Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17003 Davidia involucrata HOM05D003862 ORTHO05D004398 1.2e-46 189.5 94 100.0
Dinv42952 Davidia involucrata HOM05D003862 ORTHO05D004398 1.2e-46 189.5 94 100.0
Dinv43148 Davidia involucrata HOM05D003862 ORTHO05D004398 1.2e-46 189.5 94 100.0
CSS0028919 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 1.9e-44 182.2 94 95.7
CSS0038231 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 1.9e-44 182.2 94 95.7
Oeu014415.1 Olea europaea HOM05D003862 ORTHO05D004398 1.9e-44 182.2 94 95.7
Oeu032100.1 Olea europaea HOM05D003862 ORTHO05D004398 4.2e-44 181.0 94 94.7
Cc10_g12100 Coffea canephora HOM05D003862 ORTHO05D004398 1.2e-43 179.5 94 93.6
TAR369G0814 Trochodendron aralioides HOM05D003862 ORTHO05D004398 1.2e-43 179.5 94 94.7
Hma1.2p1_0936F.1_g238710 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 1.6e-43 179.1 94 92.6
Hma1.2p1_1513F.1_g287975 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 1.6e-43 179.1 94 92.6
Migut.D00467 Erythranthe guttata HOM05D003862 ORTHO05D004398 2.1e-43 178.7 94 92.6
SalBow5G2575 Salvia bowleyana HOM05D003862 ORTHO05D004398 2.1e-43 178.7 94 92.6
MBI05_g22042_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 2.7e-43 178.3 94 92.6
TAR636G2804 Trochodendron aralioides HOM05D003862 ORTHO05D004398 4.6e-43 177.6 94 92.6
GSVIVG01024961001 Vitis vinifera HOM05D003862 ORTHO05D004398 4.6e-43 177.6 94 92.6
HPP92_018126 Vanilla planifolia HOM05D003862 ORTHO05D004398 7.8e-43 176.8 94 91.5
HPP92_018144 Vanilla planifolia HOM05D003862 ORTHO05D004398 7.8e-43 176.8 94 91.5
RcHm_v2.0_Chr5g0064531 Rosa chinensis HOM05D003862 ORTHO05D004398 1.7e-42 175.6 94 91.5
Migut.D01636 Erythranthe guttata HOM05D003862 ORTHO05D004398 2.3e-42 175.3 94 90.4
Cfa011504 Carpinus fangiana HOM05D003862 ORTHO05D004398 3.0e-42 174.9 94 91.5
MD11G1108200 Malus domestica HOM05D003862 ORTHO05D004398 3.0e-42 174.9 94 90.4
vmacro20157 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 3.0e-42 174.9 94 91.5
CDE07G2069 Ceratophyllum demersum HOM05D003862 ORTHO05D004398 5.1e-42 174.1 94 91.5
PSO063G5647 Papaver somniferum HOM05D003862 ORTHO05D004398 5.1e-42 174.1 93 87.1
PSO339G2698 Papaver somniferum HOM05D003862 ORTHO05D004398 5.1e-42 174.1 93 87.1
PSO384G2795 Papaver somniferum HOM05D003862 ORTHO05D004398 5.1e-42 174.1 93 87.1
Os12g0571200 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 6.6e-42 173.7 94 88.3
Prupe.6G077400 Prunus persica HOM05D003862 ORTHO05D004398 8.7e-42 173.3 94 90.4
Lsat_1_v5_gn_4_177081 Lactuca sativa HOM05D003862 ORTHO05D004398 1.1e-41 172.9 94 88.3
Lsat_1_v5_gn_5_170681 Lactuca sativa HOM05D003862 ORTHO05D004398 1.1e-41 172.9 94 88.3
unitig_21.g20465 Utricularia gibba HOM05D003164 ORTHO05D003575 1.5e-41 172.6 93 88.2
Nitab4.5_0000349g0310 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.9e-41 172.2 94 88.3
Nitab4.5_0001911g0090 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.9e-41 172.2 94 88.3
unitig_744.g24379 Utricularia gibba HOM05D003862 ORTHO05D004398 1.9e-41 172.2 93 87.1
CiPaw.09G192600 Carya illinoinensis HOM05D003862 ORTHO05D004398 2.5e-41 171.8 94 90.4
