Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 2.4e-272 941.8 558 100.0
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 5.8e-93 345.9 530 47.0
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 1.3e-71 275.0 357 51.5
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.8e-49 201.4 617 30.3
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.3e-48 197.2 620 29.7
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 9.4e-43 179.1 362 38.7
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 9.4e-43 179.1 362 38.7
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.8e-41 174.9 668 27.2
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 8.8e-41 172.6 352 36.4
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 1.1e-40 172.2 348 37.6
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 1.5e-40 171.8 352 36.1
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 4.4e-40 170.2 356 37.1
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 7.4e-40 169.5 474 31.4
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 9.1e-38 162.5 350 34.9
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.1e-35 155.6 354 35.3
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 1.9e-35 154.8 350 35.1
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 5.5e-35 153.3 210 54.3
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.6e-34 150.6 242 46.3
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 1.0e-33 149.1 357 33.1
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 1.0e-33 149.1 352 35.5
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 1.1e-32 145.6 356 30.9
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 2.6e-32 144.4 359 32.6
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.8e-31 141.0 343 34.4
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.8e-31 141.0 343 34.4
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 4.1e-30 137.1 264 36.4
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 1.2e-29 135.6 354 32.5
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 3.8e-28 130.6 215 41.9
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 5.0e-28 130.2 361 32.4
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.0e-28 130.2 351 29.6
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.1e-27 129.0 209 43.5
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 1.5e-27 128.6 247 42.5
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 2.5e-27 127.9 252 40.1
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 2.1e-26 124.8 294 36.7
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 2.7e-26 124.4 363 32.0
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.7e-26 124.4 368 33.2
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 3.6e-26 124.0 215 39.5
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 4.7e-26 123.6 366 32.2
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 1.0e-25 122.5 160 46.2
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 1.4e-25 122.1 350 30.6
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 1.3e-23 115.5 202 43.1
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 1.7e-23 115.2 350 30.6
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 2.8e-23 114.4 213 39.9
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 8.3e-23 112.8 362 29.8
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 2.0e-21 108.2 207 36.2
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.5e-21 107.1 254 34.6
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.3e-20 105.5 212 31.6
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 5.0e-20 103.6 172 47.7
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 1.1e-19 102.4 212 38.7
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.2e-19 100.9 211 37.9
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 7.2e-19 99.8 204 39.7
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 7.2e-19 99.8 211 34.1
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.2e-18 99.0 350 29.1
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 1.6e-18 98.6 357 27.7
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 2.7e-18 97.8 201 32.8
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 2.7e-18 97.8 257 34.2
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 3.6e-18 97.4 267 32.2
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 3.6e-18 97.4 195 41.5
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 3.6e-18 97.4 307 30.3
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 2.3e-17 94.7 231 34.2
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 2.3e-17 94.7 210 37.1
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.0e-17 94.0 340 27.9
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 5.2e-17 93.6 201 35.3
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 6.8e-17 93.2 223 36.3
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-16 92.4 203 34.0
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 2.0e-16 91.7 200 36.5
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 2.0e-16 91.7 200 36.5
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.6e-16 91.3 349 26.4
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.4e-16 90.9 207 33.8
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 7.5e-16 89.7 203 35.5
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 7.5e-16 89.7 243 32.9
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 3.7e-15 87.4 163 40.5
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 4.9e-15 87.0 201 33.3
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 4.9e-15 87.0 283 30.4
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 4.9e-15 87.0 201 33.3
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 8.3e-15 86.3 203 35.5
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 1.4e-14 85.5 222 33.3
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.4e-14 85.5 368 28.3
SalBow6G1594 Salvia bowleyana HOM05D004960 ORTHO05D004696 1.4e-14 85.5 302 30.5
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.4e-14 85.5 359 26.7
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 1.8e-14 85.1 203 34.0
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 1.8e-14 85.1 203 34.0
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 4.1e-14 84.0 259 31.3
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 4.1e-14 84.0 213 31.5
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 9.2e-14 82.8 198 34.3
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.2e-13 82.4 214 33.6
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 1.6e-13 82.0 248 31.0
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.6e-13 82.0 214 33.2
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 4.5e-13 80.5 348 26.1
