Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42321 Davidia involucrata HOM05D006545 ORTHO05D007985 3.3e-34 147.9 79 100.0
MSTRG.10562 Avicennia marina HOM05D006545 ORTHO05D007985 3.1e-32 141.4 79 94.9
Dinv36770 Davidia involucrata HOM05D006545 ORTHO05D007985 3.1e-32 141.4 79 94.9
Actinidia29903 Actinidia chinensis HOM05D000085 ORTHO05D001460 2.6e-31 138.3 79 92.4
Gohir.A05G030100 Gossypium hirsutum HOM05D006545 ORTHO05D007985 7.6e-31 136.7 79 91.1
Gohir.D05G031500 Gossypium hirsutum HOM05D006545 ORTHO05D007985 7.6e-31 136.7 79 91.1
Gorai.009G031700 Gossypium raimondii HOM05D006545 ORTHO05D007985 7.6e-31 136.7 79 91.1
Thecc.09G088900 Theobroma cacao HOM05D006545 ORTHO05D007985 7.6e-31 136.7 79 91.1
Migut.L01494 Erythranthe guttata HOM05D006545 ORTHO05D007985 9.9e-31 136.3 79 89.9
GSVIVG01015199001 Vitis vinifera HOM05D006545 ORTHO05D007985 9.9e-31 136.3 79 87.3
Duzib168G1224 Durio zibethinus HOM05D006545 ORTHO05D007985 2.9e-30 134.8 79 89.9
Cfa003081 Carpinus fangiana HOM05D000085 ORTHO05D001460 4.9e-30 134.0 79 91.1
Actinidia19138 Actinidia chinensis HOM05D006545 ORTHO05D007985 6.4e-30 133.7 79 91.1
PGSC0003DMG400000279 Solanum tuberosum HOM05D006545 ORTHO05D007985 6.4e-30 133.7 79 91.1
PGR102G1056 Punica granatum HOM05D006545 ORTHO05D007985 8.4e-30 133.3 79 91.1
Duzib150G0099 Durio zibethinus HOM05D006545 ORTHO05D007985 1.1e-29 132.9 79 89.9
HanXRQChr12g0363181 Helianthus annuus HOM05D006545 ORTHO05D007985 1.1e-29 132.9 79 88.6
Solyc12g008860.3 Solanum lycopersicum HOM05D006545 ORTHO05D007985 1.1e-29 132.9 79 89.9
Sopen12g003790 Solanum pennellii HOM05D006545 ORTHO05D007985 1.1e-29 132.9 79 89.9
vmacro06292 Vaccinium macrocarpon HOM05D006545 ORTHO05D007985 1.1e-29 132.9 79 87.3
DCAR_028856 Daucus carota HOM05D006545 ORTHO05D007985 1.4e-29 132.5 76 92.1
DCAR_032235 Daucus carota HOM05D006545 ORTHO05D007985 1.4e-29 132.5 76 92.1
TAR383G1000 Trochodendron aralioides HOM05D006545 ORTHO05D007985 2.4e-29 131.7 78 87.2
Gohir.A13G193400 Gossypium hirsutum HOM05D006545 ORTHO05D007985 4.1e-29 131.0 79 87.3
Nn8g38862 Nelumbo nucifera HOM05D006545 ORTHO05D007985 4.1e-29 131.0 79 88.6
CiPaw.04G149100 Carya illinoinensis HOM05D006545 ORTHO05D007985 7.1e-29 130.2 79 89.9
Potri.004G215200 Populus trichocarpa HOM05D006545 ORTHO05D007985 9.2e-29 129.8 79 87.3
CiPaw.03G215100 Carya illinoinensis HOM05D006545 ORTHO05D007985 1.6e-28 129.0 79 88.6
CDE06G0764 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 1.6e-28 129.0 79 86.1
CDE07G1614 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 1.6e-28 129.0 79 86.1
Ciclev10010087m.g Citrus clementina HOM05D006545 ORTHO05D007985 1.6e-28 129.0 79 88.6
Cc06_g11430 Coffea canephora HOM05D006545 ORTHO05D007985 1.6e-28 129.0 79 83.5
Gohir.D13G199200 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.6e-28 129.0 79 86.1
Lj4g0002489 Lotus japonicus HOM05D006545 ORTHO05D007985 3.5e-28 127.9 79 87.3
