Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42623 Davidia involucrata HOM05D000244 ORTHO05D004919 1.1e-134 483.4 254 100.0
Dinv44851 Davidia involucrata HOM05D000244 ORTHO05D004919 9.2e-30 134.8 114 75.4
CSS0028409 Camellia sinensis var. sinensis HOM05D000244 ORTHO05D004919 8.6e-28 128.3 111 62.2
Hma1.2p1_0125F.1_g058970 Hydrangea macrophylla HOM05D000244 ORTHO05D004919 4.9e-23 112.5 116 58.6
CSS0024913 Camellia sinensis var. sinensis HOM05D000244 ORTHO05D004919 2.3e-20 103.6 115 64.3
Nitab4.5_0008771g0010 Nicotiana tabacum HOM05D000244 ORTHO05D004919 1.6e-18 97.4 126 56.3
Nitab4.5_0000131g0370 Nicotiana tabacum HOM05D000244 ORTHO05D004919 2.1e-18 97.1 124 55.6
Cc10_g15800 Coffea canephora HOM05D000244 ORTHO05D004919 3.6e-18 96.3 120 55.0
Cfa013688 Carpinus fangiana HOM05D000244 ORTHO05D004919 1.4e-17 94.4 138 47.1
Lj4P736T15 Lonicera japonica HOM05D000244 ORTHO05D004919 9.0e-17 91.7 112 49.1
CiPaw.08G054900 Carya illinoinensis HOM05D000244 ORTHO05D004919 4.5e-16 89.4 132 53.0
COL.COLO4_35218 Corchorus olitorius HOM05D000244 ORTHO05D004919 5.8e-16 89.0 125 49.6
Potri.002G105000 Populus trichocarpa HOM05D000244 ORTHO05D004919 9.9e-16 88.2 126 50.8
Thecc.08G069500 Theobroma cacao HOM05D000244 ORTHO05D004919 9.9e-16 88.2 126 57.1
Psat5g046320 Pisum sativum HOM05D000244 ORTHO05D004919 1.3e-15 87.8 116 52.6
VMungo1076G0001 Vigna mungo HOM05D000244 ORTHO05D004919 1.3e-15 87.8 98 52.0
Glyma.02G213500 Glycine max HOM05D000244 ORTHO05D004919 1.7e-15 87.4 98 55.1
Potri.005G156700 Populus trichocarpa HOM05D000244 ORTHO05D004919 1.7e-15 87.4 120 50.8
TPR.G26048 Trifolium pratense HOM05D000244 ORTHO05D004919 2.2e-15 87.0 123 47.2
Solyc04g076220.3 Solanum lycopersicum HOM05D000244 ORTHO05D004919 2.9e-15 86.7 76 64.5
CANSAT25G2988 Cannabis sativa HOM05D000244 ORTHO05D004919 3.8e-15 86.3 71 67.6
Phvul.008G181100 Phaseolus vulgaris HOM05D000244 ORTHO05D004919 3.8e-15 86.3 98 51.0
CAN.G475.42 Capsicum annuum HOM05D000244 ORTHO05D004919 4.9e-15 85.9 153 43.8
Sopen00g009810 Solanum pennellii HOM05D000244 ORTHO05D004919 8.4e-15 85.1 81 70.4
Actinidia30823 Actinidia chinensis HOM05D000244 ORTHO05D004919 1.4e-14 84.3 112 47.3
Ca_15997_v3 Cicer arietinum L. HOM05D000244 ORTHO05D004919 1.4e-14 84.3 126 46.0
RcHm_v2.0_Chr7g0236871 Rosa chinensis HOM05D000244 ORTHO05D004919 1.4e-14 84.3 177 40.1
Duzib116G0561 Durio zibethinus HOM05D000244 ORTHO05D004919 1.9e-14 84.0 118 45.8
MD08G1196300 Malus domestica HOM05D000244 ORTHO05D004919 1.9e-14 84.0 132 54.5
