Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42807 Davidia involucrata HOM05D005808 ORTHO05D006196 1.7e-72 275.8 132 100.0
Dinv43294 Davidia involucrata HOM05D005808 ORTHO05D006196 1.7e-72 275.8 132 100.0
Lj9A723T41 Lonicera japonica HOM05D005808 ORTHO05D006196 1.6e-25 119.8 72 77.8
Lj9C724T6 Lonicera japonica HOM05D005808 ORTHO05D006196 1.6e-25 119.8 72 77.8
CSS0038851 Camellia sinensis var. sinensis HOM05D005808 ORTHO05D006196 3.9e-24 115.2 74 78.4
Hma1.2p1_0284F.1_g113760 Hydrangea macrophylla HOM05D005808 ORTHO05D006196 6.7e-24 114.4 66 86.4
Nn5g27515 Nelumbo nucifera HOM05D005808 ORTHO05D006196 9.7e-23 110.5 76 71.1
Actinidia12360 Actinidia chinensis HOM05D005808 ORTHO05D006196 3.7e-22 108.6 72 76.4
DCAR_024732 Daucus carota HOM05D005808 ORTHO05D006196 4.8e-22 108.2 72 72.2
Potri.018G101700 Populus trichocarpa HOM05D005808 ORTHO05D006196 4.8e-22 108.2 74 73.0
ClCG02G014280 Citrullus lanatus HOM05D005808 ORTHO05D006196 6.3e-22 107.8 61 85.2
MELO3C004113.2 Cucumis melo HOM05D005808 ORTHO05D006196 6.3e-22 107.8 61 85.2
Potri.006G179100 Populus trichocarpa HOM05D005808 ORTHO05D006196 6.3e-22 107.8 74 73.0
TAR626G1850 Trochodendron aralioides HOM05D005808 ORTHO05D006196 6.3e-22 107.8 76 69.7
CsaV3_2G007730 Cucumis sativus L. HOM05D005808 ORTHO05D006196 1.1e-21 107.1 61 83.6
Haze_19066 Corylus avellana HOM05D005808 ORTHO05D006196 1.4e-21 106.7 61 83.6
Haze_19072 Corylus avellana HOM05D005808 ORTHO05D006196 1.4e-21 106.7 61 83.6
TAR383G0114 Trochodendron aralioides HOM05D005808 ORTHO05D006196 1.4e-21 106.7 70 74.3
GSVIVG01023706001 Vitis vinifera HOM05D005808 ORTHO05D006196 1.4e-21 106.7 70 72.9
Lalb_Chr19g0124141 Lupinus albus HOM05D005808 ORTHO05D006196 2.4e-21 105.9 77 66.2
Sed0024595 Sechium edule HOM05D005808 ORTHO05D006196 2.4e-21 105.9 61 83.6
CANSAT11G2252 Cannabis sativa HOM05D005808 ORTHO05D006196 6.9e-21 104.4 77 67.5
arahy.Tifrunner.gnm1.ann1.9Q453L Arachis hypogaea HOM05D005808 ORTHO05D006196 9.1e-21 104.0 77 66.2
Manes.04G001000 Manihot esculenta HOM05D005808 ORTHO05D006196 9.1e-21 104.0 74 67.6
Ca_07714_v3 Cicer arietinum L. HOM05D005808 ORTHO05D006196 1.2e-20 103.6 79 63.3
Psat0s2845g0200 Pisum sativum HOM05D005808 ORTHO05D006196 1.2e-20 103.6 77 64.9
Sabra18G0087400 Salix brachista HOM05D005808 ORTHO05D006196 1.2e-20 103.6 75 72.0
Eucgr.C01236 Eucalyptus grandis HOM05D005808 ORTHO05D006196 1.5e-20 103.2 75 68.0
FvH4_4g08850 Fragaria vesca HOM05D005808 ORTHO05D006196 1.5e-20 103.2 62 79.0
FAN12G3030 Fragaria x ananassa HOM05D005808 ORTHO05D006196 1.5e-20 103.2 62 79.0
Phvul.008G090200 Phaseolus vulgaris HOM05D005808 ORTHO05D006196 1.5e-20 103.2 77 66.2