Nitab4.5_0000540g0270 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.5e-28 127.9 79 86.1
Nitab4.5_0008523g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 6.0e-28 127.1 79 87.3
Gorai.013G227700 Gossypium raimondii HOM05D006545 ORTHO05D007985 7.8e-28 126.7 79 84.8
MBI04_g31162_MAGBIO Magnolia biondii HOM05D006545 ORTHO05D007985 1.0e-27 126.3 79 79.7
Manes.03G034000 Manihot esculenta HOM05D006545 ORTHO05D007985 1.0e-27 126.3 76 86.8
Sc18g0002090 Simmondsia chinensis HOM05D000085 ORTHO05D001460 1.0e-27 126.3 78 85.9
unitig_85.g27258 Utricularia gibba HOM05D006545 ORTHO05D007985 1.0e-27 126.3 79 84.8
CANSAT56G1499 Cannabis sativa HOM05D006545 ORTHO05D007985 1.7e-27 125.6 79 86.1
CANSAT56G4473 Cannabis sativa HOM05D006545 ORTHO05D007985 1.7e-27 125.6 79 86.1
Glyma.13G104200 Glycine max HOM05D006545 ORTHO05D007985 1.7e-27 125.6 79 84.8
Glyma.17G054900 Glycine max HOM05D006545 ORTHO05D007985 1.7e-27 125.6 79 84.8
Lsat_1_v5_gn_7_37040 Lactuca sativa HOM05D006545 ORTHO05D007985 2.3e-27 125.2 76 85.5
Phvul.003G136800 Phaseolus vulgaris HOM05D006545 ORTHO05D007985 2.3e-27 125.2 79 83.5
TWI34G0024 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 2.3e-27 125.2 79 88.6
CsaV3_1G040450 Cucumis sativus L. HOM05D006545 ORTHO05D007985 3.0e-27 124.8 79 79.7
QL02p062521 Quercus lobata HOM05D006545 ORTHO05D007985 3.0e-27 124.8 78 85.9
Manes.16G101800 Manihot esculenta HOM05D006545 ORTHO05D007985 3.9e-27 124.4 76 86.8
MELO3C015473.2 Cucumis melo HOM05D006545 ORTHO05D007985 5.1e-27 124.0 74 81.1
EL10Ac8g19212 Beta vulgaris HOM05D006545 ORTHO05D007985 6.6e-27 123.6 79 81.0
ClCG03G015590 Citrullus lanatus HOM05D006545 ORTHO05D007985 6.6e-27 123.6 79 77.2
FvH4_1g07510 Fragaria vesca HOM05D006545 ORTHO05D007985 6.6e-27 123.6 79 83.5
FAN19G0384 Fragaria x ananassa HOM05D006545 ORTHO05D007985 6.6e-27 123.6 79 83.5
FAN23G2021 Fragaria x ananassa HOM05D006545 ORTHO05D007985 6.6e-27 123.6 79 83.5
FAN26G0590 Fragaria x ananassa HOM05D006545 ORTHO05D007985 6.6e-27 123.6 79 83.5
ATR0749G052 Amborella trichopoda HOM05D006545 ORTHO05D007985 8.7e-27 123.2 79 77.2
TWI63G0169 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 8.7e-27 123.2 79 87.3
unitig_699.g19296 Utricularia gibba HOM05D006545 ORTHO05D007985 8.7e-27 123.2 79 79.7
RcHm_v2.0_Chr2g0093401 Rosa chinensis HOM05D006545 ORTHO05D007985 1.1e-26 122.9 79 83.5
Sabra06G0115900 Salix brachista HOM05D006545 ORTHO05D007985 1.9e-26 122.1 79 81.0
Atru.chr7.1592 Acer truncatum HOM05D006545 ORTHO05D007985 3.3e-26 121.3 79 84.8
ECA240G1755 Erigeron canadensis HOM05D006545 ORTHO05D007985 5.6e-26 120.6 76 81.6
Eucgr.C00895 Eucalyptus grandis HOM05D006545 ORTHO05D007985 5.6e-26 120.6 74 85.1
Potri.006G146800 Populus trichocarpa HOM05D006545 ORTHO05D007985 7.3e-26 120.2 79 79.7
Nitab4.5_0006552g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 9.6e-26 119.8 75 86.7