MD15G1384100 Malus domestica HOM05D000244 ORTHO05D004919 3.2e-14 83.2 130 49.2
Duzib093G0476 Durio zibethinus HOM05D000244 ORTHO05D004919 4.2e-14 82.8 120 45.8
CiPaw.07G166600 Carya illinoinensis HOM05D000244 ORTHO05D004919 5.4e-14 82.4 134 45.5
Nn1g05541 Nelumbo nucifera HOM05D000244 ORTHO05D004919 1.2e-13 81.3 131 48.1
Sabra05G0120300 Salix brachista HOM05D000244 ORTHO05D004919 1.6e-13 80.9 87 55.2
LjContig00408g0000570 Lotus japonicus HOM05D000244 ORTHO05D004919 3.5e-13 79.7 96 50.0
TWI36G1033 Tripterygium wilfordii HOM05D000244 ORTHO05D004919 4.6e-13 79.3 114 46.5
TPR.G16028 Trifolium pratense HOM05D000244 ORTHO05D004919 6.0e-13 79.0 88 51.1
TAR381G0576 Trochodendron aralioides HOM05D000244 ORTHO05D004919 6.0e-13 79.0 112 45.5
Ca_05426_v3 Cicer arietinum L. HOM05D000244 ORTHO05D004919 7.9e-13 78.6 71 57.7
Lalb_Chr11g0065051 Lupinus albus HOM05D000244 ORTHO05D004919 1.3e-12 77.8 114 47.4
Medtr3g100470 Medicago truncatula HOM05D000244 ORTHO05D004919 1.3e-12 77.8 113 46.0
MBI06_g36040_MAGBIO Magnolia biondii HOM05D000244 ORTHO05D004919 1.8e-12 77.4 66 62.1
Lj4A89T40 Lonicera japonica HOM05D000244 ORTHO05D004919 2.3e-12 77.0 115 42.6
TAR376G0027 Trochodendron aralioides HOM05D000244 ORTHO05D004919 2.3e-12 77.0 99 48.5
FvH4_5g35490 Fragaria vesca HOM05D000244 ORTHO05D004919 5.1e-12 75.9 128 48.4
FAN18G1982 Fragaria x ananassa HOM05D000244 ORTHO05D004919 5.1e-12 75.9 128 48.4
Psat2g066000 Pisum sativum HOM05D000244 ORTHO05D004919 5.1e-12 75.9 88 52.3
FAN13G0285 Fragaria x ananassa HOM05D000244 ORTHO05D004919 6.7e-12 75.5 126 48.4
Gohir.A05G220300 Gossypium hirsutum HOM05D000244 ORTHO05D004919 6.7e-12 75.5 132 42.4
Gohir.D05G223100 Gossypium hirsutum HOM05D000244 ORTHO05D004919 8.7e-12 75.1 130 46.2
Manes.18G059800 Manihot esculenta HOM05D000244 ORTHO05D004919 1.1e-11 74.7 136 42.6
Phvul.009G144300 Phaseolus vulgaris HOM05D000244 ORTHO05D004919 1.1e-11 74.7 112 48.2
TAR628G0674 Trochodendron aralioides HOM05D000244 ORTHO05D004919 1.1e-11 74.7 102 50.0
Prupe.1G530300 Prunus persica HOM05D000244 ORTHO05D004919 1.9e-11 73.9 77 57.1
Duzib041G0591 Durio zibethinus HOM05D000244 ORTHO05D004919 2.5e-11 73.6 119 42.9
Glyma.06G093400 Glycine max HOM05D000244 ORTHO05D004919 3.3e-11 73.2 113 45.1
Manes.02G145600 Manihot esculenta HOM05D000244 ORTHO05D004919 3.3e-11 73.2 134 50.0
arahy.Tifrunner.gnm1.ann1.6X9KLT Arachis hypogaea HOM05D000244 ORTHO05D004919 4.3e-11 72.8 117 48.7