DCAR_030095 Daucus carota HOM05D003862 ORTHO05D004398 3.3e-41 171.4 94 88.3
Cfa017379 Carpinus fangiana HOM05D003862 ORTHO05D004398 4.3e-41 171.0 94 90.4
Haze_20791 Corylus avellana HOM05D003862 ORTHO05D004398 4.3e-41 171.0 94 90.4
CiPaw.14G068400 Carya illinoinensis HOM05D003862 ORTHO05D004398 5.6e-41 170.6 94 88.3
HanXRQChr05g0136091 Helianthus annuus HOM05D003862 ORTHO05D004398 5.6e-41 170.6 93 88.2
Lalb_Chr03g0026631 Lupinus albus HOM05D003862 ORTHO05D004398 9.6e-41 169.9 94 89.4
GSVIVG01034172001 Vitis vinifera HOM05D003862 ORTHO05D004398 9.6e-41 169.9 94 90.4
EL10Ac5g11591 Beta vulgaris HOM05D003862 ORTHO05D004398 1.3e-40 169.5 94 85.1
Peaxi162Scf00330g00415 Petunia axillaris HOM05D003862 ORTHO05D004398 1.3e-40 169.5 94 85.1
CAN.G1195.10 Capsicum annuum HOM05D003862 ORTHO05D004398 2.1e-40 168.7 94 85.1
Lalb_Chr19g0137831 Lupinus albus HOM05D003862 ORTHO05D004398 2.1e-40 168.7 94 88.3
PGSC0003DMG400019201 Solanum tuberosum HOM05D003862 ORTHO05D004398 2.1e-40 168.7 94 85.1
Hund10643 Selenicereus undatus HOM05D003862 ORTHO05D004398 2.8e-40 168.3 94 86.2
Solyc10g086510.2 Solanum lycopersicum HOM05D003862 ORTHO05D004398 3.6e-40 167.9 94 84.0
Sopen10g035890 Solanum pennellii HOM05D003862 ORTHO05D004398 3.6e-40 167.9 94 84.0
AUR62038108 Chenopodium quinoa HOM05D003862 ORTHO05D004398 4.8e-40 167.5 94 85.1
Glyma.12G063000 Glycine max HOM05D003862 ORTHO05D004398 4.8e-40 167.5 94 88.3
ClCG10G021140 Citrullus lanatus HOM05D003862 ORTHO05D004398 6.2e-40 167.2 94 86.2
FvH4_3g36110 Fragaria vesca HOM05D003862 ORTHO05D004398 6.2e-40 167.2 93 87.1
FAN11G3597 Fragaria x ananassa HOM05D003862 ORTHO05D004398 6.2e-40 167.2 93 87.1
FAN16G1598 Fragaria x ananassa HOM05D003862 ORTHO05D004398 6.2e-40 167.2 93 87.1
FAN21G0907 Fragaria x ananassa HOM05D003862 ORTHO05D004398 6.2e-40 167.2 93 87.1
FAN25G1864 Fragaria x ananassa HOM05D003862 ORTHO05D004398 6.2e-40 167.2 93 87.1
Nitab4.5_0006455g0030 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.1e-39 166.4 94 86.2
Sed0022625 Sechium edule HOM05D003862 ORTHO05D004398 1.1e-39 166.4 94 87.2
Ah.02g115390 Amaranthus hybridus HOM05D003862 ORTHO05D004398 1.4e-39 166.0 94 84.0
MELO3C009258.2 Cucumis melo HOM05D003862 ORTHO05D004398 1.4e-39 166.0 94 85.1
CsaV3_3G034900 Cucumis sativus L. HOM05D003862 ORTHO05D004398 1.4e-39 166.0 94 85.1
AUR62025808 Chenopodium quinoa HOM05D003862 ORTHO05D004398 1.8e-39 165.6 94 84.0
Glyma.11G139400 Glycine max HOM05D003862 ORTHO05D004398 1.8e-39 165.6 94 87.2
Nitab4.5_0002018g0010 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.8e-39 165.6 94 85.1
PGR102G0842 Punica granatum HOM05D003862 ORTHO05D004398 1.8e-39 165.6 94 85.1
Sed0018689 Sechium edule HOM05D003862 ORTHO05D004398 1.8e-39 165.6 94 86.2
Ca_19161_v3 Cicer arietinum L. HOM05D003862 ORTHO05D004398 2.4e-39 165.2 94 85.1
Medtr4g063925 Medicago truncatula HOM05D003862 ORTHO05D004398 5.3e-39 164.1 94 84.0
PGR119G1270 Punica granatum HOM05D003862 ORTHO05D004398 5.3e-39 164.1 94 85.1
Lj3g0018643 Lotus japonicus HOM05D003862 ORTHO05D004398 1.5e-38 162.5 94 86.2
