Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43038 Davidia involucrata HOM05D002769 ORTHO05D003160 2.1e-45 185.3 88 100.0
CSS0005557 Camellia sinensis var. sinensis HOM05D002769 ORTHO05D003160 1.9e-30 135.6 77 84.4
Actinidia37569 Actinidia chinensis HOM05D002769 ORTHO05D003160 9.3e-30 133.3 81 81.5
Lj1C80T5 Lonicera japonica HOM05D002769 ORTHO05D003160 3.5e-29 131.3 81 76.5
Lj2C1137G13 Lonicera japonica HOM05D002769 ORTHO05D003160 6.0e-29 130.6 78 79.5
Hma1.2p1_0825F.1_g224750 Hydrangea macrophylla HOM05D002769 ORTHO05D003160 8.7e-28 126.7 78 76.9
Hma1.2p1_1224F.1_g268500 Hydrangea macrophylla HOM05D002769 ORTHO05D003160 8.7e-28 126.7 78 76.9
Dinv19246 Davidia involucrata HOM05D002769 ORTHO05D003160 1.1e-27 126.3 78 82.1
PGSC0003DMG400020083 Solanum tuberosum HOM05D002769 ORTHO05D003160 1.9e-27 125.6 76 78.9
Rhsim13G0041700 Rhododendron simsii HOM05D002769 ORTHO05D003160 2.5e-27 125.2 84 75.0
Actinidia30106 Actinidia chinensis HOM05D002769 ORTHO05D003160 5.6e-27 124.0 78 79.5
MD05G1183600 Malus domestica HOM05D002769 ORTHO05D003160 7.4e-27 123.6 85 75.3
Solyc06g083660.4 Solanum lycopersicum HOM05D002769 ORTHO05D003160 7.4e-27 123.6 76 77.6
Hma1.2p1_1393F.1_g280250 Hydrangea macrophylla HOM05D002769 ORTHO05D003160 1.6e-26 122.5 75 80.0
Actinidia23736 Actinidia chinensis HOM05D002769 ORTHO05D003160 2.8e-26 121.7 80 73.8
DCAR_018538 Daucus carota HOM05D002769 ORTHO05D003160 3.7e-26 121.3 78 71.8
Sopen06g035050 Solanum pennellii HOM05D002769 ORTHO05D003160 6.2e-26 120.6 76 76.3
Nitab4.5_0001557g0040 Nicotiana tabacum HOM05D002769 ORTHO05D003160 1.8e-25 119.0 79 72.2
GSVIVG01028483001 Vitis vinifera HOM05D002769 ORTHO05D003160 2.4e-25 118.6 79 72.2
Sabra02G0192800 Salix brachista HOM05D002769 ORTHO05D003160 4.0e-25 117.9 83 69.9
Thecc.01G245100 Theobroma cacao HOM05D002769 ORTHO05D003160 6.9e-25 117.1 80 76.2
Haze_24739 Corylus avellana HOM05D002769 ORTHO05D003160 9.0e-25 116.7 81 72.8
Potri.002G253600 Populus trichocarpa HOM05D002769 ORTHO05D003160 1.2e-24 116.3 80 72.5
Peaxi162Scf00517g00316 Petunia axillaris HOM05D002769 ORTHO05D003160 1.5e-24 115.9 76 73.7
FAN24G0991 Fragaria x ananassa HOM05D002769 ORTHO05D003160 2.6e-24 115.2 83 71.1
Cfa002513 Carpinus fangiana HOM05D002769 ORTHO05D003160 5.8e-24 114.0 80 71.2
Actinidia09495 Actinidia chinensis HOM05D002769 ORTHO05D003160 7.6e-24 113.6 78 70.5
Duzib133G1342 Durio zibethinus HOM05D002769 ORTHO05D003160 7.6e-24 113.6 78 75.6
FAN15G3258 Fragaria x ananassa HOM05D002769 ORTHO05D003160 2.2e-23 112.1 81 71.6
