Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 7.0e-176 620.5 322 100.0
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 7.0e-176 620.5 322 100.0
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 4.6e-119 431.8 359 69.1
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 7.4e-117 424.5 356 67.7
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.7e-113 413.3 334 67.4
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 2.9e-113 412.5 356 65.7
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 2.5e-112 409.5 353 64.6
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.6e-111 405.2 364 64.3
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 6.1e-111 404.8 364 64.3
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.0e-109 399.8 355 65.1
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 2.0e-109 399.8 347 65.4
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 2.3e-102 376.3 350 63.1
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.0e-94 350.9 352 60.5
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 3.0e-94 349.4 352 59.1
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.6e-93 346.3 352 60.2
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 7.5e-93 344.7 351 59.8
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 3.7e-92 342.4 358 56.4
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 4.8e-92 342.0 350 58.9
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 1.1e-91 340.9 352 59.1
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 1.8e-91 340.1 365 57.5
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 2.4e-91 339.7 354 57.3
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 4.1e-91 339.0 348 58.9
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.6e-90 337.0 348 57.5
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.6e-90 337.0 358 57.5
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 5.9e-90 335.1 348 58.3
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 5.0e-89 332.0 354 55.6
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 6.5e-89 331.6 328 59.5
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 8.5e-89 331.3 352 57.4
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 8.5e-89 331.3 364 56.3
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 1.1e-88 330.9 353 57.2
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 4.2e-88 328.9 355 57.2
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 5.5e-88 328.6 364 56.0
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 7.2e-88 328.2 331 58.9
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 2.1e-87 326.6 357 57.4
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 2.7e-87 326.2 346 57.2
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 2.7e-87 326.2 329 61.7
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 3.6e-87 325.9 353 55.8
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 3.6e-87 325.9 327 60.2
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 3.6e-87 325.9 364 55.8
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 6.1e-87 325.1 352 55.7
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 1.0e-86 324.3 343 57.7
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 1.0e-86 324.3 361 56.8
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.8e-86 323.6 329 57.8
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 1.8e-86 323.6 329 57.8
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 4.0e-86 322.4 342 56.1
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 4.0e-86 322.4 367 53.4
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 6.8e-86 321.6 354 55.4
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.2e-85 320.9 328 58.8
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 1.5e-85 320.5 344 56.4
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 4.4e-85 318.9 306 60.5
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 4.4e-85 318.9 367 53.4
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 5.7e-85 318.5 345 56.5
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 5.7e-85 318.5 347 57.1
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 7.5e-85 318.2 328 58.5
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.2e-84 316.6 326 58.6
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 2.2e-84 316.6 344 55.8
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 3.1e-83 312.8 357 54.1
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 4.1e-83 312.4 349 57.0
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 7.0e-83 311.6 332 56.3
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 9.1e-83 311.2 347 55.9
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 2.7e-82 309.7 295 60.3
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 2.7e-82 309.7 336 55.7
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 3.5e-82 309.3 350 56.3
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 4.5e-82 308.9 364 53.8
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 5.9e-82 308.5 279 60.6
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 1.0e-81 307.8 306 58.8
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 1.7e-81 307.0 349 55.3
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 2.9e-81 306.2 356 54.5
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 2.9e-81 306.2 345 55.9
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 2.9e-81 306.2 347 56.8
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 3.2e-80 302.8 344 54.7
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 5.5e-80 302.0 347 53.3
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 3.6e-79 299.3 340 52.6
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 1.8e-78 297.0 344 54.7
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 3.0e-78 296.2 354 54.0
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 4.0e-78 295.8 339 54.6
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 1.8e-75 287.0 365 50.4
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 3.8e-73 279.3 346 52.0
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 3.8e-73 279.3 346 52.0
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 5.0e-73 278.9 339 56.3
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 6.1e-71 271.9 315 53.3
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 8.9e-70 268.1 360 49.2
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 1.4e-67 260.8 332 50.9
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 1.8e-67 260.4 332 50.6
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 2.4e-67 260.0 342 49.7
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 3.2e-67 259.6 332 51.8
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 5.4e-67 258.8 332 51.5
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 7.0e-67 258.5 332 51.5
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 1.2e-66 257.7 332 50.6
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 1.6e-66 257.3 332 51.5
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 3.5e-66 256.1 332 49.7
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 4.6e-66 255.8 338 51.8
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 2.3e-65 253.4 330 51.5
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 2.3e-65 253.4 332 50.3
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 3.9e-65 252.7 341 47.5
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 6.6e-65 251.9 334 50.9
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 8.6e-65 251.5 332 50.6
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 2.5e-64 250.0 342 47.4
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 2.5e-64 250.0 329 49.5
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 4.3e-64 249.2 330 48.8
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 4.3e-64 249.2 332 49.1
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 9.5e-64 248.1 330 49.7
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 1.2e-63 247.7 330 46.7
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 2.1e-63 246.9 332 49.4
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 8.0e-63 245.0 361 45.2
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 8.0e-63 245.0 327 48.3
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 2.3e-62 243.4 330 49.4
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.2e-61 241.1 329 47.7
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 2.2e-60 236.9 335 45.4
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 4.1e-59 232.6 332 44.3
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 3.9e-57 226.1 277 48.4
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 1.1e-56 224.6 285 48.1
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 2.8e-55 219.9 249 55.0
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.8e-54 217.2 344 42.4
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.3e-54 216.9 239 56.1
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 4.4e-53 212.6 231 50.2
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.7e-52 210.7 164 68.3
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 2.9e-52 209.9 324 44.1
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 8.6e-49 198.4 258 51.6
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.9e-44 183.3 242 51.2
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 6.4e-44 182.2 242 50.8
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 6.0e-42 175.6 191 47.6
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 5.8e-37 159.1 177 54.2
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 3.0e-33 146.7 181 51.4
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 4.9e-28 129.4 154 53.2
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 1.1e-27 128.3 120 55.0
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 2.8e-23 113.6 292 31.2
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 1.6e-18 97.8 104 51.0
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 6.7e-17 92.4 82 62.2
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 6.7e-17 92.4 269 31.6
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 7.4e-16 89.0 145 44.8
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 2.8e-15 87.0 130 50.0
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 6.2e-15 85.9 108 54.6
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 6.5e-12 75.9 57 63.2
unitig_747.g21900 Utricularia gibba HOM05D005260 ORTHO05D006390 5.1e-09 66.2 81 51.9
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 6.7e-09 65.9 82 47.6
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 1.3e-07 61.6 41 65.9


User provided reference genes

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