Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 0.0e+00 1217.6 848 100.0
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 0.0e+00 1217.6 848 100.0
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 0.0e+00 1125.9 853 95.1
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 1.6e-235 820.1 881 75.7
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 5.4e-191 672.2 860 68.0
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 3.5e-190 669.5 893 68.6
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 3.9e-149 533.1 877 62.6
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 2.4e-138 497.3 812 59.4
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 9.0e-138 495.4 974 56.0
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 4.5e-137 493.0 913 55.3
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 1.7e-136 491.1 919 54.7
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 7.9e-134 482.3 930 52.8
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 1.3e-131 474.9 810 62.0
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 6.2e-131 472.6 933 53.8
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 3.5e-126 456.8 914 56.2
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.0e-126 456.1 902 57.8
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 1.3e-123 448.4 904 55.2
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 3.1e-122 443.7 919 52.4
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 1.8e-117 427.9 967 51.0
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 2.2e-115 421.0 803 54.8
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.2e-110 405.2 901 52.1
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 2.1e-110 404.4 928 52.2
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.4e-109 401.7 858 53.6
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 8.8e-109 399.1 859 50.8
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 4.4e-108 396.7 878 56.7
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.4e-105 387.1 891 51.4
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 5.9e-105 386.3 829 51.3
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 1.0e-104 385.6 909 52.9
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.1e-102 377.9 833 52.9
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 2.3e-101 374.4 914 52.4
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 5.2e-101 373.2 987 51.0
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 1.1e-100 372.1 905 54.1
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 9.7e-100 369.0 911 48.6
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 2.6e-97 360.9 880 54.0
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 2.6e-97 360.9 895 52.8
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 1.7e-96 358.2 933 50.7
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 2.9e-96 357.5 919 54.4
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 6.1e-94 349.7 909 50.7
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.2e-91 341.3 897 51.4
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 8.2e-91 339.3 899 46.5
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.2e-89 335.5 923 41.1
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.0e-89 334.7 901 50.2
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 5.9e-89 333.2 899 50.7
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 1.0e-88 332.4 932 48.2
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 1.3e-88 332.0 931 48.1
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.2e-88 331.3 896 51.9
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 2.9e-88 330.9 925 50.9
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 5.5e-87 326.6 934 48.1
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 1.2e-86 325.5 879 47.8
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 1.2e-86 325.5 930 47.7
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 6.1e-86 323.2 902 51.3
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 6.1e-86 323.2 892 50.8
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 8.0e-86 322.8 947 50.8
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 1.0e-85 322.4 909 51.5
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 4.0e-85 320.5 775 53.3
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 4.4e-84 317.0 892 51.6
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 4.1e-82 310.5 749 41.9
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 9.1e-82 309.3 212 77.8
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 2.3e-80 304.7 912 50.7
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 1.2e-78 298.9 248 66.9
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 2.3e-77 294.7 898 50.4
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 5.2e-77 293.5 907 49.3
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 1.5e-76 292.0 885 46.3
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 2.6e-76 291.2 282 63.1
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 3.4e-76 290.8 263 65.8
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 1.3e-75 288.9 877 46.8
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.8e-75 287.7 310 59.4
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 1.4e-74 285.4 852 54.2
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 1.4e-74 285.4 319 60.8
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 1.4e-74 285.4 302 60.3
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 4.5e-73 280.4 209 72.7
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 1.7e-72 278.5 878 44.5
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.9e-71 275.0 214 71.0
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 7.3e-71 273.1 321 56.7
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 9.5e-71 272.7 951 48.5
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 6.1e-70 270.0 924 43.6
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 8.0e-70 269.6 287 59.9
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 1.8e-69 268.5 249 63.1
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 6.8e-69 266.5 246 63.8
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 6.8e-69 266.5 255 63.9
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 6.8e-69 266.5 928 46.9
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 1.2e-68 265.8 280 57.9
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.5e-68 265.4 290 59.3
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 1.3e-67 262.3 900 44.3
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 2.2e-67 261.5 252 61.5
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.1e-66 259.2 956 43.6
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 5.4e-66 256.9 910 50.3
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 7.0e-66 256.5 293 55.3
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 2.3e-64 251.5 163 80.4
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 6.6e-64 250.0 263 58.2
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 1.2e-62 245.7 215 66.5
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 3.6e-62 244.2 298 54.4
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 8.0e-62 243.0 215 62.8
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 4.4e-60 237.3 289 53.6
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 7.5e-60 236.5 140 84.3
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 9.8e-60 236.1 283 54.1
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 3.7e-59 234.2 309 53.1
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 6.4e-59 233.4 310 53.2
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 1.1e-58 232.6 142 81.7
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 2.4e-58 231.5 836 46.8
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.2e-57 229.2 135 86.7
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 6.0e-57 226.9 208 62.0
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 2.3e-56 224.9 312 52.9
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 3.0e-56 224.6 313 52.7
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 8.6e-56 223.0 906 45.6
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 5.6e-55 220.3 263 52.1
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 5.6e-55 220.3 263 52.1
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 9.5e-55 219.5 220 60.9
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 9.5e-55 219.5 310 48.7
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 6.8e-53 213.4 251 57.0
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 9.9e-52 209.5 173 65.9
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 1.7e-51 208.8 131 77.9
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 6.4e-51 206.8 226 54.0
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 7.8e-49 199.9 134 76.1
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 6.6e-48 196.8 168 64.9
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 2.2e-43 181.8 310 44.8
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 3.2e-42 177.9 194 54.6
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 8.4e-35 153.3 140 60.7
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 1.6e-33 149.1 381 44.4
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 1.7e-32 145.6 134 61.9
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 8.7e-32 143.3 182 48.4
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 1.3e-30 139.4 127 59.8
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 3.1e-29 134.8 411 40.6
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.9e-23 115.5 150 47.3
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 4.8e-22 110.9 147 45.6
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.3e-19 102.8 86 68.6
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 2.2e-19 102.1 91 67.0
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 3.1e-13 81.6 57 71.9
SalBow6G2010 Salvia bowleyana HOM05D005166 ORTHO05D006120 1.5e-12 79.3 412 36.9
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 1.6e-09 69.3 121 37.2
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 2.1e-09 68.9 50 70.0


User provided reference genes

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