Gorai.009G230300 Gossypium raimondii HOM05D000244 ORTHO05D004919 5.6e-11 72.4 132 41.7
Lsat_1_v5_gn_9_75400 Lactuca sativa HOM05D000244 ORTHO05D004919 5.6e-11 72.4 116 45.7
Nn5g29909 Nelumbo nucifera HOM05D000244 ORTHO05D004919 5.6e-11 72.4 123 44.7
FAN08G2285 Fragaria x ananassa HOM05D000244 ORTHO05D004919 7.4e-11 72.0 127 52.0
ECA232G4764 Erigeron canadensis HOM05D000244 ORTHO05D004919 9.6e-11 71.6 98 49.0
Medtr5g066020 Medicago truncatula HOM05D000244 ORTHO05D004919 9.6e-11 71.6 78 55.1
TWI56G0440 Tripterygium wilfordii HOM05D000244 ORTHO05D004919 9.6e-11 71.6 115 44.3
HanXRQChr10g0303951 Helianthus annuus HOM05D000244 ORTHO05D004919 1.3e-10 71.2 71 56.3
Haze_22329 Corylus avellana HOM05D000244 ORTHO05D004919 1.6e-10 70.9 140 41.4
Glyma.04G091600 Glycine max HOM05D000244 ORTHO05D004919 1.6e-10 70.9 112 42.9
Nn2g14819 Nelumbo nucifera HOM05D000244 ORTHO05D000179 1.6e-10 70.9 76 51.3
Cpa.g.sc21.4 Carica papaya HOM05D000244 ORTHO05D004919 2.1e-10 70.5 103 55.3
FAN04G1436 Fragaria x ananassa HOM05D000244 ORTHO05D004919 2.8e-10 70.1 136 42.6
Peaxi162Scf00979g00022 Petunia axillaris HOM05D000244 ORTHO05D004919 2.8e-10 70.1 122 42.6
AL8G23630 Arabidopsis lyrata HOM05D000244 ORTHO05D004919 3.6e-10 69.7 112 46.4
CDE03G0340 Ceratophyllum demersum HOM05D000244 ORTHO05D004919 3.6e-10 69.7 67 50.7
MSTRG.22172 Avicennia marina HOM05D000244 ORTHO05D004919 4.8e-10 69.3 68 60.3
CDE06G0349 Ceratophyllum demersum HOM05D000344 ORTHO05D000934 4.8e-10 69.3 67 64.2
VMungo1309G2380 Vigna mungo HOM05D000244 ORTHO05D004919 6.2e-10 68.9 64 64.1
Atru.chr13.1028 Acer truncatum HOM05D000244 ORTHO05D004919 8.1e-10 68.6 35 88.6
Carub.0008s0958 Capsella rubella HOM05D000244 ORTHO05D004919 8.1e-10 68.6 111 45.0
Ciclev10001847m.g Citrus clementina HOM05D000244 ORTHO05D004919 8.1e-10 68.6 34 91.2
THA.LOC104803426 Tarenaya hassleriana HOM05D000244 ORTHO05D004919 1.4e-09 67.8 34 85.3
Gohir.A02G078700 Gossypium hirsutum HOM05D000244 ORTHO05D004919 1.8e-09 67.4 111 42.3
QL09p017582 Quercus lobata HOM05D000244 ORTHO05D004919 1.8e-09 67.4 37 81.1
PGSC0003DMG400009365 Solanum tuberosum HOM05D000244 ORTHO05D004919 1.8e-09 67.4 33 93.9
Gohir.D02G085900 Gossypium hirsutum HOM05D000244 ORTHO05D004919 3.1e-09 66.6 111 42.3
CARHR259140 Cardamine hirsuta HOM05D000244 ORTHO05D004919 4.0e-09 66.2 33 90.9
Gorai.005G096700 Gossypium raimondii HOM05D000244 ORTHO05D004919 5.3e-09 65.9 111 42.3
Nn7g36703 Nelumbo nucifera HOM05D000244 ORTHO05D004919 6.9e-09 65.5 84 44.0
