Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42595 Davidia involucrata HOM05D017516 ORTHO05D019582 3.0e-157 558.5 298 100.0
GSVIVG01009204001 Vitis vinifera HOM05D017516 ORTHO05D019582 3.0e-104 382.5 303 69.0
TAR256G0009 Trochodendron aralioides HOM05D017516 ORTHO05D019582 3.7e-94 349.0 297 67.3
MBI16_g27899_MAGBIO Magnolia biondii HOM05D017516 ORTHO05D019582 4.2e-90 335.5 305 65.6
ATR0767G216 Amborella trichopoda HOM05D017516 ORTHO05D019582 8.7e-80 301.2 305 59.7
CSS0031923 Camellia sinensis var. sinensis HOM05D017516 ORTHO05D019582 6.9e-69 265.0 207 67.1
Nn5g29826 Nelumbo nucifera HOM05D017516 ORTHO05D019582 4.5e-52 209.1 145 75.9
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 1.8e-24 117.5 208 38.0
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 3.7e-22 109.8 247 34.0
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 3.6e-17 93.2 245 29.8
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 2.6e-15 87.0 199 36.7
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 1.3e-14 84.7 199 35.7
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 2.9e-14 83.6 247 30.8
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 8.3e-14 82.0 208 32.7
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.6e-12 77.8 203 31.5
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 2.7e-12 77.0 200 36.5
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 4.6e-12 76.3 203 31.0
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 6.0e-12 75.9 206 32.0
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 6.0e-12 75.9 202 31.2
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 7.8e-12 75.5 206 34.0
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 2.3e-11 73.9 206 32.0
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 3.0e-11 73.6 222 30.2
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 8.6e-11 72.0 198 32.3
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 8.6e-11 72.0 203 30.0
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 1.9e-10 70.9 235 28.5
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 2.5e-10 70.5 204 31.9
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 3.3e-10 70.1 207 33.3
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 3.3e-10 70.1 203 32.5
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 9.5e-10 68.6 203 34.5
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 2.1e-09 67.4 204 32.8
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 2.1e-09 67.4 203 31.5
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 4.7e-09 66.2 209 32.1
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 4.7e-09 66.2 197 26.9
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 4.7e-09 66.2 197 26.9
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 8.1e-09 65.5 204 30.4
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 8.1e-09 65.5 202 30.2
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 8.1e-09 65.5 208 34.1
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 8.1e-09 65.5 203 30.0
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 8.1e-09 65.5 198 30.8
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 1.1e-08 65.1 203 30.0
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 1.8e-08 64.3 203 31.5
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 2.3e-08 63.9 207 29.0
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.3e-08 63.9 208 30.8
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 2.3e-08 63.9 203 33.5
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 2.3e-08 63.9 197 27.9
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 2.3e-08 63.9 204 31.4
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 2.3e-08 63.9 208 31.7
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 3.1e-08 63.5 201 32.3
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 3.1e-08 63.5 206 29.6
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 4.0e-08 63.2 204 33.3
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 4.0e-08 63.2 200 29.0
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 5.2e-08 62.8 197 27.9
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 6.8e-08 62.4 204 28.9
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 8.9e-08 62.0 156 28.2
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 8.9e-08 62.0 206 30.6
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 8.9e-08 62.0 201 30.3
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 1.2e-07 61.6 201 30.8
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.2e-07 61.6 200 33.0
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 1.2e-07 61.6 202 30.7
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 1.2e-07 61.6 206 28.6
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.2e-07 61.6 207 30.0
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 1.5e-07 61.2 201 31.3
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 1.5e-07 61.2 201 29.4
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 1.5e-07 61.2 203 30.5
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 1.5e-07 61.2 202 29.2
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 2.0e-07 60.8 203 33.0
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 2.0e-07 60.8 213 29.6
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 2.0e-07 60.8 205 31.7
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 2.0e-07 60.8 200 30.0
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 2.0e-07 60.8 205 29.3
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 2.6e-07 60.5 203 28.6
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 2.6e-07 60.5 205 30.2
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 2.6e-07 60.5 205 29.3
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 3.4e-07 60.1 205 31.2
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.4e-07 60.1 205 29.8
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 3.4e-07 60.1 200 33.0
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 4.4e-07 59.7 201 30.8
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 4.4e-07 59.7 205 30.2
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 5.8e-07 59.3 158 30.4
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 5.8e-07 59.3 202 29.2
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 5.8e-07 59.3 205 29.8
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 5.8e-07 59.3 205 29.8
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 7.6e-07 58.9 201 29.4
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 7.6e-07 58.9 206 27.7
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 7.6e-07 58.9 200 31.5
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 7.6e-07 58.9 200 30.0
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 9.9e-07 58.5 208 29.3
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 9.9e-07 58.5 199 32.2
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 9.9e-07 58.5 200 33.0
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 9.9e-07 58.5 200 33.0
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 1.3e-06 58.2 207 28.0
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 1.3e-06 58.2 205 30.2
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 1.7e-06 57.8 203 29.1
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 1.7e-06 57.8 203 29.1
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 1.7e-06 57.8 203 29.1
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 1.7e-06 57.8 205 28.3
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 2.2e-06 57.4 203 30.5
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 2.2e-06 57.4 203 30.5
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 2.2e-06 57.4 202 27.2
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 2.9e-06 57.0 208 27.4
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.9e-06 57.0 199 31.2
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.9e-06 57.0 199 31.2
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 2.9e-06 57.0 168 32.7
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 2.9e-06 57.0 211 31.8
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 3.8e-06 56.6 207 30.4
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 3.8e-06 56.6 199 30.2
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 3.8e-06 56.6 199 30.2
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 3.8e-06 56.6 172 30.8
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 3.8e-06 56.6 206 30.1
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 4.9e-06 56.2 199 30.2
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 4.9e-06 56.2 204 31.9
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 6.4e-06 55.8 197 29.4
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 6.4e-06 55.8 200 31.5
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 6.4e-06 55.8 199 31.2
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 6.4e-06 55.8 205 31.2
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 6.4e-06 55.8 202 26.7
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 6.4e-06 55.8 203 29.1
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 6.4e-06 55.8 203 29.1
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 8.4e-06 55.5 209 28.2
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 8.4e-06 55.5 209 27.8
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 8.4e-06 55.5 201 29.4


User provided reference genes

Program Settings