Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 5.7e-125 451.1 247 100.0
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 5.7e-125 451.1 247 100.0
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 5.7e-125 451.1 247 100.0
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 2.5e-40 169.9 162 64.2
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 9.0e-30 134.8 164 53.7
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.2e-29 134.4 175 53.1
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 5.8e-29 132.1 188 49.5
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.7e-28 130.6 173 52.0
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 4.2e-27 125.9 182 48.9
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 1.2e-26 124.4 182 48.9
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 8.7e-25 118.2 175 46.9
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 2.1e-23 113.6 170 48.2
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 2.8e-23 113.2 185 45.4
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.8e-22 110.5 159 48.4
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 2.4e-22 110.2 161 48.4
Sabra16G0144100 Salix brachista HOM05D005967 ORTHO05D005174 2.0e-21 107.1 171 48.5
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 3.4e-21 106.3 176 47.2
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 4.5e-21 105.9 181 42.0
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 5.8e-21 105.5 189 41.3
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 8.4e-20 101.7 135 52.6
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 8.4e-20 101.7 162 45.1
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 2.5e-19 100.1 165 46.1
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 2.5e-19 100.1 164 45.7
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 5.5e-19 99.0 177 44.1
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 1.6e-18 97.4 165 41.2
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.7e-18 96.7 173 43.4
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.7e-18 96.7 170 42.4
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 2.7e-18 96.7 164 42.7
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.5e-18 96.3 170 41.8
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 6.0e-18 95.5 185 41.1
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 7.9e-18 95.1 156 48.1
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 7.9e-18 95.1 160 46.2
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.0e-17 94.7 170 42.4
MD03G1095400 Malus domestica HOM05D005967 ORTHO05D005174 1.8e-17 94.0 163 46.0
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 2.3e-17 93.6 168 40.5
DCAR_005325 Daucus carota HOM05D005967 ORTHO05D005174 3.9e-17 92.8 140 41.4
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 3.3e-16 89.7 162 38.9
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 9.6e-16 88.2 187 38.0
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 2.1e-15 87.0 190 38.4
TAR636G2062 Trochodendron aralioides HOM05D000645 ORTHO05D000494 2.1e-15 87.0 149 42.3
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 4.8e-15 85.9 200 38.0
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 6.3e-15 85.5 114 45.6
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 6.3e-15 85.5 90 62.2
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 1.1e-14 84.7 160 39.4
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.4e-14 83.6 88 62.5
Peaxi162Scf00832g00006 Petunia axillaris HOM05D030065 ORTHO05D005174 9.0e-14 81.6 148 39.2
DCAR_005974 Daucus carota HOM05D005967 ORTHO05D005174 1.5e-13 80.9 147 42.2
Sp4g11680 Schrenkiella parvula HOM05D010012 ORTHO05D012171 2.6e-13 80.1 147 38.8
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 4.5e-13 79.3 121 38.0
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 5.9e-13 79.0 76 57.9
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 5.9e-13 79.0 113 45.1
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 7.6e-13 78.6 170 39.4
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 2.2e-12 77.0 95 52.6
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 2.9e-12 76.6 136 39.0
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 2.9e-12 76.6 92 53.3
FAN16G3022 Fragaria x ananassa HOM05D005967 ORTHO05D005174 8.4e-12 75.1 106 53.8
FAN21G3710 Fragaria x ananassa HOM05D005967 ORTHO05D005174 8.4e-12 75.1 106 53.8
Peaxi162Scf00679g00042 Petunia axillaris HOM05D005967 ORTHO05D014046 8.4e-12 75.1 137 36.5
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 8.4e-12 75.1 169 37.9
FAN11G1916 Fragaria x ananassa HOM05D005967 ORTHO05D005174 1.1e-11 74.7 106 52.8
Oeu019207.1 Olea europaea HOM05D005967 ORTHO05D005174 1.1e-11 74.7 140 45.0
RcHm_v2.0_Chr5g0064301 Rosa chinensis HOM05D005967 ORTHO05D005174 1.1e-11 74.7 107 53.3
BcaC01g04994 Brassica carinata HOM05D010012 ORTHO05D012171 1.4e-11 74.3 153 36.6
C03p31310 Brassica napus HOM05D010012 ORTHO05D012171 1.4e-11 74.3 153 36.6
BolC3t15480H Brassica oleracea HOM05D010012 ORTHO05D012171 1.4e-11 74.3 153 36.6
FvH4_3g35950 Fragaria vesca HOM05D005967 ORTHO05D005174 1.4e-11 74.3 106 52.8
Rhsim01G0227100 Rhododendron simsii HOM05D005967 ORTHO05D005174 1.4e-11 74.3 115 47.0
BcaC02g08129 Brassica carinata HOM05D010012 ORTHO05D012171 1.9e-11 73.9 148 38.5
C04p58060 Brassica napus HOM05D010012 ORTHO05D012171 1.9e-11 73.9 148 38.5
BolC4t27332H Brassica oleracea HOM05D010012 ORTHO05D012171 1.9e-11 73.9 148 38.5