Aqoxy5G01313 Aquilegia oxysepala HOM05D000244 ORTHO05D004919 9.0e-09 65.1 33 87.9
Migut.N02869 Erythranthe guttata HOM05D000244 ORTHO05D004919 9.0e-09 65.1 74 55.4
RcHm_v2.0_Chr5g0025921 Rosa chinensis HOM05D000244 ORTHO05D045292 9.0e-09 65.1 120 40.8
AT5G49700 Arabidopsis thaliana HOM05D000244 ORTHO05D004919 1.2e-08 64.7 33 84.8
Lalb_Chr04g0252891 Lupinus albus HOM05D000244 ORTHO05D004919 1.2e-08 64.7 98 44.9
Sed0019274 Sechium edule HOM05D000244 ORTHO05D004919 1.2e-08 64.7 33 84.8
Lalb_Chr17g0344481 Lupinus albus HOM05D000244 ORTHO05D004919 1.5e-08 64.3 101 42.6
Sabra02G0082400 Salix brachista HOM05D000244 ORTHO05D004919 1.5e-08 64.3 33 87.9
Gohir.D06G032000 Gossypium hirsutum HOM05D000244 ORTHO05D004919 2.0e-08 63.9 116 39.7
Gorai.010G035300 Gossypium raimondii HOM05D000244 ORTHO05D004919 2.0e-08 63.9 116 39.7
PGR031G2842 Punica granatum HOM05D000244 ORTHO05D004919 2.0e-08 63.9 172 33.7
THA.LOC104824569 Tarenaya hassleriana HOM05D000244 ORTHO05D004919 2.0e-08 63.9 120 40.8
Glyma.14G181200 Glycine max HOM05D000244 ORTHO05D004919 2.6e-08 63.5 98 40.8
PGR042G1021 Punica granatum HOM05D000244 ORTHO05D004919 2.6e-08 63.5 112 41.1
Sp6g10970 Schrenkiella parvula HOM05D000244 ORTHO05D004919 2.6e-08 63.5 112 39.3
ClCG08G011720 Citrullus lanatus HOM05D000244 ORTHO05D004919 4.5e-08 62.8 33 84.8
Actinidia19636 Actinidia chinensis HOM05D000244 ORTHO05D004919 5.8e-08 62.4 32 90.6
EL10Ac1g01065 Beta vulgaris HOM05D000244 ORTHO05D004919 5.8e-08 62.4 35 82.9
MELO3C011096.2 Cucumis melo HOM05D000244 ORTHO05D004919 5.8e-08 62.4 33 81.8
CsaV3_2G030340 Cucumis sativus L. HOM05D000244 ORTHO05D004919 5.8e-08 62.4 33 81.8
TWI12G1174 Tripterygium wilfordii HOM05D000244 ORTHO05D004919 5.8e-08 62.4 37 75.7
Aa31sc195G10 Aethionema arabicum HOM05D000244 ORTHO05D004919 7.6e-08 62.0 114 43.0
BcaB01g02948 Brassica carinata HOM05D000244 ORTHO05D004919 9.9e-08 61.6 33 81.8
BcaC01g04851 Brassica carinata HOM05D000244 ORTHO05D004919 9.9e-08 61.6 33 81.8
A03p27490 Brassica napus HOM05D000244 ORTHO05D004919 9.9e-08 61.6 33 81.8
C03p33150 Brassica napus HOM05D000244 ORTHO05D004919 9.9e-08 61.6 33 81.8
BolC3t15640H Brassica oleracea HOM05D000244 ORTHO05D004919 9.9e-08 61.6 33 81.8
BraA03t11962Z Brassica rapa HOM05D000244 ORTHO05D004919 9.9e-08 61.6 33 81.8
SGA_v2.0_scaffold28G11895 Striga asiatica HOM05D000244 ORTHO05D004919 9.9e-08 61.6 115 39.1
DCAR_020018 Daucus carota HOM05D000244 ORTHO05D004919 1.7e-07 60.8 115 37.4
