Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 5.0e-111 404.4 204 100.0
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 5.4e-105 384.4 204 96.6
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 9.9e-83 310.5 201 79.6
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 6.4e-82 307.8 202 80.7
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 1.7e-79 299.7 194 79.9
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 5.6e-78 294.7 204 75.5
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 5.2e-76 288.1 198 73.7
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 6.8e-76 287.7 204 71.6
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 1.5e-75 286.6 195 73.3
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 2.2e-74 282.7 189 77.2
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 3.8e-74 282.0 193 74.1
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 3.8e-74 282.0 195 76.4
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 6.4e-74 281.2 196 73.0
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 3.2e-73 278.9 195 71.3
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 5.4e-73 278.1 193 73.6
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 1.2e-72 276.9 193 73.6
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 1.2e-72 276.9 192 74.5
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 2.1e-72 276.2 195 70.8
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 3.5e-72 275.4 190 72.1
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 3.5e-72 275.4 206 69.9
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 4.6e-72 275.0 195 70.3
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 6.0e-72 274.6 187 73.3
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 6.0e-72 274.6 192 71.4
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 1.7e-71 273.1 193 72.0
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 3.0e-71 272.3 192 72.4
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 3.0e-71 272.3 195 69.7
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 3.9e-71 271.9 192 70.8
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 5.1e-71 271.6 204 69.6
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 1.6e-69 266.5 198 69.7
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 1.6e-69 266.5 198 67.2
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 1.6e-69 266.5 163 76.7
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 2.8e-69 265.8 199 68.8
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 4.8e-69 265.0 199 68.3
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 8.1e-69 264.2 200 67.0
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 8.1e-69 264.2 195 70.8
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 1.8e-68 263.1 194 69.6
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 2.4e-68 262.7 187 72.2
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 3.1e-68 262.3 194 68.0
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 6.9e-68 261.2 194 67.0
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 1.5e-67 260.0 195 67.2
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 1.5e-67 260.0 184 70.7
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 7.6e-67 257.7 191 68.6
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 3.8e-66 255.4 202 66.3
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 6.4e-66 254.6 208 65.4
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 8.4e-66 254.2 195 66.2
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 1.1e-65 253.8 194 67.0
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 1.2e-64 250.4 164 74.4
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 1.2e-64 250.4 148 81.1
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 1.2e-64 250.4 201 66.7
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 1.2e-64 250.4 194 67.0
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 1.6e-64 250.0 195 64.6
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 3.5e-64 248.8 194 64.4
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 3.5e-64 248.8 167 72.5
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 6.0e-64 248.1 195 64.1
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 7.9e-64 247.7 193 68.4
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 3.9e-63 245.4 196 65.8
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.1e-62 243.8 195 67.7
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 1.1e-62 243.8 181 69.6
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 1.5e-62 243.4 194 66.5
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 1.9e-62 243.0 196 65.3
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.3e-61 240.4 189 63.0
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 6.2e-61 238.0 185 65.4
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 1.1e-60 237.3 297 48.8
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 3.1e-60 235.7 178 64.6
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 3.1e-60 235.7 168 64.9
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 6.9e-60 234.6 200 63.5
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 2.6e-59 232.6 193 61.7
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 3.4e-59 232.3 168 66.1
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 4.5e-59 231.9 198 61.1
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 1.3e-58 230.3 188 63.3
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 2.9e-58 229.2 161 70.8
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 3.2e-57 225.7 192 62.5
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 7.1e-57 224.6 196 61.7
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 1.2e-56 223.8 181 60.8
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 1.2e-56 223.8 172 64.5
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 1.3e-55 220.3 193 61.1
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 1.5e-54 216.9 174 63.2
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 2.5e-54 216.1 182 59.9
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 2.5e-54 216.1 174 62.6
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 3.3e-54 215.7 180 61.1
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 5.6e-54 214.9 185 60.5
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 1.3e-53 213.8 186 60.8
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 4.8e-53 211.8 193 59.1
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 6.2e-53 211.5 197 58.9
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 6.2e-53 211.5 197 58.9
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 6.2e-53 211.5 197 58.9
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 6.2e-53 211.5 170 64.7
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 2.4e-52 209.5 174 60.3
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 4.0e-52 208.8 156 63.5
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.0e-52 208.8 156 63.5
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 9.0e-52 207.6 207 56.5
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 2.0e-51 206.5 207 57.0
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 3.4e-51 205.7 193 56.0
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.9e-49 199.9 142 66.2
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 4.2e-49 198.7 189 53.4
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 1.3e-45 187.2 134 70.1
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 4.8e-45 185.3 134 71.6
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 6.3e-45 184.9 162 51.9
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 3.2e-41 172.6 108 79.6
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 1.3e-39 167.2 180 48.9
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 7.4e-38 161.4 118 59.3
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 1.6e-37 160.2 140 53.6
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 9.0e-36 154.5 92 79.3
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 1.2e-35 154.1 112 64.3
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.1e-33 147.5 109 65.1
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.6e-32 143.7 143 53.8
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 6.5e-26 121.7 161 42.9
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 3.2e-25 119.4 106 52.8
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 7.4e-22 108.2 80 65.0
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 5.0e-18 95.5 152 41.4
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 5.5e-17 92.0 157 37.6
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 3.3e-14 82.8 128 36.7
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 2.2e-10 70.1 52 53.8
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 2.9e-10 69.7 71 56.3
Ah.02g120930 Amaranthus hybridus HOM05D055707 ORTHO05D008441 8.8e-07 58.2 62 50.0
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 1.2e-06 57.8 120 25.8


User provided reference genes

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