PSO832G3375 Papaver somniferum HOM05D006545 ORTHO05D007985 9.6e-26 119.8 79 74.7
THA.LOC104820022 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 9.6e-26 119.8 76 84.2
PSO063G6244 Papaver somniferum HOM05D006545 ORTHO05D007985 1.6e-25 119.0 79 74.7
Ah.09g228260 Amaranthus hybridus HOM05D006545 ORTHO05D007985 2.1e-25 118.6 79 78.5
Thhalv10026717m.g Eutrema salsugineum HOM05D006545 ORTHO05D007985 6.2e-25 117.1 76 81.6
Sp7g27510 Schrenkiella parvula HOM05D006545 ORTHO05D007985 6.2e-25 117.1 76 81.6
AL7G22570 Arabidopsis lyrata HOM05D006545 ORTHO05D007985 8.1e-25 116.7 76 81.6
Carub.0007s1077 Capsella rubella HOM05D006545 ORTHO05D007985 8.1e-25 116.7 76 81.6
CARHR237610 Cardamine hirsuta HOM05D006545 ORTHO05D007985 8.1e-25 116.7 76 81.6
Psat4g015120 Pisum sativum HOM05D006545 ORTHO05D007985 8.1e-25 116.7 76 80.3
AUR62029070 Chenopodium quinoa HOM05D006545 ORTHO05D007985 1.1e-24 116.3 78 79.5
THA.LOC104814622 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 1.1e-24 116.3 75 81.3
Aa31LG2G20830 Aethionema arabicum HOM05D006545 ORTHO05D007985 1.8e-24 115.5 76 80.3
AT4G29735 Arabidopsis thaliana HOM05D006545 ORTHO05D007985 1.8e-24 115.5 76 80.3
AUR62033964 Chenopodium quinoa HOM05D006545 ORTHO05D007985 1.8e-24 115.5 78 78.2
Os06g0567000 Oryza sativa ssp. japonica HOM05D006545 ORTHO05D007985 1.8e-24 115.5 76 78.9
Prupe.7G209400 Prunus persica HOM05D006545 ORTHO05D007985 2.4e-24 115.2 79 81.0
Sed0026852 Sechium edule HOM05D006545 ORTHO05D007985 2.4e-24 115.2 79 75.9
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 3.1e-24 114.8 79 78.5
Medtr4g126270 Medicago truncatula HOM05D000085 ORTHO05D001460 4.0e-24 114.4 79 77.2
Lalb_Chr13g0299701 Lupinus albus HOM05D006545 ORTHO05D007985 9.0e-24 113.2 76 76.3
Zm00001eb277360 Zea mays HOM05D006545 ORTHO05D007985 1.2e-23 112.8 75 77.3
arahy.Tifrunner.gnm1.ann1.CH1R66 Arachis hypogaea HOM05D006545 ORTHO05D007985 2.0e-23 112.1 79 77.2
arahy.Tifrunner.gnm1.ann1.S1CX09 Arachis hypogaea HOM05D006545 ORTHO05D007985 2.0e-23 112.1 79 77.2
Zm00001eb383910 Zea mays HOM05D006545 ORTHO05D007985 2.0e-23 112.1 76 76.3
Aqoxy7G01208 Aquilegia oxysepala HOM05D006545 ORTHO05D007985 2.6e-23 111.7 78 74.4
arahy.Tifrunner.gnm1.ann1.MQ59WG Arachis hypogaea HOM05D000085 ORTHO05D001460 2.6e-23 111.7 74 79.7
BcaNung00485 Brassica carinata HOM05D006545 ORTHO05D007985 3.4e-23 111.3 76 77.6
PSO210G4511 Papaver somniferum HOM05D006545 ORTHO05D007985 3.4e-23 111.3 79 75.9
A03p59030 Brassica napus HOM05D006545 ORTHO05D007985 4.4e-23 110.9 76 77.6
Lalb_Chr07g0180851 Lupinus albus HOM05D006545 ORTHO05D007985 4.4e-23 110.9 76 76.3
C03p89150 Brassica napus HOM05D006545 ORTHO05D007985 5.8e-23 110.5 76 77.6
PSO210G2413 Papaver somniferum HOM05D006545 ORTHO05D007985 5.8e-23 110.5 79 75.9
TAR624G0377 Trochodendron aralioides HOM05D002302 ORTHO05D002728 7.6e-23 110.2 68 83.8
Nitab4.5_0004526g0070 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.3e-22 109.4 63 93.7
