Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 1.9e-56 222.2 108 100.0
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 3.1e-35 151.8 80 93.8
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 3.4e-34 148.3 80 92.5
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 3.4e-34 148.3 80 91.2
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.7e-33 146.0 80 90.0
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 8.5e-33 143.7 80 88.8
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 1.1e-32 143.3 80 88.8
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.9e-32 142.5 89 79.8
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 2.5e-32 142.1 80 87.5
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 4.2e-32 141.4 80 87.5
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 5.5e-32 141.0 80 86.2
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 2.7e-31 138.7 80 85.0
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 3.6e-31 138.3 80 86.2
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 4.6e-31 137.9 80 85.0
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 4.6e-31 137.9 80 85.0
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 4.6e-31 137.9 80 85.0
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 4.6e-31 137.9 80 85.0
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 1.4e-30 136.3 80 86.2
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 2.3e-30 135.6 80 85.0
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 3.0e-30 135.2 80 83.8
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 3.9e-30 134.8 80 83.8
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 5.1e-30 134.4 86 83.7
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 6.7e-30 134.0 80 82.5
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 2.5e-29 132.1 80 82.5
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 2.5e-29 132.1 80 81.2
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 7.4e-29 130.6 80 81.2
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 7.4e-29 130.6 78 79.5
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 2.8e-28 128.6 78 79.5
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 6.3e-28 127.5 80 81.2
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 2.4e-27 125.6 83 81.9
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 3.1e-27 125.2 83 81.9
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 6.9e-27 124.0 83 80.7
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 6.9e-27 124.0 83 80.7
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 6.9e-27 124.0 80 78.8
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 6.9e-27 124.0 80 78.8
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 1.2e-26 123.2 84 75.0
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 1.2e-26 123.2 83 80.7
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 1.5e-26 122.9 82 74.4
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 2.0e-26 122.5 78 74.4
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 2.0e-26 122.5 84 76.2
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 2.6e-26 122.1 84 75.0
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 2.6e-26 122.1 82 79.3
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 2.6e-26 122.1 84 78.6
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 2.6e-26 122.1 80 75.0
Atru.chr13.1061 Acer truncatum HOM05D003540 ORTHO05D004012 3.4e-26 121.7 86 76.7
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 3.4e-26 121.7 85 72.9
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 5.9e-26 120.9 83 77.1
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 7.7e-26 120.6 85 72.9
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 7.7e-26 120.6 85 72.9
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 1.0e-25 120.2 84 72.6
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 1.0e-25 120.2 84 72.6
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 1.3e-25 119.8 84 73.8
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 1.7e-25 119.4 84 71.4
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 1.7e-25 119.4 80 76.2
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 1.7e-25 119.4 84 72.6
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 2.2e-25 119.0 84 71.4
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 2.2e-25 119.0 84 72.6
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 2.9e-25 118.6 80 76.2
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 2.9e-25 118.6 82 76.8
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 3.8e-25 118.2 85 70.6
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 3.8e-25 118.2 84 70.2
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 3.8e-25 118.2 83 80.7
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 3.8e-25 118.2 84 72.6
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 3.8e-25 118.2 78 73.1
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 3.8e-25 118.2 84 72.6
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 5.0e-25 117.9 82 75.6
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 8.5e-25 117.1 84 71.4
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 8.5e-25 117.1 81 76.5
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 8.5e-25 117.1 83 80.7
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 8.5e-25 117.1 81 75.3
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 8.5e-25 117.1 70 82.9
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.1e-24 116.7 80 75.0
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 1.1e-24 116.7 81 74.1
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 1.4e-24 116.3 78 73.1
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 1.4e-24 116.3 84 70.2
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 2.5e-24 115.5 83 72.3
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 9.4e-24 113.6 81 71.6
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 1.2e-23 113.2 84 69.0
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 1.2e-23 113.2 69 82.6
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 1.2e-23 113.2 68 83.8
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 1.6e-23 112.8 84 69.0
AUR62027843 Chenopodium quinoa HOM05D003540 ORTHO05D004012 2.7e-23 112.1 73 76.7
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 2.7e-23 112.1 80 70.0
BolC5t31494H Brassica oleracea HOM05D003540 ORTHO05D004012 3.6e-23 111.7 95 63.2
Glyma.04G097000 Glycine max HOM05D003540 ORTHO05D004012 3.6e-23 111.7 81 74.1
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 4.7e-23 111.3 78 70.5
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 6.1e-23 110.9 84 67.9
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 6.1e-23 110.9 84 67.9
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 6.1e-23 110.9 78 70.5
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 6.1e-23 110.9 80 71.2
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 1.4e-22 109.8 68 79.4
Ca_05384_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 1.4e-22 109.8 83 68.7
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 1.8e-22 109.4 81 71.6