VMungo1383G1619 Vigna mungo HOM05D002769 ORTHO05D003160 2.2e-23 112.1 82 70.7
Prupe.8G209800 Prunus persica HOM05D002769 ORTHO05D003160 2.9e-23 111.7 81 70.4
vmacro02723 Vaccinium macrocarpon HOM05D002769 ORTHO05D003160 3.8e-23 111.3 80 71.2
FvH4_2g19940 Fragaria vesca HOM05D002769 ORTHO05D003160 6.5e-23 110.5 80 71.2
Lj1g0022994 Lotus japonicus HOM05D002769 ORTHO05D003160 6.5e-23 110.5 80 72.5
FAN14G0266 Fragaria x ananassa HOM05D002769 ORTHO05D003160 1.1e-22 109.8 80 71.2
CiPaw.03G273400 Carya illinoinensis HOM05D002769 ORTHO05D003160 1.9e-22 109.0 80 68.8
Gohir.D08G210600 Gossypium hirsutum HOM05D002769 ORTHO05D003160 2.5e-22 108.6 88 68.2
Gorai.004G223300 Gossypium raimondii HOM05D002769 ORTHO05D003160 2.5e-22 108.6 88 68.2
Sc05g0002490 Simmondsia chinensis HOM05D002769 ORTHO05D003160 2.5e-22 108.6 80 65.0
Phvul.001G168100 Phaseolus vulgaris HOM05D002769 ORTHO05D003160 3.2e-22 108.2 80 70.0
Gorai.001G235600 Gossypium raimondii HOM05D002769 ORTHO05D003160 4.2e-22 107.8 83 69.9
Manes.12G040100 Manihot esculenta HOM05D002769 ORTHO05D003160 4.2e-22 107.8 80 68.8
Glyma.03G169700 Glycine max HOM05D002769 ORTHO05D003160 7.1e-22 107.1 80 70.0
Nitab4.5_0002330g0010 Nicotiana tabacum HOM05D002769 ORTHO05D003160 9.3e-22 106.7 70 72.9
QL09p043841 Quercus lobata HOM05D002769 ORTHO05D003160 9.3e-22 106.7 79 69.6
TAR636G3291 Trochodendron aralioides HOM05D002769 ORTHO05D003160 9.3e-22 106.7 79 67.1
FAN27G3465 Fragaria x ananassa HOM05D002769 ORTHO05D003160 1.6e-21 105.9 77 71.4
Glyma.19G170900 Glycine max HOM05D002769 ORTHO05D003160 1.6e-21 105.9 80 70.0
Gohir.A08G192600 Gossypium hirsutum HOM05D002769 ORTHO05D003160 2.1e-21 105.5 88 67.0
Peaxi162Scf00052g02120 Petunia axillaris HOM05D002769 ORTHO05D003160 2.7e-21 105.1 77 64.9
RcHm_v2.0_Chr6g0285601 Rosa chinensis HOM05D002769 ORTHO05D003160 2.7e-21 105.1 80 70.0
TWI59G1133 Tripterygium wilfordii HOM05D002769 ORTHO05D003160 3.5e-21 104.8 80 67.5
arahy.Tifrunner.gnm1.ann1.CSY4UT Arachis hypogaea HOM05D002769 ORTHO05D003160 4.6e-21 104.4 80 65.0
arahy.Tifrunner.gnm1.ann1.IL7968 Arachis hypogaea HOM05D002769 ORTHO05D003160 4.6e-21 104.4 80 65.0
MSTRG.18369 Avicennia marina HOM05D002769 ORTHO05D003160 4.6e-21 104.4 81 64.2
PGSC0003DMG400018957 Solanum tuberosum HOM05D002769 ORTHO05D003160 4.6e-21 104.4 78 64.1
Nitab4.5_0014701g0010 Nicotiana tabacum HOM05D002769 ORTHO05D003160 6.1e-21 104.0 73 65.8
Ah.08g213810 Amaranthus hybridus HOM05D002769 ORTHO05D003160 7.9e-21 103.6 83 67.5
