Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42872 Davidia involucrata HOM05D001532 ORTHO05D001402 7.6e-36 153.3 77 100.0
Dinv39650 Davidia involucrata HOM05D001532 ORTHO05D001402 5.9e-12 73.9 43 88.4
Dinv44677 Davidia involucrata HOM05D001488 ORTHO05D001456 7.9e-09 63.5 42 71.4
Dinv43942 Davidia involucrata HOM05D001532 ORTHO05D001402 2.3e-08 62.0 42 69.0
Lj7P562T18 Lonicera japonica HOM05D001532 ORTHO05D001402 2.3e-08 62.0 38 76.3
RcHm_v2.0_Chr1g0313211 Rosa chinensis HOM05D001532 ORTHO05D001402 2.3e-08 62.0 41 73.2
Hma1.2p1_0541F.1_g174820 Hydrangea macrophylla HOM05D001532 ORTHO05D001402 3.0e-08 61.6 40 72.5
FvH4_7g00040 Fragaria vesca HOM05D001532 ORTHO05D001402 3.9e-08 61.2 43 67.4
FAN03G1035 Fragaria x ananassa HOM05D001532 ORTHO05D001402 3.9e-08 61.2 43 67.4
FAN06G0369 Fragaria x ananassa HOM05D001532 ORTHO05D001402 3.9e-08 61.2 43 67.4
FAN10G0410 Fragaria x ananassa HOM05D001532 ORTHO05D001402 3.9e-08 61.2 43 67.4
Gohir.A04G057000 Gossypium hirsutum HOM05D001532 ORTHO05D001402 3.9e-08 61.2 42 69.0
Gohir.D04G094000 Gossypium hirsutum HOM05D001532 ORTHO05D001402 3.9e-08 61.2 42 69.0
Gorai.009G393300 Gossypium raimondii HOM05D001532 ORTHO05D001402 3.9e-08 61.2 42 69.0
TAR623G0472 Trochodendron aralioides HOM05D001532 ORTHO05D001402 3.9e-08 61.2 38 78.9
RcHm_v2.0_Chr1g0331981 Rosa chinensis HOM05D001532 ORTHO05D001402 5.1e-08 60.8 46 63.0
RcHm_v2.0_Chr5g0065041 Rosa chinensis HOM05D001532 ORTHO05D001402 5.1e-08 60.8 46 63.0
AL4G43270 Arabidopsis lyrata HOM05D001532 ORTHO05D001402 6.7e-08 60.5 42 69.0
COL.COLO4_29440 Corchorus olitorius HOM05D001532 ORTHO05D001402 6.7e-08 60.5 42 66.7
RcHm_v2.0_Chr4g0404011 Rosa chinensis HOM05D001532 ORTHO05D001402 6.7e-08 60.5 46 63.0
Cc02_g26870 Coffea canephora HOM05D001532 ORTHO05D001402 8.8e-08 60.1 42 64.3
Potri.001G231100 Populus trichocarpa HOM05D001532 ORTHO05D001402 8.8e-08 60.1 42 69.0
Rhsim07G0049600 Rhododendron simsii HOM05D001532 ORTHO05D001402 8.8e-08 60.1 40 70.0
Eucgr.E01779 Eucalyptus grandis HOM05D001532 ORTHO05D001402 1.1e-07 59.7 42 69.0
Aa31LG1G25920 Aethionema arabicum HOM05D001343 ORTHO05D002008 1.5e-07 59.3 42 69.0
BcaB01g03320 Brassica carinata HOM05D001532 ORTHO05D001402 1.5e-07 59.3 42 64.3
Dinv43501 Davidia involucrata HOM05D000126 ORTHO05D001402 1.5e-07 59.3 42 69.0
Duzib093G0614 Durio zibethinus HOM05D001532 ORTHO05D001402 1.5e-07 59.3 42 69.0
Thhalv10001674m.g Eutrema salsugineum HOM05D001532 ORTHO05D001402 1.5e-07 59.3 42 66.7
Aqoxy1G00154 Aquilegia oxysepala HOM05D001532 ORTHO05D001402 2.0e-07 58.9 43 62.8
CARHR139480 Cardamine hirsuta HOM05D001532 ORTHO05D001402 2.0e-07 58.9 42 66.7
Cpa.g.c26789.3 Carica papaya HOM05D001532 ORTHO05D001402 2.0e-07 58.9 42 64.3