TWI36G0288 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 1.5e-38 162.5 94 85.1
TWI75G0870 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 2.0e-38 162.2 94 84.0
Cfa016018 Carpinus fangiana HOM05D000273 ORTHO05D004398 3.4e-38 161.4 94 87.2
CANSAT54G2947 Cannabis sativa HOM05D003862 ORTHO05D004398 4.5e-38 161.0 95 85.3
Phvul.011G064100 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 4.5e-38 161.0 94 83.0
Rhsim05G0192800 Rhododendron simsii HOM05D003862 ORTHO05D004398 9.9e-38 159.8 117 72.6
Actinidia05313 Actinidia chinensis HOM05D003862 ORTHO05D004398 2.9e-37 158.3 87 89.7
Prupe.6G255300 Prunus persica HOM05D003862 ORTHO05D004398 3.8e-37 157.9 95 83.2
MD04G1129100 Malus domestica HOM05D003862 ORTHO05D004398 4.9e-37 157.5 95 83.2
RcHm_v2.0_Chr3g0466561 Rosa chinensis HOM05D003862 ORTHO05D004398 4.9e-37 157.5 96 83.3
TWI31G1113 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 6.4e-37 157.1 94 81.9
Sc05g0009640 Simmondsia chinensis HOM05D003862 ORTHO05D004398 1.1e-36 156.4 94 77.7
TPR.G14480 Trifolium pratense HOM05D003862 ORTHO05D004398 1.1e-36 156.4 94 83.0
Peaxi162Scf01517g00013 Petunia axillaris HOM05D003862 ORTHO05D004398 2.4e-36 155.2 92 80.4
MD12G1141800 Malus domestica HOM05D003862 ORTHO05D004398 3.2e-36 154.8 95 82.1
ECA248G1530 Erigeron canadensis HOM05D003862 ORTHO05D004398 4.2e-36 154.5 94 75.5
Duzib168G1372 Durio zibethinus HOM05D003862 ORTHO05D004398 5.4e-36 154.1 94 79.8
Duzib170G0179 Durio zibethinus HOM05D003862 ORTHO05D004398 5.4e-36 154.1 94 79.8
Gohir.D03G125700 Gossypium hirsutum HOM05D003862 ORTHO05D004398 9.3e-36 153.3 94 79.8
Gorai.003G131900 Gossypium raimondii HOM05D003862 ORTHO05D004398 9.3e-36 153.3 94 79.8
Thecc.09G321500 Theobroma cacao HOM05D003862 ORTHO05D004398 9.3e-36 153.3 94 79.8
Manes.02G133100 Manihot esculenta HOM05D003862 ORTHO05D004398 1.2e-35 152.9 93 79.6
Potri.012G039100 Populus trichocarpa HOM05D003862 ORTHO05D004398 1.2e-35 152.9 93 77.4
Sabra12G0027600 Salix brachista HOM05D003862 ORTHO05D004398 1.2e-35 152.9 93 77.4
TPR.G17728 Trifolium pratense HOM05D003862 ORTHO05D004398 1.2e-35 152.9 94 80.9
arahy.Tifrunner.gnm1.ann1.Q4VW5J Arachis hypogaea HOM05D003862 ORTHO05D004398 1.6e-35 152.5 94 77.7
MD03G1093400 Malus domestica HOM05D003862 ORTHO05D004398 2.1e-35 152.1 81 90.1
Duzib150G0578 Durio zibethinus HOM05D003862 ORTHO05D004398 2.7e-35 151.8 94 78.7
Gohir.A03G042066 Gossypium hirsutum HOM05D003862 ORTHO05D004398 2.7e-35 151.8 94 78.7
THA.LOC104799442 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 2.7e-35 151.8 94 78.7
arahy.Tifrunner.gnm1.ann1.PAA8CG Arachis hypogaea HOM05D003862 ORTHO05D004398 3.5e-35 151.4 94 76.6
Manes.01G173900 Manihot esculenta HOM05D003862 ORTHO05D004398 3.5e-35 151.4 93 78.5
Gohir.D13G233100 Gossypium hirsutum HOM05D003862 ORTHO05D004398 4.6e-35 151.0 94 78.7
Gorai.013G263900 Gossypium raimondii HOM05D003862 ORTHO05D004398 4.6e-35 151.0 94 78.7
ATR0559G041 Amborella trichopoda HOM05D003862 ORTHO05D004398 6.0e-35 150.6 81 88.9
Thhalv10002743m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 7.9e-35 150.2 94 77.7
Ciclev10029679m.g Citrus clementina HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 77.7