Migut.N02243 Erythranthe guttata HOM05D002769 ORTHO05D003160 7.9e-21 103.6 78 66.7
Gohir.A07G202500 Gossypium hirsutum HOM05D002769 ORTHO05D003160 7.9e-21 103.6 83 67.5
SalBow6G0913 Salvia bowleyana HOM05D002769 ORTHO05D003160 7.9e-21 103.6 79 64.6
AUR62025393 Chenopodium quinoa HOM05D002769 ORTHO05D003160 1.0e-20 103.2 80 67.5
Atru.chr5.1923 Acer truncatum HOM05D002769 ORTHO05D003160 2.3e-20 102.1 83 63.9
Ciclev10018694m.g Citrus clementina HOM05D002769 ORTHO05D003160 2.3e-20 102.1 82 65.9
Manes.13G042600 Manihot esculenta HOM05D002769 ORTHO05D003160 3.0e-20 101.7 78 65.4
Aa31LG2G21610 Aethionema arabicum HOM05D002769 ORTHO05D003160 5.1e-20 100.9 83 62.7
CiPaw.04G192400 Carya illinoinensis HOM05D002769 ORTHO05D003160 8.7e-20 100.1 80 65.0
MSTRG.17533 Avicennia marina HOM05D002769 ORTHO05D003160 1.1e-19 99.8 78 65.4
EL10Ac7g17756 Beta vulgaris HOM05D002769 ORTHO05D003160 1.1e-19 99.8 81 66.7
CANSAT01G1291 Cannabis sativa HOM05D002769 ORTHO05D003160 1.1e-19 99.8 67 73.1
THA.LOC104814547 Tarenaya hassleriana HOM05D002769 ORTHO05D003160 1.5e-19 99.4 80 63.8
ECA247G3589 Erigeron canadensis HOM05D002769 ORTHO05D003160 1.9e-19 99.0 78 62.8
Nitab4.5_0023523g0010 Nicotiana tabacum HOM05D002769 ORTHO05D003160 3.3e-19 98.2 81 60.5
DCAR_004699 Daucus carota HOM05D002769 ORTHO05D003160 4.3e-19 97.8 77 62.3
Migut.D00499 Erythranthe guttata HOM05D002769 ORTHO05D003160 4.3e-19 97.8 81 61.7
Oeu052102.1 Olea europaea HOM05D002769 ORTHO05D003160 4.3e-19 97.8 79 64.6
AUR62008853 Chenopodium quinoa HOM05D002769 ORTHO05D003160 5.7e-19 97.4 79 64.6
Oeu052101.1 Olea europaea HOM05D002769 ORTHO05D003160 5.7e-19 97.4 79 64.6
Cc01_g17490 Coffea canephora HOM05D002769 ORTHO05D003160 9.7e-19 96.7 79 63.3
PGR083G2315 Punica granatum HOM05D002769 ORTHO05D003160 9.7e-19 96.7 79 59.5
Rhsim01G0258600 Rhododendron simsii HOM05D002769 ORTHO05D003160 1.6e-18 95.9 81 59.3
Duzib138G1260 Durio zibethinus HOM05D002769 ORTHO05D003160 2.2e-18 95.5 80 66.2
ClCG07G001590 Citrullus lanatus HOM05D002769 ORTHO05D003160 3.7e-18 94.7 64 71.9
Oeu015447.1 Olea europaea HOM05D002769 ORTHO05D003160 4.8e-18 94.4 79 62.0
TPR.G7555 Trifolium pratense HOM05D002769 ORTHO05D003160 6.3e-18 94.0 83 63.9
MELO3C012813.2 Cucumis melo HOM05D002769 ORTHO05D003160 1.8e-17 92.4 85 60.0
Nn3g19851 Nelumbo nucifera HOM05D002769 ORTHO05D003160 1.8e-17 92.4 80 56.2
Lalb_Chr20g0113371 Lupinus albus HOM05D002769 ORTHO05D003160 2.4e-17 92.0 77 59.7
C01p10740 Brassica napus HOM05D002769 ORTHO05D003160 4.1e-17 91.3 81 59.3