PGR102G1617 Punica granatum HOM05D005808 ORTHO05D006196 1.5e-20 103.2 66 72.7
SalBow6G0126 Salvia bowleyana HOM05D005808 ORTHO05D006196 1.5e-20 103.2 66 77.3
Lj1g0001762 Lotus japonicus HOM05D005808 ORTHO05D006196 2.6e-20 102.4 78 64.1
MD05G1099800 Malus domestica HOM05D005808 ORTHO05D006196 2.6e-20 102.4 76 67.1
Prupe.1G100900 Prunus persica HOM05D005808 ORTHO05D006196 2.6e-20 102.4 76 71.1
Sed0021443 Sechium edule HOM05D005808 ORTHO05D006196 2.6e-20 102.4 61 80.3
arahy.Tifrunner.gnm1.ann1.R51DI5 Arachis hypogaea HOM05D005808 ORTHO05D006196 3.4e-20 102.1 77 64.9
Glyma.09G280100 Glycine max HOM05D005808 ORTHO05D006196 4.5e-20 101.7 60 80.0
PSO063G5527 Papaver somniferum HOM05D005808 ORTHO05D006196 4.5e-20 101.7 66 66.7
QL02p094407 Quercus lobata HOM05D005808 ORTHO05D006196 4.5e-20 101.7 75 68.0
Rhsim01G0021100 Rhododendron simsii HOM05D000821 ORTHO05D006196 4.5e-20 101.7 66 74.2
Gohir.A05G007600 Gossypium hirsutum HOM05D005808 ORTHO05D006196 7.7e-20 100.9 68 70.6
Gohir.D05G008500 Gossypium hirsutum HOM05D005808 ORTHO05D006196 7.7e-20 100.9 68 70.6
Gorai.009G008600 Gossypium raimondii HOM05D005808 ORTHO05D006196 7.7e-20 100.9 68 70.6
PSO782G2734 Papaver somniferum HOM05D005808 ORTHO05D006196 7.7e-20 100.9 66 68.2
Cc06_g14220 Coffea canephora HOM05D005808 ORTHO05D006196 1.0e-19 100.5 64 75.0
Thhalv10018855m.g Eutrema salsugineum HOM05D005808 ORTHO05D006196 1.0e-19 100.5 61 77.0
Nitab4.5_0001036g0010 Nicotiana tabacum HOM05D005808 ORTHO05D006196 1.0e-19 100.5 62 77.4
Sp5g28220 Schrenkiella parvula HOM05D005808 ORTHO05D006196 1.0e-19 100.5 61 77.0
TPR.G18676 Trifolium pratense HOM05D005808 ORTHO05D006196 1.0e-19 100.5 61 75.4
CiPaw.15G163400 Carya illinoinensis HOM05D005808 ORTHO05D006196 1.3e-19 100.1 61 77.0
Duzib168G1041 Durio zibethinus HOM05D005808 ORTHO05D006196 1.3e-19 100.1 68 67.6
Migut.J01400 Erythranthe guttata HOM05D005808 ORTHO05D006196 1.3e-19 100.1 62 79.0
Thecc.09G155400 Theobroma cacao HOM05D005808 ORTHO05D006196 1.3e-19 100.1 68 69.1
VMungo1383G1013 Vigna mungo HOM05D005808 ORTHO05D006196 1.3e-19 100.1 78 64.1
Aa31LG7G2700 Aethionema arabicum HOM05D005808 ORTHO05D006196 1.7e-19 99.8 63 76.2
Aqoxy7G03270 Aquilegia oxysepala HOM05D005808 ORTHO05D006196 1.7e-19 99.8 61 77.0
MSTRG.6169 Avicennia marina HOM05D005808 ORTHO05D006196 1.7e-19 99.8 66 72.7
EL10Ac8g18896 Beta vulgaris HOM05D005808 ORTHO05D006196 1.7e-19 99.8 66 74.2
Ciclev10008917m.g Citrus clementina HOM05D005808 ORTHO05D006196 1.7e-19 99.8 74 66.2
HanXRQChr06g0170251 Helianthus annuus HOM05D005808 ORTHO05D006196 1.7e-19 99.8 62 79.0
