Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 4.9e-61 237.7 123 100.0
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 6.3e-24 114.4 100 68.0
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.3e-24 114.4 100 67.0
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 8.2e-24 114.0 100 66.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.1e-23 113.6 100 66.0
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.8e-23 112.8 99 61.6
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.8e-23 112.8 99 64.6
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 3.1e-23 112.1 100 66.0
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 3.1e-23 112.1 99 63.6
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 3.1e-23 112.1 99 63.6
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 4.1e-23 111.7 100 66.0
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.1e-23 111.7 100 63.0
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 4.1e-23 111.7 99 63.6
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 5.3e-23 111.3 100 66.0
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 5.3e-23 111.3 100 66.0
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 5.3e-23 111.3 100 66.0
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.3e-23 111.3 99 63.6
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 5.3e-23 111.3 100 66.0
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 6.9e-23 110.9 100 65.0
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 6.9e-23 110.9 99 62.6
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 6.9e-23 110.9 99 62.6
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 6.9e-23 110.9 99 62.6
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 6.9e-23 110.9 100 64.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 6.9e-23 110.9 102 62.7
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 6.9e-23 110.9 98 65.3
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 6.9e-23 110.9 130 54.6
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 9.0e-23 110.5 99 62.6
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 9.0e-23 110.5 66 86.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 9.0e-23 110.5 99 63.6
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 9.0e-23 110.5 100 65.0
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 9.0e-23 110.5 100 65.0
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 9.0e-23 110.5 99 61.6
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.2e-22 110.2 99 62.6
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.2e-22 110.2 100 65.0
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 1.2e-22 110.2 100 63.0
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.2e-22 110.2 100 61.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.5e-22 109.8 98 63.3
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.5e-22 109.8 99 62.6
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.5e-22 109.8 100 65.0
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 2.0e-22 109.4 66 83.3
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 2.0e-22 109.4 99 61.6
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.0e-22 109.4 99 61.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 2.0e-22 109.4 100 63.0
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.0e-22 109.4 99 62.6
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 2.6e-22 109.0 98 65.3
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.6e-22 109.0 100 65.0
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.6e-22 109.0 98 66.3
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 2.6e-22 109.0 100 63.0
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 3.4e-22 108.6 100 63.0
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.4e-22 108.6 99 60.6
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.4e-22 108.6 66 84.8
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 4.5e-22 108.2 97 64.9
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 4.5e-22 108.2 98 63.3
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 4.5e-22 108.2 98 63.3
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 4.5e-22 108.2 98 63.3
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 4.5e-22 108.2 98 63.3
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 4.5e-22 108.2 100 62.0
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 4.5e-22 108.2 98 63.3
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.5e-22 108.2 100 64.0
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.5e-22 108.2 100 64.0
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.5e-22 108.2 100 64.0
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 4.5e-22 108.2 98 63.3
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 5.9e-22 107.8 99 64.6
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 5.9e-22 107.8 66 83.3
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.9e-22 107.8 99 60.6
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 5.9e-22 107.8 99 60.6
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 5.9e-22 107.8 100 64.0
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 5.9e-22 107.8 100 62.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 5.9e-22 107.8 100 64.0
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.9e-22 107.8 66 81.8
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 5.9e-22 107.8 100 64.0
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 5.9e-22 107.8 97 66.0
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 7.6e-22 107.5 100 64.0
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 7.6e-22 107.5 66 81.8
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 7.6e-22 107.5 100 61.0
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 7.6e-22 107.5 98 65.3
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 7.6e-22 107.5 98 64.3
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 7.6e-22 107.5 66 81.8
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 7.6e-22 107.5 99 58.6
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 1.0e-21 107.1 98 62.2
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 1.0e-21 107.1 98 62.2
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.0e-21 107.1 98 62.2
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.0e-21 107.1 100 63.0
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.0e-21 107.1 100 62.0
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.0e-21 107.1 100 64.0
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.0e-21 107.1 100 63.0
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.0e-21 107.1 100 62.0
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.0e-21 107.1 100 62.0
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.3e-21 106.7 100 63.0
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.3e-21 106.7 100 64.0
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.3e-21 106.7 98 63.3
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.3e-21 106.7 100 60.0
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.7e-21 106.3 100 62.0
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.7e-21 106.3 100 63.0
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.7e-21 106.3 98 63.3
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.7e-21 106.3 100 63.0
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 2.2e-21 105.9 65 81.5
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.2e-21 105.9 66 81.8
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 2.2e-21 105.9 100 62.0
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.2e-21 105.9 65 81.5
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.2e-21 105.9 99 59.6
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.2e-21 105.9 99 59.6
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.2e-21 105.9 99 59.6
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 2.9e-21 105.5 96 62.5
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 2.9e-21 105.5 89 65.2
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.8e-21 105.1 100 62.0
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.8e-21 105.1 100 62.0
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.8e-21 105.1 66 80.3
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 5.0e-21 104.8 66 78.8
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 6.5e-21 104.4 99 57.6
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 6.5e-21 104.4 98 62.2
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 6.5e-21 104.4 100 63.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 8.5e-21 104.0 98 61.2
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 8.5e-21 104.0 100 60.0
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 8.5e-21 104.0 100 61.0
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 8.5e-21 104.0 99 59.6
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 8.5e-21 104.0 99 58.6
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-20 103.6 99 58.6
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-20 103.6 99 58.6
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.1e-20 103.6 98 62.2
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.1e-20 103.6 100 60.0
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.4e-20 103.2 98 61.2
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.4e-20 103.2 98 61.2
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.4e-20 103.2 98 60.2
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.4e-20 103.2 99 58.6
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.4e-20 103.2 66 78.8
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.9e-20 102.8 98 60.2
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.9e-20 102.8 98 61.2
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 2.5e-20 102.4 62 85.5
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.5e-20 102.4 100 59.0
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 3.2e-20 102.1 65 76.9
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 3.2e-20 102.1 100 57.0
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 3.2e-20 102.1 100 57.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 5.5e-20 101.3 97 54.6
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.5e-20 101.3 97 54.6
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 5.5e-20 101.3 100 59.0
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 5.5e-20 101.3 65 76.9
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 7.2e-20 100.9 98 54.1
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.2e-20 100.9 66 75.8
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.3e-20 100.5 65 80.0
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.3e-20 100.5 65 80.0
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 9.3e-20 100.5 111 56.8
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.2e-19 100.1 97 60.8
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.2e-19 100.1 97 53.6
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.2e-19 100.1 70 74.3
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.6e-19 99.8 97 53.6
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 3.6e-19 98.6 100 58.0
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 4.6e-19 98.2 99 60.6
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.1e-19 97.8 108 57.4
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 5.3e-15 84.7 65 70.8
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 5.3e-15 84.7 53 81.1
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 6.9e-15 84.3 53 81.1
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 5.9e-14 81.3 51 80.4
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.9e-13 79.0 53 77.4
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 2.9e-13 79.0 53 77.4
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 7.2e-12 74.3 61 62.3
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.3e-10 69.3 72 59.7
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 8.8e-10 67.4 102 44.1
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.5e-09 66.6 66 57.6
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 4.4e-09 65.1 62 53.2
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 9.7e-09 63.9 37 83.8


User provided reference genes

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