FAN01G2178 Fragaria x ananassa HOM05D001532 ORTHO05D001402 2.0e-07 58.9 43 65.1
Nn2g15744 Nelumbo nucifera HOM05D001532 ORTHO05D001402 2.0e-07 58.9 38 73.7
PGR142G1780 Punica granatum HOM05D001532 ORTHO05D001402 2.0e-07 58.9 42 64.3
AT2G44310 Arabidopsis thaliana HOM05D001532 ORTHO05D001402 2.6e-07 58.5 42 66.7
Glyma.15G217700 Glycine max HOM05D001532 ORTHO05D001402 2.6e-07 58.5 40 70.0
Nn7g35962 Nelumbo nucifera HOM05D001532 ORTHO05D001402 2.6e-07 58.5 39 71.8
Sabra16G0138600 Salix brachista HOM05D001532 ORTHO05D001402 2.6e-07 58.5 42 66.7
Sp4g26380 Schrenkiella parvula HOM05D001532 ORTHO05D001402 2.6e-07 58.5 60 51.7
Thecc.05G180700 Theobroma cacao HOM05D001532 ORTHO05D001402 2.6e-07 58.5 42 66.7
Actinidia05842 Actinidia chinensis HOM05D001532 ORTHO05D001402 3.3e-07 58.2 42 64.3
ECA236G3146 Erigeron canadensis HOM05D001532 ORTHO05D001402 3.3e-07 58.2 43 67.4
Oeu060704.1 Olea europaea HOM05D001532 ORTHO05D001402 3.3e-07 58.2 42 66.7
Solyc01g073710.2 Solanum lycopersicum HOM05D001532 ORTHO05D001402 3.3e-07 58.2 40 70.0
Sopen01g033280 Solanum pennellii HOM05D001532 ORTHO05D001402 3.3e-07 58.2 40 70.0
PGSC0003DMG400028985 Solanum tuberosum HOM05D001532 ORTHO05D001402 3.3e-07 58.2 40 70.0
Atru.chr11.2710 Acer truncatum HOM05D001532 ORTHO05D001402 4.4e-07 57.8 42 64.3
arahy.Tifrunner.gnm1.ann1.M3EH65 Arachis hypogaea HOM05D001532 ORTHO05D001402 4.4e-07 57.8 40 67.5
BolC3t15301H Brassica oleracea HOM05D001532 ORTHO05D001402 4.4e-07 57.8 42 61.9
BraA03t11682Z Brassica rapa HOM05D001532 ORTHO05D001402 4.4e-07 57.8 42 61.9
CDE05G2849 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 4.4e-07 57.8 42 64.3
CDE05G3642 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 4.4e-07 57.8 42 64.3
Medtr8g446810 Medicago truncatula HOM05D001532 ORTHO05D001402 4.4e-07 57.8 40 65.0
vmacro13607 Vaccinium macrocarpon HOM05D001532 ORTHO05D001402 4.4e-07 57.8 42 61.9
VMungo1127G1150 Vigna mungo HOM05D001532 ORTHO05D001402 4.4e-07 57.8 40 67.5
CSS0029713 Camellia sinensis var. sinensis HOM05D001532 ORTHO05D001402 5.7e-07 57.4 42 64.3
Ciclev10033019m.g Citrus clementina HOM05D001532 ORTHO05D001402 5.7e-07 57.4 42 66.7
MBI13_g42369_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 5.7e-07 57.4 38 71.1
Phvul.011G181100 Phaseolus vulgaris HOM05D001532 ORTHO05D001402 5.7e-07 57.4 40 67.5
Carub.0004s2690 Capsella rubella HOM05D001532 ORTHO05D001402 7.4e-07 57.0 42 64.3
Lsat_1_v5_gn_1_56441 Lactuca sativa HOM05D001532 ORTHO05D001402 7.4e-07 57.0 43 62.8
Nitab4.5_0000468g0100 Nicotiana tabacum HOM05D001532 ORTHO05D001402 7.4e-07 57.0 40 67.5
Nitab4.5_0002319g0010 Nicotiana tabacum HOM05D001532 ORTHO05D001402 7.4e-07 57.0 40 67.5
