Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 6.4e-45 183.7 94 100.0
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 2.2e-29 132.1 94 71.3
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 2.1e-27 125.6 92 72.8
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 2.3e-26 122.1 94 70.2
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 1.9e-25 119.0 95 69.5
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 3.3e-25 118.2 94 69.1
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 7.4e-25 117.1 96 67.7
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 8.2e-24 113.6 99 63.6
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 8.2e-24 113.6 92 64.1
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 1.4e-23 112.8 91 70.3
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 3.1e-23 111.7 78 75.6
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 1.2e-22 109.8 94 59.6
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 5.8e-22 107.5 94 60.6
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 5.8e-22 107.5 94 63.8
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 1.3e-21 106.3 93 64.5
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 2.9e-21 105.1 97 58.8
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 2.9e-21 105.1 90 61.1
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 1.4e-20 102.8 96 61.5
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.9e-20 102.4 91 61.5
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 3.2e-20 101.7 82 69.5
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 7.1e-20 100.5 91 60.4
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 9.3e-20 100.1 90 61.1
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 1.2e-19 99.8 92 60.9
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.6e-19 99.4 78 70.5
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 1.6e-19 99.4 78 70.5
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 4.6e-19 97.8 92 62.0
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 8.7e-18 93.6 94 59.6
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 8.7e-18 93.6 97 54.6
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 1.1e-17 93.2 71 70.4
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 1.1e-17 93.2 99 55.6
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 1.9e-17 92.4 92 57.6
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 3.3e-17 91.7 63 73.0
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 3.7e-16 88.2 94 54.3
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 3.7e-16 88.2 138 43.5
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 4.8e-16 87.8 92 59.8
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 6.3e-16 87.4 93 55.9
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 1.4e-15 86.3 94 54.3
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 1.8e-15 85.9 97 57.7
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 3.1e-15 85.1 45 82.2
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 4.1e-15 84.7 94 54.3
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 5.3e-15 84.3 94 56.4
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 2.6e-14 82.0 93 55.9
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 7.7e-14 80.5 95 52.6
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 7.7e-14 80.5 95 52.6
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 7.7e-14 80.5 99 50.5
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 1.0e-13 80.1 93 52.7
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 1.3e-13 79.7 86 57.0
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.3e-13 79.7 98 53.1
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 1.2e-11 73.2 64 53.1
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 2.1e-11 72.4 42 76.2
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 4.6e-11 71.2 78 48.7
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.6e-11 71.2 57 64.9
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.6e-11 71.2 57 64.9
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 6.1e-11 70.9 102 42.2
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 6.1e-11 70.9 82 50.0
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 1.0e-10 70.1 74 50.0
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 2.3e-10 68.9 71 53.5
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 2.3e-10 68.9 68 51.5
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 3.9e-10 68.2 76 48.7
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 5.1e-10 67.8 93 51.6
unitig_52.g17095 Utricularia gibba HOM05D008202 ORTHO05D010302 5.7e-09 64.3 55 54.5
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 7.4e-09 63.9 96 42.7
CAN.G1325.3 Capsicum annuum HOM05D001685 ORTHO05D006653 4.8e-08 61.2 97 42.3
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 6.3e-08 60.8 71 45.1
unitig_52.g17250 Utricularia gibba HOM05D008202 ORTHO05D010302 8.2e-08 60.5 55 50.9
PGR102G0794 Punica granatum HOM05D008202 ORTHO05D010302 1.8e-07 59.3 80 46.2
Os01g0742766 Oryza sativa ssp. japonica HOM05D008202 ORTHO05D010302 3.1e-07 58.5 77 44.2
Zm00001eb371180 Zea mays HOM05D008202 ORTHO05D010302 5.3e-07 57.8 39 59.0
MD15G1197100 Malus domestica HOM05D008202 ORTHO05D010302 6.9e-07 57.4 86 44.2
PSO210G1322 Papaver somniferum HOM05D061259 ORTHO05D010302 9.1e-07 57.0 35 68.6
PSO210G2383 Papaver somniferum HOM05D061259 ORTHO05D010302 9.1e-07 57.0 35 68.6


User provided reference genes

Program Settings