RcHm_v2.0_Chr4g0405311 Rosa chinensis HOM05D005808 ORTHO05D006196 1.7e-19 99.8 61 75.4
Sc18g0003190 Simmondsia chinensis HOM05D005808 ORTHO05D006196 1.7e-19 99.8 61 78.7
FAN17G0928 Fragaria x ananassa HOM05D005808 ORTHO05D006196 2.2e-19 99.4 61 77.0
Medtr7g108490 Medicago truncatula HOM05D005808 ORTHO05D006196 2.2e-19 99.4 60 76.7
BcaB03g15037 Brassica carinata HOM05D005808 ORTHO05D006196 2.9e-19 99.0 61 77.0
BcaC08g46743 Brassica carinata HOM05D005808 ORTHO05D006196 2.9e-19 99.0 61 77.0
C06p47390 Brassica napus HOM05D005808 ORTHO05D006196 2.9e-19 99.0 61 77.0
BolC6t39778H Brassica oleracea HOM05D005808 ORTHO05D006196 2.9e-19 99.0 61 77.0
CARHR066260 Cardamine hirsuta HOM05D005808 ORTHO05D006196 2.9e-19 99.0 67 70.1
Cpa.g.sc43.20 Carica papaya HOM05D005808 ORTHO05D006196 2.9e-19 99.0 61 78.7
A07p39200 Brassica napus HOM05D005808 ORTHO05D006196 3.8e-19 98.6 61 77.0
AUR62028366 Chenopodium quinoa HOM05D005808 ORTHO05D006196 3.8e-19 98.6 61 78.7
Haze_01022 Corylus avellana HOM05D005808 ORTHO05D006196 3.8e-19 98.6 61 77.0
Glyma.18G208900 Glycine max HOM05D005808 ORTHO05D006196 3.8e-19 98.6 60 78.3
HanXRQChr15g0468821 Helianthus annuus HOM05D005808 ORTHO05D006196 3.8e-19 98.6 72 66.7
MD10G1105500 Malus domestica HOM05D005808 ORTHO05D006196 3.8e-19 98.6 61 73.8
THA.LOC104812192 Tarenaya hassleriana HOM05D005808 ORTHO05D006196 3.8e-19 98.6 61 75.4
Lj6g0026768 Lotus japonicus HOM05D005808 ORTHO05D006196 5.0e-19 98.2 61 73.8
Nitab4.5_0002809g0070 Nicotiana tabacum HOM05D005808 ORTHO05D006196 5.0e-19 98.2 62 75.8
Peaxi162Scf00038g00063 Petunia axillaris HOM05D005808 ORTHO05D006196 5.0e-19 98.2 62 75.8
BraA07t31469Z Brassica rapa HOM05D005808 ORTHO05D006196 6.5e-19 97.8 61 77.0
TWI34G0184 Tripterygium wilfordii HOM05D005808 ORTHO05D006196 6.5e-19 97.8 78 60.3
PGSC0003DMG400011158 Solanum tuberosum HOM05D005808 ORTHO05D006196 8.5e-19 97.4 62 77.4
unitig_748.g7192 Utricularia gibba HOM05D005808 ORTHO05D006196 8.5e-19 97.4 60 80.0
AL1G30250 Arabidopsis lyrata HOM05D005808 ORTHO05D006196 1.1e-18 97.1 62 74.2
AT1G17890 Arabidopsis thaliana HOM05D005808 ORTHO05D006196 1.1e-18 97.1 62 74.2
Solyc07g006070.1 Solanum lycopersicum HOM05D005808 ORTHO05D006196 1.4e-18 96.7 62 75.8
Sopen07g002190 Solanum pennellii HOM05D005808 ORTHO05D006196 1.4e-18 96.7 62 75.8
CiPaw.16G105900 Carya illinoinensis HOM05D005808 ORTHO05D006196 1.9e-18 96.3 65 69.2
SHI02828 Sapria himalayana HOM05D005808 ORTHO05D006196 1.9e-18 96.3 68 66.2
SGA_v2.0_scaffold45G17002 Striga asiatica HOM05D005808 ORTHO05D006196 1.9e-18 96.3 66 69.7
