Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 2.3e-193 678.7 344 100.0
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.2e-157 560.1 340 82.9
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 5.6e-155 551.2 340 80.9
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 3.1e-153 545.4 348 78.2
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.1e-150 537.0 340 81.5
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 2.3e-148 529.3 340 78.8
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 8.7e-148 527.3 357 76.8
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 4.3e-147 525.0 340 76.5
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 7.3e-147 524.2 340 77.6
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 4.0e-145 518.5 347 77.5
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 8.4e-143 510.8 352 74.4
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 2.1e-141 506.1 340 75.6
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 4.6e-141 505.0 340 72.4
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 1.3e-140 503.4 340 76.2
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 1.7e-140 503.1 340 74.4
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 6.2e-138 494.6 340 74.1
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.1e-137 493.8 341 72.4
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 2.4e-137 492.7 341 73.9
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 1.2e-136 490.3 340 73.8
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 2.6e-136 489.2 340 72.9
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 4.5e-136 488.4 342 73.4
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 4.5e-136 488.4 340 73.5
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 5.8e-136 488.0 340 71.2
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 1.3e-135 486.9 340 71.5
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 2.9e-135 485.7 340 73.8
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 2.9e-135 485.7 340 72.1
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 3.8e-135 485.3 340 72.9
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 1.4e-134 483.4 340 72.4
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 5.4e-134 481.5 340 72.1
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 7.1e-134 481.1 340 72.4
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 7.1e-134 481.1 340 72.9
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 9.3e-134 480.7 340 72.4
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 1.6e-133 479.9 340 70.9
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 6.0e-133 478.0 340 72.6
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 7.9e-133 477.6 352 69.3
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 1.0e-132 477.2 340 71.8
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 3.0e-132 475.7 313 78.6
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 6.7e-132 474.6 346 70.5
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 1.5e-131 473.4 342 72.2
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 1.9e-131 473.0 340 70.9
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 2.5e-131 472.6 340 70.3
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 3.3e-131 472.2 346 70.8
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 4.8e-130 468.4 340 70.3
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 6.2e-130 468.0 341 71.3
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 1.4e-129 466.8 340 71.5
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 5.3e-129 464.9 348 70.7
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 1.5e-128 463.4 340 70.0
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 5.8e-128 461.5 339 70.8
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 7.6e-128 461.1 355 67.6
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 1.3e-127 460.3 341 71.6
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 4.9e-127 458.4 342 69.6
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 1.4e-126 456.8 340 67.4
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 2.5e-126 456.1 340 69.1
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 3.2e-126 455.7 342 69.3
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 9.3e-126 454.1 340 68.5
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 1.6e-125 453.4 340 67.6
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 2.5e-123 446.0 346 66.8
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 3.3e-123 445.7 361 65.1
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 4.3e-123 445.3 340 66.2
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 1.3e-122 443.7 342 67.5
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 2.1e-122 443.0 366 64.2
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 2.1e-122 443.0 340 66.8
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 4.8e-122 441.8 342 67.0
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 1.1e-121 440.7 340 65.6
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 1.1e-121 440.7 340 65.6
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 5.3e-121 438.3 362 65.7
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 6.9e-121 438.0 340 69.4
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 7.6e-120 434.5 341 67.4
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 7.6e-120 434.5 354 63.3
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 2.5e-118 429.5 401 61.6
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 3.2e-118 429.1 340 65.9
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 1.6e-117 426.8 340 65.3
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 1.1e-115 420.6 334 66.2
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 3.3e-115 419.1 331 68.9
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 2.2e-114 416.4 307 68.1
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 1.1e-113 414.1 340 62.6
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 3.4e-112 409.1 340 64.4
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 4.5e-112 408.7 340 64.1
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.9e-110 403.3 364 61.0
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 7.2e-110 401.4 341 59.8
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 1.2e-109 400.6 305 67.2
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 6.7e-108 394.8 353 60.1
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 9.7e-107 391.0 341 61.9
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 4.5e-104 382.1 238 83.2
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 2.1e-101 373.2 352 54.8
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 1.4e-100 370.5 238 80.3
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 2.6e-96 356.3 238 76.9
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 2.2e-95 353.2 238 74.8
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 8.5e-95 351.3 238 75.6
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 2.5e-94 349.7 340 58.2
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 9.4e-94 347.8 340 55.6
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 9.4e-94 347.8 238 73.9
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 1.2e-93 347.4 238 74.8