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 2.5e-11 73.6 89 44.9
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 3.2e-11 73.2 153 39.2
A04p21920 Brassica napus HOM05D010012 ORTHO05D012171 4.2e-11 72.8 147 38.8
BcaB01g03127 Brassica carinata HOM05D010012 ORTHO05D012171 7.2e-11 72.0 134 38.8
BraA03t11837Z Brassica rapa HOM05D010012 ORTHO05D012171 7.2e-11 72.0 134 38.8
Dinv05346 Davidia involucrata HOM05D052952 ORTHO05D005174 7.2e-11 72.0 41 90.2
Dinv20654 Davidia involucrata HOM05D052952 ORTHO05D005174 7.2e-11 72.0 41 90.2
Dinv34591 Davidia involucrata HOM05D000077 ORTHO05D000552 7.2e-11 72.0 41 90.2
Dinv37029 Davidia involucrata HOM05D000951 ORTHO05D001597 7.2e-11 72.0 41 90.2
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 7.2e-11 72.0 115 38.3
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 7.2e-11 72.0 168 38.7
A03p26230 Brassica napus HOM05D010012 ORTHO05D012171 9.3e-11 71.6 134 38.8
FAN25G3118 Fragaria x ananassa HOM05D005967 ORTHO05D005174 9.3e-11 71.6 106 51.9
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 1.2e-10 71.2 73 57.5
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 2.1e-10 70.5 84 50.0
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 2.1e-10 70.5 77 55.8
AL4G23400 Arabidopsis lyrata HOM05D010012 ORTHO05D012171 2.7e-10 70.1 163 30.7
Eucgr.B02374 Eucalyptus grandis HOM05D005967 ORTHO05D005174 2.7e-10 70.1 118 42.4
BcaB02g10207 Brassica carinata HOM05D010012 ORTHO05D012171 3.5e-10 69.7 145 33.1
Cpa.g.sc81.161 Carica papaya HOM05D005967 ORTHO05D005174 4.6e-10 69.3 91 52.7
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 4.6e-10 69.3 170 37.1
Carub.0004s0986 Capsella rubella HOM05D010012 ORTHO05D012171 6.1e-10 68.9 156 32.7
Oeu054156.1 Olea europaea HOM05D005967 ORTHO05D005174 7.9e-10 68.6 81 56.8
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 1.0e-09 68.2 132 40.2
Thhalv10017378m.g Eutrema salsugineum HOM05D010012 ORTHO05D012171 1.0e-09 68.2 153 34.6
CARHR122020 Cardamine hirsuta HOM05D010012 ORTHO05D012171 1.3e-09 67.8 162 33.3
Rhsim05G0192000 Rhododendron simsii HOM05D005967 ORTHO05D005174 2.3e-09 67.0 124 37.1
AT2G28870 Arabidopsis thaliana HOM05D010012 ORTHO05D012171 3.9e-09 66.2 158 32.9
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 3.9e-09 66.2 91 46.2
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 5.1e-09 65.9 82 50.0
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 5.1e-09 65.9 116 40.5
BcaB06g28260 Brassica carinata HOM05D010012 ORTHO05D012171 6.7e-09 65.5 155 32.9
VMungo1080G1048 Vigna mungo HOM05D005967 ORTHO05D005174 6.7e-09 65.5 72 52.8
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 8.7e-09 65.1 92 44.6
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 1.1e-08 64.7 93 44.1
BcaC02g11018 Brassica carinata HOM05D010012 ORTHO05D012171 1.5e-08 64.3 145 32.4
C04p22150 Brassica napus HOM05D010012 ORTHO05D012171 1.5e-08 64.3 145 32.4
BolC4t23735H Brassica oleracea HOM05D010012 ORTHO05D012171 1.5e-08 64.3 145 32.4
Dinv20102 Davidia involucrata HOM05D000221 ORTHO05D184739 1.5e-08 64.3 42 85.7
Migut.N02671 Erythranthe guttata HOM05D005967 ORTHO05D005174 1.5e-08 64.3 113 41.6
Glyma.13G335500 Glycine max HOM05D005967 ORTHO05D005174 1.5e-08 64.3 85 45.9
Glyma.08G358900 Glycine max HOM05D005967 ORTHO05D005174 3.3e-08 63.2 102 42.2
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 4.3e-08 62.8 132 39.4
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 7.4e-08 62.0 119 39.5
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 7.4e-08 62.0 103 38.8
Ca_28209_v3 Cicer arietinum L. HOM05D005967 ORTHO05D005174 9.7e-08 61.6 89 49.4
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 9.7e-08 61.6 92 43.5
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 1.6e-07 60.8 80 53.8
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.8e-07 60.1 78 46.2
A07p19320 Brassica napus HOM05D010012 ORTHO05D012171 3.7e-07 59.7 133 32.3
BraA07t29637Z Brassica rapa HOM05D010012 ORTHO05D012171 3.7e-07 59.7 133 32.3
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 3.7e-07 59.7 78 47.4
Phvul.L004943 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 3.7e-07 59.7 91 44.0
VMungo1309G2816 Vigna mungo HOM05D005967 ORTHO05D005174 3.7e-07 59.7 63 49.2
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 1.1e-06 58.2 106 38.7
PGR004G0898 Punica granatum HOM05D005967 ORTHO05D005174 1.1e-06 58.2 131 36.6
FAN02G3432 Fragaria x ananassa HOM05D018126 ORTHO05D020711 1.4e-06 57.8 118 35.6
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 1.4e-06 57.8 80 47.5
EL10As1g23034 Beta vulgaris HOM05D005967 ORTHO05D005174 1.8e-06 57.4 88 50.0
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 1.8e-06 57.4 99 41.4
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 1.8e-06 57.4 84 41.7
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 3.1e-06 56.6 116 38.8
Psat3g141040 Pisum sativum HOM05D005967 ORTHO05D005174 3.1e-06 56.6 79 48.1
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 4.1e-06 56.2 89 43.8
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 4.1e-06 56.2 167 32.9
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 4.1e-06 56.2 167 32.9
Aa31LG1G22380 Aethionema arabicum HOM05D010528 ORTHO05D005174 9.0e-06 55.1 108 38.9
SalBow4G0071 Salvia bowleyana HOM05D005967 ORTHO05D005174 9.0e-06 55.1 112 35.7
VMungo1383G3210 Vigna mungo HOM05D005967 ORTHO05D005174 9.0e-06 55.1 113 37.2


User provided reference genes

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