Prupe.2G002300 Prunus persica HOM05D001532 ORTHO05D001402 7.4e-07 57.0 42 61.9
unitig_0.g1367 Utricularia gibba HOM05D001532 ORTHO05D001402 7.4e-07 57.0 43 62.8
CAN.G129.51 Capsicum annuum HOM05D001532 ORTHO05D001402 9.7e-07 56.6 40 67.5
Ca_11281_v3 Cicer arietinum L. HOM05D001532 ORTHO05D001402 9.7e-07 56.6 42 59.5
Dinv06817 Davidia involucrata HOM05D001532 ORTHO05D001402 9.7e-07 56.6 45 62.2
FAN01G2635 Fragaria x ananassa HOM05D001532 ORTHO05D001402 9.7e-07 56.6 43 62.8
Lsat_1_v5_gn_7_33641 Lactuca sativa HOM05D001532 ORTHO05D001402 9.7e-07 56.6 68 50.0
Lj3g0006104 Lotus japonicus HOM05D001532 ORTHO05D001402 9.7e-07 56.6 40 65.0
MBI13_g29648_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 9.7e-07 56.6 38 68.4
THA.LOC104817147 Tarenaya hassleriana HOM05D001532 ORTHO05D001402 9.7e-07 56.6 42 64.3
MELO3C023929.2 Cucumis melo HOM05D001532 ORTHO05D001402 1.3e-06 56.2 40 65.0
CsaV3_3G032560 Cucumis sativus L. HOM05D001532 ORTHO05D001402 1.3e-06 56.2 40 65.0
QL04p001582 Quercus lobata HOM05D001532 ORTHO05D001402 1.3e-06 56.2 42 59.5
MSTRG.28102 Avicennia marina HOM05D001532 ORTHO05D001402 1.7e-06 55.8 42 64.3
Cfa010707 Carpinus fangiana HOM05D001532 ORTHO05D001402 1.7e-06 55.8 42 61.9
ClCG10G012730 Citrullus lanatus HOM05D001532 ORTHO05D001402 1.7e-06 55.8 38 71.1
BcaC01g05176 Brassica carinata HOM05D001532 ORTHO05D001402 2.2e-06 55.5 42 59.5
A03p24750 Brassica napus HOM05D001532 ORTHO05D001402 2.2e-06 55.5 42 59.5
TWI09G0577 Tripterygium wilfordii HOM05D001532 ORTHO05D001402 2.2e-06 55.5 73 46.6
C03p29520 Brassica napus HOM05D001532 ORTHO05D001402 2.8e-06 55.1 38 65.8
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 2.8e-06 55.1 42 59.5
Migut.B01403 Erythranthe guttata HOM05D001532 ORTHO05D001402 2.8e-06 55.1 42 61.9
PSO801G0571 Papaver somniferum HOM05D001532 ORTHO05D001402 2.8e-06 55.1 39 69.2
Psat4g142600 Pisum sativum HOM05D001532 ORTHO05D001402 2.8e-06 55.1 42 59.5
Lj9P619T33 Lonicera japonica HOM05D001532 ORTHO05D001402 3.7e-06 54.7 40 62.5
MD02G1319800 Malus domestica HOM05D001532 ORTHO05D001402 3.7e-06 54.7 42 59.5
Sed0007522 Sechium edule HOM05D001532 ORTHO05D001402 3.7e-06 54.7 42 61.9
SGA_v2.0_scaffold5G03105 Striga asiatica HOM05D001532 ORTHO05D001402 4.8e-06 54.3 41 63.4
Gohir.A01G198700 Gossypium hirsutum HOM05D001532 ORTHO05D001402 6.3e-06 53.9 40 65.0
Gohir.D01G188900 Gossypium hirsutum HOM05D001532 ORTHO05D001402 6.3e-06 53.9 40 65.0
Gorai.002G232400 Gossypium raimondii HOM05D001532 ORTHO05D001402 6.3e-06 53.9 40 65.0
TPR.G27881 Trifolium pratense HOM05D001532 ORTHO05D001402 6.3e-06 53.9 40 62.5


User provided reference genes

Program Settings