Gohir.A06G032612 Gossypium hirsutum HOM05D000244 ORTHO05D004919 1.7e-07 60.8 116 38.8
Lsat_1_v5_gn_8_82480 Lactuca sativa HOM05D000244 ORTHO05D004919 1.7e-07 60.8 71 50.7
vmacro04657 Vaccinium macrocarpon HOM05D000244 ORTHO05D004919 1.7e-07 60.8 94 44.7
MSTRG.24436 Avicennia marina HOM05D000244 ORTHO05D004919 2.2e-07 60.5 110 40.9
Oeu020241.1 Olea europaea HOM05D000244 ORTHO05D004919 2.2e-07 60.5 62 54.8
PSO017G6431 Papaver somniferum HOM05D000244 ORTHO05D004919 2.2e-07 60.5 31 87.1
PSO170G2434 Papaver somniferum HOM05D000244 ORTHO05D004919 2.2e-07 60.5 31 87.1
DCAR_009569 Daucus carota HOM05D000244 ORTHO05D004919 2.9e-07 60.1 116 37.1
Lalb_Chr10g0102721 Lupinus albus HOM05D000244 ORTHO05D004919 2.9e-07 60.1 99 43.4
EL10Ac1g00909 Beta vulgaris HOM05D000244 ORTHO05D000179 4.9e-07 59.3 68 48.5
Lsat_1_v5_gn_6_106180 Lactuca sativa HOM05D000244 ORTHO05D004919 4.9e-07 59.3 31 80.6
Sc23g0000640 Simmondsia chinensis HOM05D000244 ORTHO05D004919 6.4e-07 58.9 33 78.8
Zm00001eb038860 Zea mays HOM05D000244 ORTHO05D000179 6.4e-07 58.9 59 50.8
Zm00001eb315380 Zea mays HOM05D000244 ORTHO05D004919 6.4e-07 58.9 62 50.0
unitig_744.g24106 Utricularia gibba HOM05D000244 ORTHO05D004919 8.4e-07 58.5 32 90.6
SGA_v2.0_scaffold101G29827 Striga asiatica HOM05D000244 ORTHO05D000179 1.1e-06 58.2 32 81.2
Oeu049766.1 Olea europaea HOM05D000244 ORTHO05D004919 1.4e-06 57.8 120 46.7
Oeu049767.1 Olea europaea HOM05D000244 ORTHO05D004919 1.4e-06 57.8 120 46.7
SGA_v2.0_scaffold84G26475 Striga asiatica HOM05D000244 ORTHO05D004919 1.4e-06 57.8 123 40.7
MSTRG.9917 Avicennia marina HOM05D000244 ORTHO05D000179 1.9e-06 57.4 32 78.1
Lalb_Chr08g0242471 Lupinus albus HOM05D000244 ORTHO05D004919 1.9e-06 57.4 33 81.8
SHI00679 Sapria himalayana HOM05D000244 ORTHO05D000179 1.9e-06 57.4 36 72.2
CAN.G806.10 Capsicum annuum HOM05D000244 ORTHO05D004919 2.4e-06 57.0 117 48.7
ClCG11G014540 Citrullus lanatus HOM05D000244 ORTHO05D004919 2.4e-06 57.0 60 51.7
Os09g0464300 Oryza sativa ssp. japonica HOM05D000244 ORTHO05D004919 2.4e-06 57.0 63 50.8
unitig_744.g24571 Utricularia gibba HOM05D000244 ORTHO05D000179 2.4e-06 57.0 38 68.4
Aqoxy6G01448 Aquilegia oxysepala HOM05D000244 ORTHO05D004919 3.2e-06 56.6 38 71.1
TAR633G1982 Trochodendron aralioides HOM05D000244 ORTHO05D000179 3.2e-06 56.6 75 46.7
Dinv29890 Davidia involucrata HOM05D000244 ORTHO05D000179 4.2e-06 56.2 28 78.6
Dinv44655 Davidia involucrata HOM05D000816 ORTHO05D005265 4.2e-06 56.2 28 82.1
Duzib106G1582 Durio zibethinus HOM05D000244 ORTHO05D000179 4.2e-06 56.2 59 49.2
