Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 1.9e-115 419.1 200 100.0
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 9.7e-91 337.0 199 83.4
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 5.5e-86 321.2 201 78.1
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 4.6e-85 318.2 200 76.0
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 5.7e-83 311.2 201 75.6
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.3e-82 310.1 194 76.8
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 8.2e-82 307.4 198 75.8
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 1.2e-80 303.5 204 73.5
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.7e-79 299.7 202 73.3
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 7.2e-78 294.3 196 73.5
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 1.1e-75 287.0 198 70.2
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 4.4e-75 285.0 190 71.1
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 5.7e-75 284.6 200 69.5
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 1.3e-74 283.5 198 66.7
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 1.1e-73 280.4 197 70.6
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 1.4e-73 280.0 271 56.1
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 2.4e-73 279.3 202 68.3
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 3.1e-73 278.9 200 68.5
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 4.1e-73 278.5 196 68.9
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 5.3e-73 278.1 198 69.7
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 7.7e-72 274.2 202 66.8
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 1.7e-71 273.1 194 67.5
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 1.7e-71 273.1 195 69.2
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 2.9e-71 272.3 198 67.7
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.1e-70 270.4 215 63.7
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.9e-70 269.6 202 66.3
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 5.5e-70 268.1 197 69.0
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 7.2e-70 267.7 197 66.5
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 9.4e-70 267.3 190 68.4
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 1.6e-69 266.5 196 67.9
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 2.7e-69 265.8 205 65.4
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 2.7e-69 265.8 197 69.5
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 2.7e-69 265.8 195 65.1
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 3.6e-69 265.4 196 67.9
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 4.7e-69 265.0 192 69.3
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 6.1e-69 264.6 197 67.0
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 7.9e-69 264.2 196 66.8
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 1.0e-68 263.8 196 66.3
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 1.4e-68 263.5 204 63.2
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 1.4e-68 263.5 195 64.6
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 1.8e-68 263.1 193 68.4
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 3.0e-68 262.3 197 66.0
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 3.0e-68 262.3 194 64.9
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 3.0e-68 262.3 195 65.6
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.9e-68 261.9 196 65.3
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 1.5e-67 260.0 195 63.6
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 5.7e-67 258.1 196 64.8
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 5.7e-67 258.1 190 64.7
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 9.7e-67 257.3 194 64.4
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 1.7e-66 256.5 195 65.1
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 2.2e-66 256.1 195 64.6
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 3.7e-66 255.4 195 64.1
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 4.8e-66 255.0 195 62.1
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 4.8e-66 255.0 195 64.1
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 6.3e-66 254.6 197 65.5
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 8.2e-66 254.2 189 65.1
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 8.2e-66 254.2 189 65.1
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 4.1e-65 251.9 197 65.0
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 7.0e-65 251.1 210 61.4
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 9.1e-65 250.8 185 65.4
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 2.6e-64 249.2 197 62.4
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 3.5e-64 248.8 200 62.5
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 7.7e-64 247.7 215 57.7
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.0e-63 247.3 223 58.7
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 1.7e-63 246.5 195 63.1
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.7e-63 246.5 223 58.7
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 2.2e-63 246.1 198 62.6
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 8.5e-63 244.2 191 61.8
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 2.5e-62 242.7 188 62.8
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 7.2e-62 241.1 196 62.2
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 1.6e-61 240.0 202 60.4
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 2.1e-61 239.6 125 87.2
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 3.6e-61 238.8 136 79.4
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 6.1e-61 238.0 189 58.7
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 2.3e-60 236.1 178 66.9
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 4.0e-60 235.3 198 60.1
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 5.2e-60 235.0 189 57.7
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 1.2e-59 233.8 130 81.5
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 1.5e-59 233.4 256 51.2
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 4.4e-59 231.9 193 61.7
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 5.7e-59 231.5 171 64.9
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 9.7e-59 230.7 201 58.7
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 9.7e-59 230.7 197 57.9
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 1.1e-57 227.3 121 84.3
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 1.8e-57 226.5 205 59.5
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 9.1e-57 224.2 123 79.7
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 2.0e-56 223.0 122 80.3
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.0e-55 220.7 195 53.8
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 1.7e-55 219.9 195 57.4
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.7e-55 219.9 195 53.8
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 3.2e-54 215.7 189 55.6
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 7.2e-54 214.5 123 74.8
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 2.1e-53 213.0 195 55.4
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.7e-53 211.8 204 54.4
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 5.2e-52 208.4 179 60.3
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 5.4e-49 198.4 165 60.0
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 1.2e-48 197.2 162 61.7
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 1.6e-48 196.8 224 46.0
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 2.7e-48 196.1 255 45.5
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 7.7e-48 194.5 178 57.9
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 2.9e-47 192.6 114 71.9
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 1.5e-46 190.3 145 66.2
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 2.5e-46 189.5 113 73.5
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 2.1e-45 186.4 97 87.6
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 4.7e-45 185.3 137 60.6
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 2.3e-44 183.0 170 56.5
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 1.8e-41 173.3 117 58.1
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 2.7e-40 169.5 127 64.6
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 1.3e-39 167.2 117 58.1
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 3.8e-39 165.6 115 61.7
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 7.3e-38 161.4 201 45.8
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 1.2e-37 160.6 159 54.7
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 4.7e-37 158.7 142 56.3
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 6.1e-37 158.3 135 59.3
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 1.0e-36 157.5 271 39.9
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 4.4e-35 152.1 138 56.5
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.2e-32 144.1 140 52.9
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 1.1e-30 137.5 102 56.9
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 6.2e-29 131.7 109 51.4
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 1.4e-28 130.6 100 62.0
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 1.8e-28 130.2 63 90.5
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.9e-25 120.2 100 45.0
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 9.2e-25 117.9 105 47.6
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 2.7e-24 116.3 60 80.0
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 4.6e-24 115.5 96 51.0
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 7.8e-24 114.8 58 87.9
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 7.8e-24 114.8 112 56.2
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 8.6e-23 111.3 100 46.0
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 8.9e-20 101.3 113 48.7
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 1.1e-17 94.4 104 42.3
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 4.1e-17 92.4 113 35.4
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 6.0e-16 88.6 112 37.5
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 1.2e-13 80.9 42 81.0
TPR.G17607 Trifolium pratense HOM05D005520 ORTHO05D006633 5.2e-12 75.5 96 44.8
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 6.8e-12 75.1 114 41.2
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 3.4e-11 72.8 112 39.3
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.2e-09 66.2 35 77.1
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 3.2e-09 66.2 35 77.1
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.6e-08 63.9 117 35.0
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 4.3e-06 55.8 114 35.1
BolC6t35595H Brassica oleracea HOM05D040450 ORTHO05D033487 5.6e-06 55.5 26 88.5


User provided reference genes

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