Sp2g01740 Schrenkiella parvula HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 77.7
THA.LOC104810779 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 77.7
vmacro08654 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 1.0e-34 149.8 150 56.7
AT3G46560 Arabidopsis thaliana HOM05D003862 ORTHO05D004398 1.3e-34 149.4 94 77.7
Cpa.g.sc81.150 Carica papaya HOM05D003862 ORTHO05D004398 1.3e-34 149.4 94 78.7
Thhalv10023780m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 1.8e-34 149.1 94 76.6
Gohir.A13G227500 Gossypium hirsutum HOM05D003862 ORTHO05D004398 1.8e-34 149.1 94 77.7
Hund04959 Selenicereus undatus HOM05D003862 ORTHO05D004398 2.3e-34 148.7 94 73.4
FAN02G2377 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.0e-34 148.3 95 77.9
FAN09G4075 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.0e-34 148.3 95 77.9
Carub.0005s1283 Capsella rubella HOM05D003862 ORTHO05D004398 3.9e-34 147.9 94 76.6
COL.COLO4_18508 Corchorus olitorius HOM05D003862 ORTHO05D004398 3.9e-34 147.9 94 77.7
HanXRQChr01g0009491 Helianthus annuus HOM05D003862 ORTHO05D004398 5.1e-34 147.5 90 76.7
AL5G25420 Arabidopsis lyrata HOM05D003862 ORTHO05D004398 6.7e-34 147.1 94 76.6
Actinidia11257 Actinidia chinensis HOM05D003862 ORTHO05D004398 8.7e-34 146.7 78 94.9
AagrBONN_evm.TU.Sc2ySwM_368.1516 Anthoceros agrestis HOM05D003862 ORTHO05D004398 8.7e-34 146.7 87 78.2
CARHR155240 Cardamine hirsuta HOM05D003862 ORTHO05D004398 1.5e-33 146.0 94 75.5
FvH4_6g13690 Fragaria vesca HOM05D003862 ORTHO05D004398 1.5e-33 146.0 95 76.8
Pp3c24_15930 Physcomitrium patens HOM05D003862 ORTHO05D004398 1.9e-33 145.6 87 80.5
Mapoly0020s0168 Marchantia polymorpha HOM05D003862 ORTHO05D004398 2.5e-33 145.2 87 77.0
Carub.0003s2691 Capsella rubella HOM05D003862 ORTHO05D004398 1.3e-32 142.9 94 73.4
Aa31sc23G440 Aethionema arabicum HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 71.3
BcaC04g22454 Brassica carinata HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
A09p15900 Brassica napus HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
C09p19140 Brassica napus HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
BolC9t54821H Brassica oleracea HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
BraA09t37226Z Brassica rapa HOM05D003862 ORTHO05D004398 2.1e-32 142.1 94 73.4
Phvul.L001624 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 2.8e-32 141.7 93 73.1
BcaC02g10413 Brassica carinata HOM05D003862 ORTHO05D004398 3.7e-32 141.4 94 73.4
C04p29160 Brassica napus HOM05D003862 ORTHO05D004398 3.7e-32 141.4 94 73.4
BolC4t24450H Brassica oleracea HOM05D003862 ORTHO05D004398 3.7e-32 141.4 94 73.4
Aa31LG4G15560 Aethionema arabicum HOM05D003862 ORTHO05D004398 8.1e-32 140.2 94 72.3
Pp3c20_6200 Physcomitrium patens HOM05D003862 ORTHO05D004398 8.1e-32 140.2 87 77.0
Glyma.03G082300 Glycine max HOM05D003862 ORTHO05D004398 1.8e-31 139.0 93 68.8
A03p68180 Brassica napus HOM05D003862 ORTHO05D004398 2.4e-31 138.7 94 72.3
BraA01t02647Z Brassica rapa HOM05D003862 ORTHO05D004398 2.4e-31 138.7 94 72.3
VMungo1127G0240 Vigna mungo HOM05D003862 ORTHO05D004398 2.4e-31 138.7 81 82.7
