Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 3.6e-143 511.5 252 100.0
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 1.3e-137 493.0 252 94.8
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.1e-135 485.7 250 94.0
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.1e-135 485.7 250 94.0
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 3.2e-131 471.9 253 91.3
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 3.5e-130 468.4 252 88.9
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.8e-130 467.2 252 87.7
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 1.3e-129 466.5 253 90.9
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 1.7e-129 466.1 254 89.8
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 1.7e-129 466.1 254 89.8
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.5e-128 463.0 250 90.8
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 5.6e-128 461.1 250 90.4
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.8e-127 458.8 248 87.5
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 6.2e-127 457.6 253 88.9
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 6.2e-127 457.6 253 89.3
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 8.1e-127 457.2 248 87.1
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.1e-126 456.8 279 81.7
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 1.8e-126 456.1 253 89.3
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 5.2e-126 454.5 257 86.4
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 8.9e-126 453.8 254 87.4
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 8.9e-126 453.8 254 86.6
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 1.2e-125 453.4 253 87.7
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 1.2e-125 453.4 254 87.4
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 1.2e-125 453.4 254 86.2
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.5e-125 453.0 254 87.8
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 1.5e-125 453.0 254 87.0
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 2.0e-125 452.6 252 88.9
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 2.6e-125 452.2 254 86.2
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 4.4e-125 451.4 255 87.5
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 5.8e-125 451.1 248 86.3
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 2.9e-124 448.7 254 86.2
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 2.9e-124 448.7 253 85.8
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 3.7e-124 448.4 261 85.1
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 3.7e-124 448.4 250 88.0
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 8.3e-124 447.2 253 85.8
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 1.1e-123 446.8 255 85.5
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 1.1e-123 446.8 255 85.5
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 1.4e-123 446.4 253 85.8
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 1.9e-123 446.0 253 85.0
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 3.2e-123 445.3 253 85.0
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 3.2e-123 445.3 253 85.0
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 3.2e-123 445.3 253 85.4
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 4.1e-123 444.9 250 85.6
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 5.4e-123 444.5 253 85.0
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 5.4e-123 444.5 254 85.4
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 7.1e-123 444.1 253 85.0
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 1.2e-122 443.4 248 84.3
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.2e-122 443.4 294 76.5
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.1e-122 442.6 275 81.1
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 2.1e-122 442.6 253 83.8
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 2.7e-122 442.2 252 84.9
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 2.7e-122 442.2 252 86.9
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 3.5e-122 441.8 253 86.2
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 4.6e-122 441.4 254 83.9
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 6.0e-122 441.0 248 84.7
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 6.0e-122 441.0 250 84.8
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 1.0e-121 440.3 253 84.2
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 1.3e-121 439.9 253 85.8
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 1.3e-121 439.9 255 85.1
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 1.7e-121 439.5 253 85.0
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 2.3e-121 439.1 256 83.6
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 3.0e-121 438.7 259 84.9
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.9e-121 438.3 253 84.6
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 3.9e-121 438.3 253 84.2
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 5.1e-121 438.0 256 83.6
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 8.6e-121 437.2 256 83.2
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 8.6e-121 437.2 280 77.9
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 1.5e-120 436.4 254 84.3
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 2.5e-120 435.6 258 83.7
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 3.3e-120 435.3 255 83.1
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 3.3e-120 435.3 259 83.0
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 3.3e-120 435.3 257 84.0
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 5.6e-120 434.5 253 84.6
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 7.3e-120 434.1 257 83.3
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 4.7e-119 431.4 247 81.4
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 4.7e-119 431.4 238 86.6
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 6.8e-118 427.6 253 83.0
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 2.0e-117 426.0 249 81.1
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 1.3e-116 423.3 249 81.1
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 1.7e-116 422.9 256 83.6
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 1.1e-115 420.2 250 80.0
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 2.4e-115 419.1 256 82.4
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 1.6e-114 416.4 225 87.6
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 3.0e-113 412.1 226 86.7
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 5.1e-113 411.4 252 82.1
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 3.6e-111 405.2 231 84.0
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 3.6e-111 405.2 231 84.0
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 3.2e-107 392.1 254 76.4
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 4.2e-107 391.7 248 77.0
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 2.3e-105 386.0 223 82.1
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 8.7e-105 384.0 254 77.2
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 2.5e-104 382.5 248 76.6
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 7.3e-104 380.9 250 77.6
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 7.3e-104 380.9 452 50.0
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 3.1e-102 375.6 208 86.5
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 5.3e-102 374.8 255 76.1
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 9.9e-101 370.5 280 70.7
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 1.7e-100 369.8 249 71.1
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 2.2e-100 369.4 248 77.8
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 5.4e-99 364.8 248 69.8
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 1.3e-97 360.1 249 69.9
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.0e-97 359.0 257 74.3
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 8.7e-97 357.5 240 75.0
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 1.1e-96 357.1 211 82.5
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.4e-94 350.1 207 81.2
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 9.9e-93 344.0 248 67.3
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 1.3e-92 343.6 249 69.1
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 2.2e-92 342.8 235 69.4
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 4.9e-92 341.7 194 86.1
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 1.9e-91 339.7 199 81.9
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 4.6e-90 335.1 248 70.2
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 3.0e-89 332.4 268 67.2
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 1.5e-88 330.1 253 68.8
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 3.1e-86 322.4 248 62.5
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 2.9e-84 315.8 336 56.2
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 6.5e-84 314.7 282 61.7
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 1.1e-83 313.9 206 79.1
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 3.3e-80 302.4 252 65.1
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 5.7e-80 301.6 210 73.3
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 2.2e-76 289.7 161 86.3
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 1.4e-75 287.0 207 70.5
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 9.4e-75 284.3 161 87.6
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 6.9e-70 268.1 225 54.2
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 2.0e-69 266.5 284 54.6
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 1.0e-68 264.2 170 76.5
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 1.0e-65 254.2 228 52.2
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 3.0e-65 252.7 145 87.6
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 3.0e-65 252.7 230 54.3
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 1.2e-61 240.7 180 70.0
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 4.2e-59 232.3 206 60.2
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 1.6e-58 230.3 145 73.8
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 7.0e-46 188.3 112 78.6
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 5.9e-45 185.3 115 77.4
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 1.9e-43 180.3 133 74.4
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 1.3e-36 157.5 91 79.1
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 6.6e-36 155.2 252 43.3
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 1.1e-35 154.5 92 76.1
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 2.3e-33 146.7 174 48.9
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-30 136.3 102 68.6
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 2.1e-18 97.1 51 84.3


User provided reference genes

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