Manes.01G178900 Manihot esculenta HOM05D000244 ORTHO05D000179 4.2e-06 56.2 37 64.9
QL06p016573 Quercus lobata HOM05D000244 ORTHO05D000179 4.2e-06 56.2 63 50.8
SEGI_28224 Sequoiadendron giganteum HOM05D000244 ORTHO05D000179 4.2e-06 56.2 29 79.3
MSTRG.24692 Avicennia marina HOM05D000244 ORTHO05D000179 5.5e-06 55.8 32 75.0
MBI01_g22975_MAGBIO Magnolia biondii HOM05D000244 ORTHO05D000179 5.5e-06 55.8 72 45.8
unitig_21.g20173 Utricularia gibba HOM05D000244 ORTHO05D000179 5.5e-06 55.8 38 65.8
Zm00001eb175780 Zea mays HOM05D000244 ORTHO05D000179 5.5e-06 55.8 32 71.9
Cpa.g.c41226 Carica papaya HOM05D000244 ORTHO05D000179 7.1e-06 55.5 40 62.5
Ciclev10005603m.g Citrus clementina HOM05D000244 ORTHO05D000179 7.1e-06 55.5 41 65.9
Cc02_g09050 Coffea canephora HOM05D000244 ORTHO05D000179 7.1e-06 55.5 32 71.9
Glyma.10G008400 Glycine max HOM05D000244 ORTHO05D000179 7.1e-06 55.5 47 63.8
Glyma.20G087200 Glycine max HOM05D000244 ORTHO05D000179 7.1e-06 55.5 41 65.9
CSS0022210 Camellia sinensis var. sinensis HOM05D000244 ORTHO05D000179 9.3e-06 55.1 40 62.5
CSS0023327 Camellia sinensis var. sinensis HOM05D000244 ORTHO05D000179 9.3e-06 55.1 40 62.5
CiPaw.07G077900 Carya illinoinensis HOM05D000244 ORTHO05D000179 9.3e-06 55.1 36 66.7
ClCG02G016940 Citrullus lanatus HOM05D000244 ORTHO05D000179 9.3e-06 55.1 60 46.7
Haze_04462 Corylus avellana HOM05D000244 ORTHO05D000179 9.3e-06 55.1 32 71.9
Dinv14629 Davidia involucrata HOM05D000244 ORTHO05D000179 9.3e-06 55.1 32 71.9
Duzib212G0350 Durio zibethinus HOM05D000244 ORTHO05D000179 9.3e-06 55.1 65 46.2
Eucgr.H04257 Eucalyptus grandis HOM05D000244 ORTHO05D000179 9.3e-06 55.1 32 71.9
Lj2C39T17 Lonicera japonica HOM05D000244 ORTHO05D000179 9.3e-06 55.1 36 66.7
MD04G1228100 Malus domestica HOM05D000244 ORTHO05D000179 9.3e-06 55.1 32 71.9
MD12G1245400 Malus domestica HOM05D000244 ORTHO05D000179 9.3e-06 55.1 32 71.9
Phvul.007G271800 Phaseolus vulgaris HOM05D000244 ORTHO05D000179 9.3e-06 55.1 47 63.8
Prupe.6G348200 Prunus persica HOM05D000244 ORTHO05D000179 9.3e-06 55.1 32 71.9
QL03p032077 Quercus lobata HOM05D000244 ORTHO05D000179 9.3e-06 55.1 32 71.9
THA.LOC104827289 Tarenaya hassleriana HOM05D000244 ORTHO05D000179 9.3e-06 55.1 32 71.9
Thecc.05G276400 Theobroma cacao HOM05D000244 ORTHO05D000179 9.3e-06 55.1 59 49.2
GSVIVG01036210001 Vitis vinifera HOM05D000244 ORTHO05D000179 9.3e-06 55.1 32 71.9


User provided reference genes

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