Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 4.1e-92 341.3 160 100.0
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 9.2e-68 260.4 163 77.3
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 3.9e-66 255.0 155 78.1
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.1e-65 253.4 160 73.1
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.5e-65 253.1 141 84.4
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 2.5e-65 252.3 157 73.9
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 5.6e-65 251.1 153 73.9
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.2e-64 250.0 151 78.1
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 4.7e-64 248.1 140 82.1
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 4.7e-64 248.1 123 90.2
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 6.2e-64 247.7 149 77.9
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 8.0e-64 247.3 160 69.4
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 1.8e-63 246.1 146 80.1
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 2.3e-63 245.7 121 91.7
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 4.0e-63 245.0 157 72.6
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 5.2e-63 244.6 163 71.2
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 6.8e-63 244.2 146 80.1
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 8.9e-63 243.8 149 76.5
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 2.0e-62 242.7 146 80.8
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 2.6e-62 242.3 161 76.4
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 7.5e-62 240.7 149 73.2
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 9.8e-62 240.4 150 73.3
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 9.8e-62 240.4 165 71.5
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.3e-61 240.0 149 75.2
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 1.7e-61 239.6 163 71.2
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 2.2e-61 239.2 134 76.9
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 2.2e-61 239.2 156 73.1
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 2.2e-61 239.2 123 86.2
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 3.7e-61 238.4 164 70.7
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 4.9e-61 238.0 147 76.9
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 6.4e-61 237.7 161 70.2
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 3.2e-60 235.3 164 66.5
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 3.2e-60 235.3 146 76.7
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 9.2e-60 233.8 150 73.3
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 1.6e-59 233.0 156 68.6
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.1e-59 232.6 166 68.1
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 2.1e-59 232.6 140 78.6
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 2.7e-59 232.3 151 74.2
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 3.5e-59 231.9 133 77.4
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 4.6e-59 231.5 156 71.2
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 4.6e-59 231.5 140 77.1
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.0e-59 231.1 140 77.1
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 7.8e-59 230.7 158 70.3
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.3e-58 229.9 148 73.0
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 3.9e-58 228.4 155 67.7
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 5.1e-58 228.0 137 77.4
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.6e-58 227.6 140 75.7
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 8.6e-58 227.3 136 75.7
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.1e-57 226.9 154 66.9
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.1e-57 226.9 142 72.5
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.5e-57 226.5 156 67.3
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.5e-57 226.5 142 71.8
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 3.3e-57 225.3 161 67.7
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 9.5e-57 223.8 159 72.3
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 2.1e-56 222.6 130 76.9
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 2.1e-56 222.6 142 73.2
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 2.1e-56 222.6 162 68.5
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 4.7e-56 221.5 148 72.3
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 4.7e-56 221.5 137 70.8
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 6.2e-56 221.1 153 68.0
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 8.1e-56 220.7 143 70.6
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.1e-55 220.3 148 74.3
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.4e-55 219.9 146 69.9
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.8e-55 219.5 149 68.5
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.3e-55 219.2 136 72.8
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 8.9e-55 217.2 144 72.2
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 2.0e-54 216.1 140 71.4
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.0e-54 216.1 153 66.7
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.6e-54 215.7 153 65.4
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 3.4e-54 215.3 164 65.2
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 4.4e-54 214.9 140 70.7
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 9.9e-54 213.8 139 72.7
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.3e-53 213.4 138 71.7
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.7e-53 213.0 156 62.8
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 3.7e-53 211.8 140 69.3
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.1e-52 210.3 139 69.8
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 1.1e-52 210.3 136 72.1
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.1e-52 210.3 145 69.0
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 1.4e-52 209.9 139 69.1
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 3.2e-52 208.8 140 68.6
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 3.2e-52 208.8 142 66.9
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 3.2e-52 208.8 134 69.4
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 7.1e-52 207.6 136 70.6
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.6e-51 206.5 134 70.9
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.6e-51 206.5 134 70.9
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 4.6e-51 204.9 136 69.1
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.0e-50 203.8 136 69.9
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 2.3e-50 202.6 140 63.6
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 5.1e-50 201.4 117 76.1
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 5.1e-50 201.4 139 65.5
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 6.6e-50 201.1 151 62.3
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 8.6e-50 200.7 131 69.5
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 8.6e-50 200.7 148 64.9
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 1.1e-49 200.3 109 79.8
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.5e-49 199.9 119 73.1
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.5e-49 199.9 119 73.1
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.2e-48 196.8 135 62.2
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.6e-48 196.4 139 64.7
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 3.1e-47 192.2 137 68.6
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 5.8e-46 188.0 168 56.0
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 9.6e-41 170.6 103 76.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 4.6e-35 151.8 147 57.1
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.0e-34 150.6 95 70.5
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.3e-34 150.2 75 89.3
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 2.3e-34 149.4 161 52.8
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.9e-33 146.4 125 51.2
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 3.6e-32 142.1 117 54.7
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 2.0e-30 136.3 73 84.9
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 2.9e-29 132.5 74 77.0
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 4.2e-28 128.6 96 55.2
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 3.0e-26 122.5 89 57.3
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 5.1e-26 121.7 89 57.3
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 6.7e-26 121.3 114 45.6
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 3.3e-25 119.0 119 52.9
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.3e-24 117.1 89 55.1
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 3.7e-24 115.5 138 46.4
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 4.0e-23 112.1 93 49.5
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 7.1e-20 101.3 99 50.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 1.3e-18 97.1 92 47.8
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 2.3e-18 96.3 99 43.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 3.1e-15 85.9 67 58.2
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 1.7e-13 80.1 56 60.7
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.7e-13 80.1 63 63.5
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 1.3e-10 70.5 58 56.9
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 5.1e-10 68.6 70 47.1
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 8.7e-10 67.8 62 54.8
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 1.5e-09 67.0 67 46.3
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 2.4e-07 59.7 38 71.1
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 5.3e-07 58.5 85 40.0
GSVIVG01029385001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.5e-06 57.0 32 75.0


User provided reference genes

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