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 3.6e-93 345.9 238 74.8
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 1.2e-88 330.9 292 63.7
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 9.4e-86 321.2 341 49.3
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 1.8e-84 317.0 341 50.4
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 6.8e-84 315.1 303 53.5
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 6.8e-84 315.1 310 56.5
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 2.0e-83 313.5 340 53.2
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 5.0e-79 298.9 342 51.5
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 1.1e-78 297.7 238 64.3
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 2.5e-78 296.6 338 53.6
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 1.9e-62 243.8 308 44.2
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 5.8e-51 205.7 343 41.4
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 1.7e-50 204.1 239 49.4
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 2.5e-46 190.3 353 35.4
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 1.2e-43 181.4 105 85.7
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 1.3e-39 167.9 127 68.5
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 4.0e-36 156.4 103 70.9
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 3.4e-35 153.3 334 32.0
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 1.7e-34 151.0 104 70.2
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 9.3e-33 145.2 277 36.1
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 2.1e-32 144.1 106 66.0
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 1.9e-30 137.5 90 76.7
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 2.0e-27 127.5 104 63.5
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 2.9e-26 123.6 89 66.3
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 6.4e-26 122.5 186 43.5
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 1.8e-20 104.4 76 72.4
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 7.1e-17 92.4 85 58.8
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 1.4e-12 78.2 70 61.4
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 3.4e-11 73.6 63 54.0
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 7.6e-11 72.4 109 41.3
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 7.6e-11 72.4 109 40.4
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.3e-10 71.6 109 40.4
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 1.7e-10 71.2 148 36.5
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 2.2e-10 70.9 109 40.4
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 2.2e-10 70.9 109 40.4
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 1.1e-09 68.6 149 35.6
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 1.1e-09 68.6 99 38.4
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 1.1e-09 68.6 127 36.2
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 4.2e-09 66.6 167 34.1
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 3.5e-08 63.5 109 40.4
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 3.5e-08 63.5 109 40.4
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 3.5e-08 63.5 109 39.4
Eucgr.D01807 Eucalyptus grandis HOM05D001916 ORTHO05D003272 6.0e-08 62.8 102 39.2
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 1.0e-07 62.0 109 39.4
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 1.0e-07 62.0 109 39.4
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 1.0e-07 62.0 109 39.4
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 1.0e-07 62.0 109 39.4
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 1.8e-07 61.2 121 36.4
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 3.0e-07 60.5 148 30.4
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 3.0e-07 60.5 164 32.3
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 3.9e-07 60.1 168 31.0
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 3.9e-07 60.1 168 31.0
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 5.1e-07 59.7 134 37.3
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 6.7e-07 59.3 113 35.4
PGSC0003DMG400028904 Solanum tuberosum HOM05D001916 ORTHO05D003272 8.7e-07 58.9 139 32.4
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 8.7e-07 58.9 147 32.7
Cpa.g.sc617.3 Carica papaya HOM05D001789 ORTHO05D001755 1.1e-06 58.5 123 35.8
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 1.1e-06 58.5 155 32.3
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.1e-06 58.5 184 28.8
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 1.1e-06 58.5 152 32.9
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 1.1e-06 58.5 126 34.1
THA.LOC104814751 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 1.1e-06 58.5 124 34.7
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 1.9e-06 57.8 134 35.8
MBI06_g33537_MAGBIO Magnolia biondii HOM05D001916 ORTHO05D003272 1.9e-06 57.8 120 33.3
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.9e-06 57.8 133 33.1
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 1.9e-06 57.8 133 32.3
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 2.5e-06 57.4 156 31.4
PGR004G2173 Punica granatum HOM05D006451 ORTHO05D007680 2.5e-06 57.4 117 36.8
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 3.3e-06 57.0 108 35.2
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 3.3e-06 57.0 108 35.2
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 3.3e-06 57.0 109 34.9
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 3.3e-06 57.0 140 31.4
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 4.3e-06 56.6 169 29.6
Oeu032120.1 Olea europaea HOM05D000115 ORTHO05D005317 4.3e-06 56.6 119 37.0
unitig_0.g2466 Utricularia gibba HOM05D001916 ORTHO05D003272 4.3e-06 56.6 145 31.7
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 5.7e-06 56.2 126 34.9
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 5.7e-06 56.2 113 35.4
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 7.4e-06 55.8 138 34.1
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 7.4e-06 55.8 187 28.3
Ca_07499_v3 Cicer arietinum L. HOM05D000371 ORTHO05D001484 7.4e-06 55.8 133 34.6
Cc02_g02210 Coffea canephora HOM05D001916 ORTHO05D003272 7.4e-06 55.8 107 33.6
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 7.4e-06 55.8 109 35.8
Medtr2g078020 Medicago truncatula HOM05D000868 ORTHO05D000711 7.4e-06 55.8 113 37.2
SEGI_21200 Sequoiadendron giganteum HOM05D001789 ORTHO05D001755 7.4e-06 55.8 132 32.6
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 9.6e-06 55.5 113 35.4
Eucgr.A02714 Eucalyptus grandis HOM05D001916 ORTHO05D003272 9.6e-06 55.5 107 35.5
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 9.6e-06 55.5 143 35.7
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 9.6e-06 55.5 176 32.4
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 9.6e-06 55.5 113 33.6
PRCOL_00003648 Prasinoderma coloniale HOM05D001340 ORTHO05D005342 9.6e-06 55.5 163 30.1
QL09p012344 Quercus lobata HOM05D001916 ORTHO05D003272 9.6e-06 55.5 108 32.4
PGSC0003DMG400020884 Solanum tuberosum HOM05D001916 ORTHO05D003272 9.6e-06 55.5 107 35.5


User provided reference genes

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