gohir.A05G050600 Gossypium hirsutum HOM05D006152 ORTHO05D008137 6.5e-40 167.9 92 82.6
BolC2t07463H Brassica oleracea HOM05D006152 ORTHO05D008137 4.2e-39 165.2 142 62.0
Sc14g0000030 Simmondsia chinensis HOM05D006152 ORTHO05D008137 2.7e-38 162.5 97 76.3
GSVIVG01001075001 Vitis vinifera HOM05D006152 ORTHO05D008137 2.7e-38 162.5 92 82.6
Pp3c26_6540 Physcomitrium patens HOM05D006152 ORTHO05D008137 6.1e-38 161.4 126 60.3
Duzib168G0440 Durio zibethinus HOM05D006152 ORTHO05D008137 7.9e-38 161.0 120 69.2
Nitab4.5_0001094g0060 Nicotiana tabacum HOM05D006152 ORTHO05D008137 1.5e-36 156.8 170 53.5
AUR62038836 Chenopodium quinoa HOM05D001472 ORTHO05D008137 2.5e-36 156.0 130 60.0
GSVIVG01003719001 Vitis vinifera HOM05D006152 ORTHO05D008137 7.4e-36 154.5 86 84.9
Nitab4.5_0003856g0050 Nicotiana tabacum HOM05D006152 ORTHO05D008137 9.7e-36 154.1 160 55.0
PGR142G1207 Punica granatum HOM05D006152 ORTHO05D008137 9.7e-36 154.1 115 67.8
Mapoly0124s0018 Marchantia polymorpha HOM05D006152 ORTHO05D008137 8.2e-35 151.0 156 49.4
AagrBONN_evm.TU.Sc2ySwM_228.5740 Anthoceros agrestis HOM05D006152 ORTHO05D008137 1.8e-34 149.8 166 49.4
MD00G1188400 Malus domestica HOM05D006152 ORTHO05D008137 4.1e-34 148.7 91 75.8
FvH4_1g01380 Fragaria vesca HOM05D006152 ORTHO05D008137 1.2e-33 147.1 92 73.9
SMO347G0290 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 7.7e-33 144.4 111 58.6
ATR0184G013 Amborella trichopoda HOM05D006152 ORTHO05D008137 1.3e-32 143.7 92 72.8
PSO339G6042 Papaver somniferum HOM05D006152 ORTHO05D008137 3.8e-32 142.1 91 72.5
AUR62019760 Chenopodium quinoa HOM05D001472 ORTHO05D002655 8.5e-32 141.0 91 72.5
unitig_899.g15450 Utricularia gibba HOM05D006152 ORTHO05D003911 3.2e-31 139.0 154 46.8
CARHR032820 Cardamine hirsuta HOM05D006152 ORTHO05D008137 4.7e-30 135.2 95 71.6
FvH4_1g01360 Fragaria vesca HOM05D006152 ORTHO05D045810 1.8e-29 133.3 105 61.9
SMO356G0422 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 2.3e-29 132.9 132 48.5
SMO169G0164 Selaginella moellendorffii HOM05D006152 ORTHO05D008137 8.8e-29 131.0 153 43.8
CDE05G0292 Ceratophyllum demersum HOM05D006152 ORTHO05D008137 1.4e-26 123.6 147 46.3
AUR62002687 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.8e-26 123.2 91 65.9
Cre17.g729650 Chlamydomonas reinhardtii HOM05D006152 ORTHO05D008137 3.2e-23 112.5 146 42.5
Hma1.2p1_0222F.1_g093210 Hydrangea macrophylla HOM05D006152 ORTHO05D008137 7.2e-23 111.3 57 91.2
EL10Ac8g18846 Beta vulgaris HOM05D006152 ORTHO05D008137 9.4e-23 110.9 145 46.9
vmacro13046 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 6.1e-22 108.2 124 49.2
vmacro23231 Vaccinium macrocarpon HOM05D006152 ORTHO05D008137 6.1e-22 108.2 124 49.2
Migut.K01256 Erythranthe guttata HOM05D006152 ORTHO05D008137 1.2e-17 94.0 70 60.0
VMungo1215G1041 Vigna mungo HOM05D006152 ORTHO05D008137 1.0e-16 90.9 54 72.2
MELO3C004453.2 Cucumis melo HOM05D006152 ORTHO05D008137 1.7e-16 90.1 54 75.9
AUR62017200 Chenopodium quinoa HOM05D006152 ORTHO05D008137 1.0e-13 80.9 52 75.0
MD00G1188300 Malus domestica HOM05D006152 ORTHO05D029506 5.2e-13 78.6 75 56.0
CAN.G520.14 Capsicum annuum HOM05D006152 ORTHO05D008137 8.8e-13 77.8 42 81.0
MBI15_g30906_MAGBIO Magnolia biondii HOM05D006152 ORTHO05D008137 8.8e-13 77.8 42 83.3
FvH4_1g01381 Fragaria vesca HOM05D006152 ORTHO05D029506 1.2e-12 77.4 71 57.7
QL02p092408 Quercus lobata HOM05D006152 ORTHO05D008137 1.5e-12 77.0 42 78.6
COL.COLO4_18762 Corchorus olitorius HOM05D006152 ORTHO05D008137 4.4e-12 75.5 43 74.4
FAN26G1951 Fragaria x ananassa HOM05D006152 ORTHO05D029506 2.8e-11 72.8 71 57.7
Psat4g007440 Pisum sativum HOM05D006152 ORTHO05D008137 2.8e-11 72.8 42 71.4
AUR62029567 Chenopodium quinoa HOM05D001472 ORTHO05D015242 4.8e-11 72.0 57 59.6
FAN19G2321 Fragaria x ananassa HOM05D006152 ORTHO05D029506 1.8e-10 70.1 54 64.8
FAN19G0239 Fragaria x ananassa HOM05D006152 ORTHO05D045810 9.4e-07 57.8 65 49.2
PGSC0003DMG400003198 Solanum tuberosum HOM05D006152 ORTHO05D008137 4.7e-06 55.5 32 78.1


User provided reference genes

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