BcaB07g34013 Brassica carinata HOM05D005808 ORTHO05D006196 2.5e-18 95.9 61 72.1
C05p16270 Brassica napus HOM05D005808 ORTHO05D006196 2.5e-18 95.9 61 72.1
BolC5t30329H Brassica oleracea HOM05D005808 ORTHO05D006196 2.5e-18 95.9 61 72.1
Sp1g15980 Schrenkiella parvula HOM05D005808 ORTHO05D006196 2.5e-18 95.9 61 73.8
AL2G33020 Arabidopsis lyrata HOM05D005808 ORTHO05D006196 3.2e-18 95.5 61 72.1
Actinidia25650 Actinidia chinensis HOM05D005808 ORTHO05D006196 4.2e-18 95.1 82 64.6
Carub.0001s1762 Capsella rubella HOM05D005808 ORTHO05D006196 4.2e-18 95.1 61 73.8
AT1G73250 Arabidopsis thaliana HOM05D005808 ORTHO05D006196 5.5e-18 94.7 61 70.5
A08p30670 Brassica napus HOM05D002264 ORTHO05D002413 5.5e-18 94.7 61 72.1
CARHR018500 Cardamine hirsuta HOM05D005808 ORTHO05D006196 5.5e-18 94.7 60 75.0
SGA_v2.0_scaffold265G46071 Striga asiatica HOM05D005808 ORTHO05D006196 5.5e-18 94.7 65 70.8
ATR0332G026 Amborella trichopoda HOM05D005808 ORTHO05D006196 7.2e-18 94.4 61 73.8
BcaC07g38879 Brassica carinata HOM05D000226 ORTHO05D006196 7.2e-18 94.4 64 70.3
A06p13950 Brassica napus HOM05D005808 ORTHO05D006196 7.2e-18 94.4 61 70.5
BraA06t24535Z Brassica rapa HOM05D002264 ORTHO05D002413 7.2e-18 94.4 61 70.5
AUR62025384 Chenopodium quinoa HOM05D005808 ORTHO05D006196 7.2e-18 94.4 61 73.8
ECA233G5554 Erigeron canadensis HOM05D005808 ORTHO05D006196 7.2e-18 94.4 62 72.6
CDE11G1052 Ceratophyllum demersum HOM05D005808 ORTHO05D006196 9.4e-18 94.0 66 66.7
Thhalv10008184m.g Eutrema salsugineum HOM05D005808 ORTHO05D006196 9.4e-18 94.0 61 72.1
Lsat_1_v5_gn_5_72880 Lactuca sativa HOM05D005808 ORTHO05D006196 1.2e-17 93.6 62 71.0
Zm00001eb388990 Zea mays HOM05D005808 ORTHO05D006196 3.6e-17 92.0 61 67.2
SEGI_01162 Sequoiadendron giganteum HOM05D005808 ORTHO05D006196 6.1e-17 91.3 67 59.7
Os06g0652400 Oryza sativa ssp. japonica HOM05D005808 ORTHO05D006196 2.3e-16 89.4 61 67.2
SMO143G0303 Selaginella moellendorffii HOM05D005808 ORTHO05D006196 2.0e-15 86.3 62 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3310 Anthoceros agrestis HOM05D005808 ORTHO05D006196 3.3e-15 85.5 62 59.7
MBI14_g16421_MAGBIO Magnolia biondii HOM05D005808 ORTHO05D006196 3.3e-15 85.5 61 67.2
Pp3c10_6390 Physcomitrium patens HOM05D005808 ORTHO05D006196 1.3e-14 83.6 62 61.3
CBR_g8654 Chara braunii HOM05D005808 ORTHO05D006196 2.2e-14 82.8 60 63.3
Os06g0652300 Oryza sativa ssp. japonica HOM05D005808 ORTHO05D006196 4.8e-14 81.6 61 62.3
Mapoly0064s0048 Marchantia polymorpha HOM05D005808 ORTHO05D006196 6.3e-14 81.3 62 56.5
CAN.G1190.16 Capsicum annuum HOM05D005808 ORTHO05D006196 7.0e-13 77.8 63 63.5


User provided reference genes

Program Settings