BcaC01g01182 Brassica carinata HOM05D006545 ORTHO05D007985 1.7e-22 109.0 76 76.3
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 1.7e-22 109.0 76 76.3
A01p08390 Brassica napus HOM05D000125 ORTHO05D000120 3.8e-22 107.8 76 76.3
BraA01t00787Z Brassica rapa HOM05D000125 ORTHO05D000120 3.8e-22 107.8 76 76.3
MD02G1079700 Malus domestica HOM05D006545 ORTHO05D007985 6.4e-22 107.1 76 73.7
COL.COLO4_18197 Corchorus olitorius HOM05D002302 ORTHO05D002728 8.4e-22 106.7 68 82.4
Nitab4.5_0004223g0010 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.4e-21 105.9 63 87.3
MD15G1207400 Malus domestica HOM05D006545 ORTHO05D007985 4.2e-21 104.4 79 69.6
BcaC09g51752 Brassica carinata HOM05D006545 ORTHO05D007985 2.1e-20 102.1 76 72.4
Mapoly0003s0235 Marchantia polymorpha HOM05D006545 ORTHO05D007985 7.8e-20 100.1 79 65.8
BraA03t14963Z Brassica rapa HOM05D006545 ORTHO05D007985 1.3e-19 99.4 98 61.2
FAN26G2289 Fragaria x ananassa HOM05D006545 ORTHO05D007985 2.3e-19 98.6 65 78.5
SalBow5G5008 Salvia bowleyana HOM05D006545 ORTHO05D007985 3.0e-19 98.2 62 80.6
C07p57080 Brassica napus HOM05D006545 ORTHO05D007985 8.7e-19 96.7 63 82.5
BolC7t46179H Brassica oleracea HOM05D006545 ORTHO05D007985 1.5e-18 95.9 102 57.8
Nitab4.5_0000095g0160 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.5e-18 95.9 74 71.6
HPP92_008778 Vanilla planifolia HOM05D006545 ORTHO05D007985 1.9e-18 95.5 63 77.8
BcaC09g52224 Brassica carinata HOM05D006545 ORTHO05D007985 2.5e-18 95.1 63 82.5
C01p09720 Brassica napus HOM05D006545 ORTHO05D007985 9.6e-18 93.2 98 59.2
HanXRQChr12g0377121 Helianthus annuus HOM05D006545 ORTHO05D007985 2.8e-17 91.7 56 87.5
Pp3c11_23220 Physcomitrium patens HOM05D006545 ORTHO05D007985 6.2e-17 90.5 73 65.8
SMO361G0088 Selaginella moellendorffii HOM05D006545 ORTHO05D007985 3.1e-16 88.2 75 60.0
C01p09580 Brassica napus HOM05D000125 ORTHO05D007985 4.5e-15 84.3 63 76.2
Rhsim03G0232100 Rhododendron simsii HOM05D000004 ORTHO05D007985 3.2e-13 78.2 47 89.4
C01p09620 Brassica napus HOM05D006545 ORTHO05D007985 1.8e-11 72.4 96 52.1
Lj7C676T8 Lonicera japonica HOM05D006545 ORTHO05D007985 3.3e-10 68.2 37 94.6
A08p19550 Brassica napus HOM05D006545 ORTHO05D007985 9.6e-10 66.6 46 76.1
BcaB03g12615 Brassica carinata HOM05D006545 ORTHO05D007985 1.6e-09 65.9 47 70.2
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 3.1e-08 61.6 32 87.5
Pp3c7_2400 Physcomitrium patens HOM05D006545 ORTHO05D007985 2.0e-07 58.9 128 35.2
Actinidia25251 Actinidia chinensis HOM05D006545 ORTHO05D007985 2.6e-07 58.5 46 76.1
Rhsim05G0059100 Rhododendron simsii HOM05D006545 ORTHO05D007985 5.8e-07 57.4 37 75.7
unitig_699.g19997 Utricularia gibba HOM05D006545 ORTHO05D007985 7.6e-07 57.0 35 77.1
Sed0013060 Sechium edule HOM05D000140 ORTHO05D000087 4.9e-06 54.3 32 71.9


User provided reference genes

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