BolC1t01033H Brassica oleracea HOM05D002769 ORTHO05D003160 4.1e-17 91.3 81 59.3
Ca_08766_v3 Cicer arietinum L. HOM05D002769 ORTHO05D003160 4.1e-17 91.3 86 59.3
Thhalv10024350m.g Eutrema salsugineum HOM05D002769 ORTHO05D003160 4.1e-17 91.3 80 61.2
Lalb_Chr01g0019431 Lupinus albus HOM05D002769 ORTHO05D003160 4.1e-17 91.3 80 60.0
Lsat_1_v5_gn_8_90361 Lactuca sativa HOM05D002769 ORTHO05D003160 5.3e-17 90.9 71 60.6
Psat3g050280 Pisum sativum HOM05D002769 ORTHO05D003160 6.9e-17 90.5 84 61.9
Sp7g26770 Schrenkiella parvula HOM05D002769 ORTHO05D003160 6.9e-17 90.5 84 57.1
CsaV3_3G028590 Cucumis sativus L. HOM05D002769 ORTHO05D003160 9.0e-17 90.1 81 64.2
Ah.15g093430 Amaranthus hybridus HOM05D002769 ORTHO05D003160 1.2e-16 89.7 80 60.0
AL7G23740 Arabidopsis lyrata HOM05D002769 ORTHO05D003160 1.2e-16 89.7 80 58.8
A01p09150 Brassica napus HOM05D002769 ORTHO05D003160 1.2e-16 89.7 80 58.8
BraA01t00861Z Brassica rapa HOM05D002769 ORTHO05D003160 1.2e-16 89.7 80 58.8
Nn1g03080 Nelumbo nucifera HOM05D002769 ORTHO05D003160 1.2e-16 89.7 82 54.9
TAR362G0869 Trochodendron aralioides HOM05D002769 ORTHO05D003160 1.2e-16 89.7 83 54.2
Duzib211G0696 Durio zibethinus HOM05D002769 ORTHO05D003160 1.5e-16 89.4 78 65.4
ECA236G3239 Erigeron canadensis HOM05D002769 ORTHO05D003160 2.6e-16 88.6 73 56.2
Eucgr.K03587 Eucalyptus grandis HOM05D002769 ORTHO05D003160 2.6e-16 88.6 81 59.3
AT4G28760 Arabidopsis thaliana HOM05D002769 ORTHO05D003160 1.0e-15 86.7 80 57.5
MBI07_g08924_MAGBIO Magnolia biondii HOM05D002769 ORTHO05D003160 1.0e-15 86.7 74 55.4
Sed0024831 Sechium edule HOM05D002769 ORTHO05D003160 2.2e-15 85.5 79 58.2
Carub.0007s1188 Capsella rubella HOM05D002769 ORTHO05D003160 2.9e-15 85.1 80 56.2
CARHR236550 Cardamine hirsuta HOM05D002769 ORTHO05D003160 2.9e-15 85.1 73 58.9
PGR044G1424 Punica granatum HOM05D002769 ORTHO05D003160 2.9e-15 85.1 80 57.5
QL09p043739 Quercus lobata HOM05D002769 ORTHO05D003160 2.9e-15 85.1 84 58.3
vmacro14776 Vaccinium macrocarpon HOM05D002769 ORTHO05D003160 2.9e-15 85.1 108 44.4
Medtr7g099410 Medicago truncatula HOM05D002769 ORTHO05D003160 6.5e-15 84.0 83 59.0
PSO764G0032 Papaver somniferum HOM05D002769 ORTHO05D003160 1.1e-14 83.2 77 53.2
THA.LOC104826058 Tarenaya hassleriana HOM05D002769 ORTHO05D003160 1.1e-14 83.2 79 55.7
Gohir.D07G208700 Gossypium hirsutum HOM05D002769 ORTHO05D003160 1.4e-14 82.8 57 78.9
PSO832G1375 Papaver somniferum HOM05D002769 ORTHO05D003160 1.4e-14 82.8 77 51.9
Hund05539 Selenicereus undatus HOM05D002769 ORTHO05D003160 2.5e-14 82.0 79 62.0
