Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 5.3e-99 364.4 189 100.0
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 5.3e-99 364.4 189 100.0
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 5.3e-99 364.4 189 100.0
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 3.5e-66 255.4 187 69.0
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 2.1e-63 246.1 187 72.2
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.2e-61 240.4 186 71.0
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.3e-60 236.9 185 70.3
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.7e-60 236.5 185 69.2
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 2.9e-60 235.7 185 70.3
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 3.9e-57 225.3 186 67.2
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 3.3e-56 222.2 193 64.8
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 9.5e-56 220.7 188 65.4
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 3.6e-55 218.8 188 63.8
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 4.7e-55 218.4 186 66.1
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.5e-53 213.4 181 65.2
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 5.8e-53 211.5 182 64.3
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 6.4e-52 208.0 188 62.8
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 4.1e-51 205.3 188 61.7
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 6.0e-50 201.4 186 60.2
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 7.8e-50 201.1 187 64.2
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 3.0e-49 199.1 186 62.4
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 3.9e-49 198.7 190 58.9
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 6.6e-49 198.0 189 59.8
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 1.9e-48 196.4 181 61.3
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 2.5e-48 196.1 188 58.0
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 4.3e-48 195.3 180 64.4
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 5.6e-48 194.9 185 61.1
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 9.5e-48 194.1 180 63.9
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.2e-47 193.7 185 58.4
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.2e-47 193.7 189 63.5
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 2.8e-47 192.6 187 60.4
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 6.2e-47 191.4 188 58.0
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 1.4e-46 190.3 180 57.8
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 3.1e-46 189.1 186 59.1
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 8.9e-46 187.6 181 55.8
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 8.9e-46 187.6 190 58.9
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 2.0e-45 186.4 188 59.6
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 2.6e-45 186.0 185 60.0
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 3.4e-45 185.7 181 60.8
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 4.4e-45 185.3 188 59.0
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 1.7e-44 183.3 188 58.0
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 2.2e-44 183.0 188 60.6
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 2.9e-44 182.6 188 60.1
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 2.9e-44 182.6 188 56.9
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.4e-44 181.4 181 59.7
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 8.4e-44 181.0 188 56.9
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 8.4e-44 181.0 187 56.7
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 1.4e-43 180.3 189 56.1
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 3.2e-43 179.1 186 58.1
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 4.2e-43 178.7 188 58.0
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 5.4e-43 178.3 187 52.9
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 7.1e-43 177.9 188 58.0
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 7.1e-43 177.9 187 56.1
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.2e-42 177.2 178 61.2
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.2e-42 177.2 180 57.2
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 2.1e-42 176.4 181 56.4
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 2.1e-42 176.4 186 55.4
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 2.7e-42 176.0 189 57.1
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 2.7e-42 176.0 186 55.4
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 4.6e-42 175.3 167 58.1
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 6.0e-42 174.9 180 56.7
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 7.8e-42 174.5 187 55.6
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 7.8e-42 174.5 181 54.1
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 2.3e-41 172.9 193 56.0
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.3e-41 172.9 188 56.9
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 2.3e-41 172.9 185 54.1
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 3.9e-41 172.2 181 56.4
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 1.5e-40 170.2 189 55.0
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 2.5e-40 169.5 186 55.4
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 2.5e-40 169.5 186 55.9
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.5e-40 169.5 199 54.3
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 2.5e-40 169.5 187 54.0
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 3.3e-40 169.1 180 56.1
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 5.6e-40 168.3 186 55.4
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 7.3e-40 167.9 185 56.8
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.2e-39 167.2 186 55.9
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.8e-39 166.0 195 54.9
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 1.1e-38 164.1 176 54.0
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.8e-38 163.3 182 55.5
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.0e-37 159.8 206 52.4
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.6e-37 159.5 182 54.9
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 4.4e-37 158.7 123 74.0
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.8e-36 155.6 173 59.0
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 8.4e-36 154.5 173 58.4
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 3.2e-35 152.5 196 53.1
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.1e-34 149.8 173 57.2
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 3.5e-34 149.1 188 51.6
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 7.8e-34 147.9 181 49.2
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 1.0e-33 147.5 187 52.4
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 1.7e-33 146.7 181 47.0
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 5.1e-33 145.2 181 51.4
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 8.7e-33 144.4 187 50.3
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 2.8e-31 139.4 195 48.7
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 4.8e-31 138.7 187 48.1
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 2.4e-30 136.3 182 45.6
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.4e-30 136.3 189 50.3
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 3.1e-30 136.0 192 48.4
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 3.1e-30 136.0 187 48.7
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 5.3e-30 135.2 187 48.7
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 1.5e-29 133.7 197 45.7
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 4.5e-29 132.1 190 46.8
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 7.6e-29 131.3 188 48.4
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 4.9e-28 128.6 186 47.3
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 4.9e-28 128.6 186 47.3
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 4.9e-28 128.6 186 47.3
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 1.9e-27 126.7 138 54.3
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 4.2e-27 125.6 99 71.7
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-26 124.0 186 46.2
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 1.6e-26 123.6 188 46.3
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 4.6e-26 122.1 189 46.0
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 4.6e-26 122.1 186 46.2
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 6.0e-26 121.7 173 47.4
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 1.0e-25 120.9 177 46.9
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 5.1e-25 118.6 150 48.7
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 6.7e-25 118.2 187 44.4
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.5e-24 117.1 224 39.7
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 4.0e-22 109.0 165 44.2
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 2.0e-21 106.7 136 47.8
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 3.4e-21 105.9 165 43.6
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 3.8e-20 102.4 75 70.7
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 4.6e-18 95.5 163 45.4
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.8e-17 93.6 176 42.0
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 3.9e-17 92.4 176 41.5
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 8.7e-17 91.3 82 63.4
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 1.9e-16 90.1 153 43.8
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 2.8e-15 86.3 134 41.8
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 4.8e-15 85.5 70 67.1
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.4e-14 83.2 176 39.8
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 1.2e-13 80.9 191 37.7
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-13 80.9 141 42.6
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 2.0e-13 80.1 169 38.5
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 3.4e-13 79.3 172 39.5
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.5e-13 79.0 178 38.2
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 1.7e-12 77.0 181 38.1
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 2.2e-12 76.6 165 38.2
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 4.2e-11 72.4 76 53.9
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 6.1e-10 68.6 64 62.5
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 1.0e-09 67.8 193 30.6
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 2.3e-09 66.6 141 37.6
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 3.9e-09 65.9 88 51.1
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 5.7e-08 62.0 228 31.6
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 3.7e-07 59.3 216 32.4
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 8.2e-07 58.2 71 49.3


User provided reference genes

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