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 3.0e-22 108.6 83 69.9
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 3.9e-22 108.2 70 78.6
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 5.1e-22 107.8 81 70.4
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 5.1e-22 107.8 81 70.4
AUR62019000 Chenopodium quinoa HOM05D003540 ORTHO05D004012 6.7e-22 107.5 68 77.9
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 6.7e-22 107.5 83 68.7
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 6.7e-22 107.5 64 82.8
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 8.8e-22 107.1 81 69.1
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 1.1e-21 106.7 68 76.5
CsaV3_3G047800 Cucumis sativus L. HOM05D003540 ORTHO05D004012 1.5e-21 106.3 84 67.9
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 1.5e-21 106.3 81 70.4
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 1.5e-21 106.3 80 72.5
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 1.5e-21 106.3 70 77.1
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 2.0e-21 105.9 80 71.2
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 2.6e-21 105.5 70 77.1
Ca_16024_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 4.4e-21 104.8 83 71.1
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 4.4e-21 104.8 68 76.5
Nitab4.5_0007681g0020 Nicotiana tabacum HOM05D003540 ORTHO05D004012 4.4e-21 104.8 61 82.0
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 5.7e-21 104.4 81 66.7
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 5.7e-21 104.4 81 66.7
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 5.7e-21 104.4 67 76.1
Atru.chr3.3368 Acer truncatum HOM05D003185 ORTHO05D007711 7.4e-21 104.0 80 71.2
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 7.4e-21 104.0 81 66.7
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 1.3e-20 103.2 68 72.1
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.3e-20 103.2 67 73.1
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 1.7e-20 102.8 81 66.7
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.2e-20 102.4 70 74.3
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.2e-20 102.4 70 74.3
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 2.8e-20 102.1 67 73.1
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 3.7e-20 101.7 69 73.9
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 3.7e-20 101.7 81 65.4
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 4.8e-20 101.3 81 64.2
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 4.8e-20 101.3 68 69.1
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 6.3e-20 100.9 70 71.4
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 8.2e-20 100.5 65 83.1
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 8.2e-20 100.5 83 66.3
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 8.2e-20 100.5 80 72.5
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 1.1e-19 100.1 95 61.1
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 1.4e-19 99.8 63 76.2
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 1.4e-19 99.8 81 65.4
ATR0736G080 Amborella trichopoda HOM05D003540 ORTHO05D004012 1.8e-19 99.4 93 59.1
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.8e-19 99.4 67 70.1
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 1.8e-19 99.4 67 70.1
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 1.8e-19 99.4 82 68.3
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 2.4e-19 99.0 70 65.7
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 3.1e-19 98.6 63 76.2
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.1e-19 98.6 67 70.1
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 3.1e-19 98.6 61 77.0
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 9.1e-19 97.1 75 70.7
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 1.2e-18 96.7 78 67.9
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 1.5e-18 96.3 81 65.4
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 1.5e-18 96.3 82 65.9
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 2.0e-18 95.9 70 72.9
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 2.6e-18 95.5 67 67.2
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 5.9e-18 94.4 61 77.0
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 1.0e-17 93.6 74 68.9
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 1.3e-17 93.2 60 73.3
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 3.2e-16 88.6 70 65.7
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 3.2e-16 88.6 70 67.1
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 3.2e-16 88.6 69 65.2
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 5.5e-16 87.8 70 67.1
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 9.4e-16 87.0 64 71.9
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 9.4e-16 87.0 70 64.3
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 1.2e-15 86.7 67 64.2
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.6e-15 86.3 67 68.7
Nitab4.5_0001078g0070 Nicotiana tabacum HOM05D003540 ORTHO05D004012 2.7e-15 85.5 79 57.0
SEGI_15699 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 3.6e-15 85.1 71 56.3
Hund16878 Selenicereus undatus HOM05D003540 ORTHO05D004012 4.7e-15 84.7 87 58.6
vmacro21941 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 4.7e-15 84.7 80 55.0
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 6.1e-15 84.3 70 60.0
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 1.0e-14 83.6 66 68.2
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.4e-14 83.2 64 64.1
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 5.2e-14 81.3 69 60.9
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 1.1e-13 80.1 56 69.6
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 1.1e-13 80.1 70 61.4
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 3.3e-13 78.6 56 69.6
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 3.3e-13 78.6 56 69.6
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 3.3e-13 78.6 56 69.6
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 9.7e-13 77.0 56 67.9
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 2.2e-12 75.9 63 65.1
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 4.8e-12 74.7 69 52.2
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 6.3e-12 74.3 71 56.3
Oeu023447.1 Olea europaea HOM05D003540 ORTHO05D004012 1.8e-11 72.8 52 69.2
Cc04_g11820 Coffea canephora HOM05D003540 ORTHO05D004012 1.6e-10 69.7 80 52.5
Haze_15046 Corylus avellana HOM05D003540 ORTHO05D004012 5.9e-10 67.8 42 76.2
Sabra17G0067100 Salix brachista HOM05D003540 ORTHO05D004012 1.7e-09 66.2 91 47.3
TWI56G0839 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.7e-09 66.2 40 77.5
SMO141G0171 Selaginella moellendorffii HOM05D003540 ORTHO05D004012 5.0e-09 64.7 49 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 2.5e-08 62.4 60 55.0
Mapoly0006s0109 Marchantia polymorpha HOM05D003540 ORTHO05D004012 1.6e-07 59.7 62 46.8
Pp3c7_10130 Physcomitrium patens HOM05D003540 ORTHO05D004012 3.0e-06 55.5 51 51.0
Pp3c6_21020 Physcomitrium patens HOM05D003540 ORTHO05D004012 8.8e-06 53.9 52 48.1


User provided reference genes

Program Settings