Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 6.3e-196 687.2 333 100.0
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 5.3e-118 428.3 286 78.3
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 2.5e-91 339.7 352 58.0
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 1.0e-84 317.8 225 73.3
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 2.3e-81 306.6 334 53.0
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 3.4e-80 302.8 193 74.6
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 7.5e-80 301.6 283 56.2
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 7.5e-80 301.6 216 72.2
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 9.8e-80 301.2 283 55.8
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 2.8e-79 299.7 277 58.8
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 1.8e-78 297.0 238 66.0
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 3.1e-78 296.2 214 68.7
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 7.0e-78 295.0 292 55.1
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 9.1e-78 294.7 217 68.2
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.0e-77 293.5 271 56.8
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 2.7e-77 293.1 307 53.4
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 4.5e-77 292.4 271 57.2
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 4.5e-77 292.4 187 75.9
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 7.7e-77 291.6 193 72.0
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 7.7e-77 291.6 191 74.9
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.7e-76 290.4 193 72.5
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 2.9e-76 289.7 372 49.7
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 3.8e-76 289.3 150 88.7
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 6.6e-76 288.5 244 61.1
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.9e-75 287.0 239 62.8
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 3.3e-75 286.2 240 62.5
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 5.5e-75 285.4 243 63.8
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 1.6e-74 283.9 269 56.5
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.6e-74 283.9 214 65.0
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 3.6e-74 282.7 244 60.2
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 3.6e-74 282.7 258 59.7
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 8.0e-74 281.6 271 56.8
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 2.3e-73 280.0 215 64.2
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 4.0e-73 279.3 201 67.7
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.2e-72 277.7 245 59.6
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 1.5e-72 277.3 178 75.3
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 3.4e-72 276.2 198 69.2
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 3.4e-72 276.2 198 72.2
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 4.4e-72 275.8 267 54.7
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 4.4e-72 275.8 222 63.1
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 7.5e-72 275.0 288 51.4
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 9.8e-72 274.6 181 74.0
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 9.8e-72 274.6 313 51.8
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 1.7e-71 273.9 160 81.9
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 4.9e-71 272.3 212 65.6
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 8.3e-71 271.6 192 70.3
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 3.2e-70 269.6 190 70.0
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 5.4e-70 268.9 263 56.3
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 1.2e-69 267.7 240 59.2
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 2.7e-69 266.5 191 69.6
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 5.9e-69 265.4 212 61.3
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 7.8e-69 265.0 224 61.6
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 7.8e-69 265.0 275 50.9
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 1.3e-68 264.2 205 63.9
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 3.9e-68 262.7 154 77.3
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 5.0e-68 262.3 219 62.1
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 6.6e-68 261.9 216 64.4
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 8.6e-68 261.5 220 62.3
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 8.6e-68 261.5 147 82.3
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 8.6e-68 261.5 147 82.3
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 1.5e-67 260.8 218 62.4
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 1.5e-67 260.8 168 75.6
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 1.9e-67 260.4 168 75.0
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 3.3e-67 259.6 221 62.9
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 4.3e-67 259.2 148 82.4
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 4.3e-67 259.2 180 70.6
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 5.6e-67 258.8 204 66.2
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 9.5e-67 258.1 168 74.4
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 9.5e-67 258.1 168 74.4
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 9.5e-67 258.1 218 61.0
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.2e-66 257.7 165 73.3
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.1e-66 256.9 168 74.4
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 3.6e-66 256.1 223 60.5
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 4.7e-66 255.8 212 63.2
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 6.1e-66 255.4 218 60.6
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 8.0e-66 255.0 224 58.0
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 8.0e-66 255.0 168 73.8
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 4.0e-65 252.7 228 58.8
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 5.2e-65 252.3 147 79.6
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 6.8e-65 251.9 225 58.7
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 1.2e-64 251.1 146 78.8
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.2e-64 251.1 165 73.3
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 2.6e-64 250.0 203 62.6
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 4.4e-64 249.2 147 79.6
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 5.8e-64 248.8 171 70.2
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 5.8e-64 248.8 214 59.3
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 7.5e-64 248.4 168 70.2
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 7.5e-64 248.4 168 70.2
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 7.5e-64 248.4 216 58.3
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 9.8e-64 248.1 227 58.1
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 9.8e-64 248.1 228 57.5
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 1.3e-63 247.7 144 79.9
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.3e-63 247.7 175 68.6
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 6.4e-63 245.4 147 76.9
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 1.1e-62 244.6 221 58.4
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 2.4e-62 243.4 226 56.6
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 2.4e-62 243.4 137 78.1
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 2.4e-62 243.4 137 78.1
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 3.2e-62 243.0 175 67.4
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 4.1e-62 242.7 137 77.4
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 5.4e-62 242.3 224 56.7
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 7.0e-62 241.9 146 76.7
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 9.2e-62 241.5 238 53.4
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.2e-61 241.1 176 67.6
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 3.5e-61 239.6 171 67.3
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 3.5e-61 239.6 171 67.3
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 7.8e-61 238.4 174 66.1
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 1.0e-60 238.0 156 71.2
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 1.7e-60 237.3 173 66.5
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 1.7e-60 237.3 142 75.4
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 8.6e-60 235.0 215 58.1
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 8.6e-60 235.0 144 75.0
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.1e-59 234.6 138 76.1
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.1e-59 234.6 138 76.1
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 1.5e-59 234.2 214 57.5
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 7.3e-59 231.9 126 84.1
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.6e-58 229.6 145 70.3
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.3e-57 226.9 141 71.6
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 3.1e-57 226.5 158 64.6
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.6e-53 214.2 153 63.4
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 1.1e-46 191.4 137 59.1
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 7.1e-46 188.7 256 46.9
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 7.8e-45 185.3 139 59.0
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 2.4e-41 173.7 95 81.1
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 2.6e-40 170.2 137 56.9
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 3.4e-40 169.9 94 76.6
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 5.8e-40 169.1 94 79.8
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 4.2e-38 162.9 84 85.7
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 2.2e-31 140.6 76 80.3
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 2.2e-31 140.6 117 54.7
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 6.4e-31 139.0 135 47.4
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 3.9e-28 129.8 212 39.2
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.5e-24 117.9 82 58.5
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 2.0e-24 117.5 121 54.5
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 2.2e-23 114.0 76 65.8
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 8.4e-23 112.1 55 85.5
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 5.4e-22 109.4 132 48.5
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 2.3e-20 104.0 114 50.0
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 6.7e-20 102.4 152 44.1
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 3.3e-19 100.1 84 57.1
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.3e-19 100.1 84 60.7
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 1.3e-15 88.2 77 61.0
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 7.9e-13 79.0 91 51.6
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 9.3e-06 55.5 37 64.9


User provided reference genes

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