MSTRG.21446 Avicennia marina HOM05D002769 ORTHO05D003160 5.5e-14 80.9 71 53.5
MD10G1171400 Malus domestica HOM05D002769 ORTHO05D003160 2.7e-13 78.6 59 72.9
Lsat_1_v5_gn_9_12080 Lactuca sativa HOM05D002769 ORTHO05D003160 1.4e-12 76.3 52 69.2
Eucgr.H00827 Eucalyptus grandis HOM05D002769 ORTHO05D003160 3.0e-12 75.1 80 51.2
Sed0025022 Sechium edule HOM05D002769 ORTHO05D003160 3.0e-12 75.1 61 63.9
THA.LOC104804028 Tarenaya hassleriana HOM05D002769 ORTHO05D003160 3.0e-12 75.1 73 53.4
CsaV3_7G025430 Cucumis sativus L. HOM05D002769 ORTHO05D003160 1.1e-11 73.2 59 67.8
Aqoxy5G00058 Aquilegia oxysepala HOM05D002769 ORTHO05D003160 1.5e-11 72.8 76 48.7
MELO3C024147.2 Cucumis melo HOM05D002769 ORTHO05D003160 1.5e-11 72.8 72 62.5
SGA_v2.0_scaffold42G16160 Striga asiatica HOM05D002769 ORTHO05D003160 2.5e-11 72.0 78 55.1
ClCG09G009430 Citrullus lanatus HOM05D002769 ORTHO05D003160 3.3e-11 71.6 56 69.6
DCAR_012619 Daucus carota HOM05D002769 ORTHO05D003160 9.7e-11 70.1 44 65.9
HanXRQChr15g0468501 Helianthus annuus HOM05D002769 ORTHO05D003160 9.7e-11 70.1 56 64.3
SGA_v2.0_scaffold1G00680 Striga asiatica HOM05D002769 ORTHO05D003160 1.3e-10 69.7 80 45.0
ATR0787G113 Amborella trichopoda HOM05D002769 ORTHO05D003160 2.8e-10 68.6 88 45.5
HanXRQChr10g0280321 Helianthus annuus HOM05D002769 ORTHO05D003160 4.8e-10 67.8 56 60.7
Os02g0816400 Oryza sativa ssp. japonica HOM05D002769 ORTHO05D003160 2.4e-09 65.5 85 41.2
Zm00001eb191440 Zea mays HOM05D002769 ORTHO05D003160 2.4e-09 65.5 86 44.2
HanXRQChr13g0409001 Helianthus annuus HOM05D002769 ORTHO05D003160 5.3e-09 64.3 56 58.9
CDE02G0265 Ceratophyllum demersum HOM05D002769 ORTHO05D003160 9.1e-09 63.5 71 45.1
CDE09G0229 Ceratophyllum demersum HOM05D002769 ORTHO05D003160 2.6e-08 62.0 36 72.2
Sed0000267 Sechium edule HOM05D002769 ORTHO05D003160 2.6e-08 62.0 44 70.5
HanXRQChr10g0287231 Helianthus annuus HOM05D002769 ORTHO05D003160 1.3e-07 59.7 53 58.5
Zm00001eb258860 Zea mays HOM05D002769 ORTHO05D003160 2.2e-07 58.9 86 40.7
Cpa.g.sc8.211 Carica papaya HOM05D002769 ORTHO05D003160 6.5e-07 57.4 39 82.1
Aa31LG5G3410 Aethionema arabicum HOM05D002769 ORTHO05D003160 8.5e-07 57.0 75 46.7
Sp2g08680 Schrenkiella parvula HOM05D002769 ORTHO05D003160 2.5e-06 55.5 58 53.4
A09p20600 Brassica napus HOM05D002769 ORTHO05D003160 5.5e-06 54.3 68 44.1
BraA09t37666Z Brassica rapa HOM05D002769 ORTHO05D003160 5.5e-06 54.3 68 44.1
Carub.0008s0473 Capsella rubella HOM05D002769 ORTHO05D003160 9.4e-06 53.5 52 50.0


User provided reference genes

Program Settings