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 4.5e-13 80.5 185 33.0
Migut.J01427 Erythranthe guttata HOM05D015143 ORTHO05D004696 4.5e-13 80.5 366 29.5
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 5.9e-13 80.1 246 30.9
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 5.9e-13 80.1 217 33.2
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 7.7e-13 79.7 248 30.6
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 1.3e-12 79.0 245 29.4
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 1.3e-12 79.0 180 35.0
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 1.7e-12 78.6 272 32.4
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 2.9e-12 77.8 201 33.3
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 5.0e-12 77.0 346 26.0
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.6e-12 76.6 196 33.7
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 8.6e-12 76.3 198 33.3
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 2.5e-11 74.7 198 31.8
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 2.5e-11 74.7 198 31.8
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 2.5e-11 74.7 201 33.3
BcaC01g02853 Brassica carinata HOM05D004960 ORTHO05D004696 4.3e-11 73.9 288 29.5
BolC3t18198H Brassica oleracea HOM05D004960 ORTHO05D004696 4.3e-11 73.9 288 29.5
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 5.6e-11 73.6 396 26.0
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 7.3e-11 73.2 192 32.3
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 9.5e-11 72.8 200 32.5
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 9.5e-11 72.8 200 32.5
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 9.5e-11 72.8 247 30.8
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 1.2e-10 72.4 265 29.1
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 2.8e-10 71.2 192 31.2
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 4.7e-10 70.5 145 34.5
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 6.1e-10 70.1 213 27.2
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 6.1e-10 70.1 122 40.2
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-09 68.9 247 30.8
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.8e-09 68.6 204 28.4
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.8e-09 68.6 137 31.4
Sabra02G0057700 Salix brachista HOM05D001062 ORTHO05D000884 2.3e-09 68.2 199 33.7
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 4.0e-09 67.4 204 28.4
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 5.2e-09 67.0 200 34.5
Peaxi162Scf00457g00315 Petunia axillaris HOM05D004960 ORTHO05D004696 5.2e-09 67.0 130 37.7
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 6.8e-09 66.6 170 30.0
Migut.J01428 Erythranthe guttata HOM05D015143 ORTHO05D004696 8.9e-09 66.2 200 32.0
Cfa002901 Carpinus fangiana HOM05D001062 ORTHO05D000884 1.2e-08 65.9 156 34.6
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.5e-08 65.5 206 31.1
BcaB08g34825 Brassica carinata HOM05D004960 ORTHO05D004696 2.0e-08 65.1 354 24.0
Cpa.g.sc42.160 Carica papaya HOM05D001062 ORTHO05D000884 2.6e-08 64.7 208 32.7
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 2.6e-08 64.7 161 33.5
BcaC06g36453 Brassica carinata HOM05D004960 ORTHO05D004696 4.4e-08 63.9 183 31.7
Haze_25253 Corylus avellana HOM05D001062 ORTHO05D000884 4.4e-08 63.9 156 34.0
Lj4P839T38 Lonicera japonica HOM05D001062 ORTHO05D000884 5.7e-08 63.5 193 31.6
QL11p005284 Quercus lobata HOM05D001062 ORTHO05D000884 5.7e-08 63.5 194 30.9
Thecc.01G133100 Theobroma cacao HOM05D001062 ORTHO05D000884 5.7e-08 63.5 193 31.6
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 7.5e-08 63.2 166 29.5
Actinidia35990 Actinidia chinensis HOM05D004960 ORTHO05D004696 9.8e-08 62.8 174 35.6
CANSAT01G0561 Cannabis sativa HOM05D001062 ORTHO05D000884 1.3e-07 62.4 197 31.0
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 1.7e-07 62.0 288 28.1
Eucgr.F04013 Eucalyptus grandis HOM05D004960 ORTHO05D004696 2.2e-07 61.6 194 27.8
Potri.002G074200 Populus trichocarpa HOM05D001062 ORTHO05D000884 2.2e-07 61.6 177 33.9
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 2.9e-07 61.2 253 26.9
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 2.9e-07 61.2 206 29.1
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 2.9e-07 61.2 206 29.1
MBI03_g37383_MAGBIO Magnolia biondii HOM05D001062 ORTHO05D000884 3.7e-07 60.8 155 31.6
Dinv24369 Davidia involucrata HOM05D001062 ORTHO05D000884 4.9e-07 60.5 206 29.6
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 6.4e-07 60.1 358 22.3
arahy.Tifrunner.gnm1.ann1.NA9T15 Arachis hypogaea HOM05D001062 ORTHO05D000884 1.1e-06 59.3 196 31.6
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 1.1e-06 59.3 184 30.4
COL.COLO4_35750 Corchorus olitorius HOM05D001062 ORTHO05D000884 1.4e-06 58.9 152 30.3
Migut.J01429 Erythranthe guttata HOM05D015143 ORTHO05D004696 1.4e-06 58.9 369 24.9
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 1.4e-06 58.9 206 28.6
Duzib264G0268 Durio zibethinus HOM05D001062 ORTHO05D000884 1.8e-06 58.5 195 30.8
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.8e-06 58.5 233 25.8
Cfa002899 Carpinus fangiana HOM05D001062 ORTHO05D000884 2.4e-06 58.2 192 33.3
Gohir.D04G031300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 2.4e-06 58.2 195 31.3
Gorai.012G035400 Gossypium raimondii HOM05D001062 ORTHO05D000884 2.4e-06 58.2 195 31.3
SEGI_26894 Sequoiadendron giganteum HOM05D001062 ORTHO05D000884 2.4e-06 58.2 191 28.8
CiPaw.16G018900 Carya illinoinensis HOM05D001062 ORTHO05D000884 3.2e-06 57.8 185 29.2
MBI03_g42546_MAGBIO Magnolia biondii HOM05D001062 ORTHO05D000884 3.2e-06 57.8 200 29.5
SalBow6G2608 Salvia bowleyana HOM05D050058 ORTHO05D004696 3.2e-06 57.8 124 35.5
SalBow6G5998 Salvia bowleyana HOM05D050058 ORTHO05D004696 3.2e-06 57.8 124 35.5
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 4.1e-06 57.4 357 24.4
Migut.H00697 Erythranthe guttata HOM05D001062 ORTHO05D000884 4.1e-06 57.4 183 29.5
Gohir.D02G074800 Gossypium hirsutum HOM05D001062 ORTHO05D000884 4.1e-06 57.4 197 31.5
Sc06g0003000 Simmondsia chinensis HOM05D001062 ORTHO05D000884 4.1e-06 57.4 191 27.2
CSS0019658 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 5.4e-06 57.0 178 28.1
HanXRQChr16g0510881 Helianthus annuus HOM05D001062 ORTHO05D000884 5.4e-06 57.0 165 32.7
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 7.0e-06 56.6 219 27.9
TWI79G0661 Tripterygium wilfordii HOM05D001062 ORTHO05D000884 7.0e-06 56.6 194 30.9
Cfa018388 Carpinus fangiana HOM05D001062 ORTHO05D000884 9.2e-06 56.2 245 26.5
Gohir.A05G384300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 9.2e-06 56.2 195 31.3


User provided reference genes

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