arahy.Tifrunner.gnm1.ann1.817FQF Arachis hypogaea HOM05D003862 ORTHO05D004398 3.1e-31 138.3 91 72.5
arahy.Tifrunner.gnm1.ann1.JG2TRE Arachis hypogaea HOM05D003862 ORTHO05D004398 3.1e-31 138.3 91 72.5
BcaB07g31364 Brassica carinata HOM05D003862 ORTHO05D004398 3.1e-31 138.3 94 71.3
Lj3g0015625 Lotus japonicus HOM05D003862 ORTHO05D004398 5.3e-31 137.5 93 69.9
arahy.Tifrunner.gnm1.ann1.GD7L84 Arachis hypogaea HOM05D003862 ORTHO05D004398 1.5e-30 136.0 91 71.4
arahy.Tifrunner.gnm1.ann1.L1N949 Arachis hypogaea HOM05D003862 ORTHO05D004398 3.4e-30 134.8 91 70.3
QL07p048307 Quercus lobata HOM05D003862 ORTHO05D004398 4.5e-30 134.4 158 50.0
Aqoxy4G02928 Aquilegia oxysepala HOM05D003862 ORTHO05D004398 7.6e-30 133.7 93 66.7
PGR004G0102 Punica granatum HOM05D003862 ORTHO05D004398 9.9e-30 133.3 92 69.6
TPR.G5603 Trifolium pratense HOM05D003862 ORTHO05D004398 1.1e-28 129.8 93 63.4
CBR_g46834 Chara braunii HOM05D003862 ORTHO05D004398 3.2e-28 128.3 94 66.0
SMO367G0781 Selaginella moellendorffii HOM05D003862 ORTHO05D004398 3.2e-28 128.3 87 69.0
Eucgr.A01265 Eucalyptus grandis HOM05D003862 ORTHO05D004398 4.2e-28 127.9 87 72.4
MBI14_g20103_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 7.1e-28 127.1 94 73.4
Psat7g239120 Pisum sativum HOM05D003862 ORTHO05D004398 3.5e-27 124.8 93 59.1
Dinv37171 Davidia involucrata HOM05D003862 ORTHO05D004398 4.6e-27 124.4 62 95.2
FAN27G3302 Fragaria x ananassa HOM05D003862 ORTHO05D004398 6.0e-27 124.0 95 66.3
Haze_24096 Corylus avellana HOM05D003862 ORTHO05D004398 7.9e-27 123.6 78 76.9
Nn2g14532 Nelumbo nucifera HOM05D003862 ORTHO05D004398 1.0e-26 123.2 69 85.5
Sc20g0004910 Simmondsia chinensis HOM05D003862 ORTHO05D004398 1.8e-26 122.5 63 92.1
QL01p031927 Quercus lobata HOM05D003862 ORTHO05D004398 5.1e-26 120.9 62 90.3
CAN.G326.7 Capsicum annuum HOM05D003862 ORTHO05D004398 1.6e-24 115.9 63 84.1
SalBow2G1777 Salvia bowleyana HOM05D003862 ORTHO05D004398 2.8e-24 115.2 92 62.0
MCO12G250 Micromonas commoda HOM05D003862 ORTHO05D004398 3.7e-24 114.8 79 63.3
Peaxi162Scf00165g00129 Petunia axillaris HOM05D003862 ORTHO05D004398 6.9e-23 110.5 84 67.9
FAN14G4115 Fragaria x ananassa HOM05D003862 ORTHO05D004398 9.0e-23 110.2 95 65.3
unitig_6.g29269 Utricularia gibba HOM05D003862 ORTHO05D004398 1.0e-21 106.7 84 61.9
unitig_747.g21430 Utricularia gibba HOM05D003862 ORTHO05D004398 1.0e-21 106.7 84 61.9
Solyc08g048070.1 Solanum lycopersicum HOM05D003862 ORTHO05D004398 3.2e-20 101.7 67 70.1
Medtr4g021715 Medicago truncatula HOM05D003862 ORTHO05D004398 2.8e-16 88.6 93 48.4
Cre01.g033400 Chlamydomonas reinhardtii HOM05D003862 ORTHO05D004398 6.3e-16 87.4 79 48.1
PRCOL_00005138 Prasinoderma coloniale HOM05D003862 ORTHO05D004398 6.3e-16 87.4 69 55.1
Os05g0111100 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 2.2e-13 79.0 70 54.3
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 3.4e-06 55.1 40 70.0
Medtr4g021670 Medicago truncatula HOM05D000256 ORTHO05D000119 4.5e-06 54.7 62 45.2
SHI25717 Sapria himalayana HOM05D003862 ORTHO05D004398 7.7e-06 53.9 61 45.9


User provided reference genes

Program Settings