Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 9.8e-237 823.2 442 100.0
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 6.5e-140 501.5 317 86.4
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 2.1e-138 496.5 318 85.2
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 3.6e-138 495.7 320 83.8
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.3e-135 487.3 312 84.6
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 1.7e-135 486.9 312 84.9
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 2.8e-135 486.1 346 80.3
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 4.8e-135 485.3 320 85.3
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.4e-134 483.8 335 79.7
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 9.1e-134 481.1 323 83.0
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 1.2e-133 480.7 333 81.4
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.6e-133 480.3 336 80.1
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 2.7e-133 479.6 328 83.8
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 5.9e-133 478.4 295 87.5
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 1.0e-132 477.6 320 81.6
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 8.6e-132 474.6 338 77.8
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 1.5e-131 473.8 325 80.6
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 2.5e-131 473.0 310 81.3
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 3.3e-131 472.6 339 77.9
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.6e-130 470.3 320 80.3
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.6e-130 470.3 320 80.0
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.6e-130 470.3 320 80.0
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 6.1e-130 468.4 322 80.7
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.4e-129 467.2 327 80.4
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 2.3e-129 466.5 330 79.7
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 3.0e-129 466.1 297 84.8
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.0e-129 465.7 310 81.3
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 4.0e-129 465.7 311 82.0
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 5.2e-129 465.3 320 80.6
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 2.6e-128 463.0 320 80.6
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 3.4e-128 462.6 309 80.6
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 5.7e-128 461.8 329 78.1
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 9.8e-128 461.1 328 78.7
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 2.2e-127 459.9 345 73.9
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 2.2e-127 459.9 303 83.8
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 4.9e-127 458.8 363 72.5
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 4.9e-127 458.8 323 78.6
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 6.3e-127 458.4 306 83.0
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 6.3e-127 458.4 306 83.0
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 6.3e-127 458.4 315 81.0
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 8.3e-127 458.0 316 78.5
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 8.3e-127 458.0 352 74.4
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.1e-126 457.6 321 81.0
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.8e-126 456.8 350 72.9
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 1.8e-126 456.8 304 81.2
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 2.4e-126 456.4 320 78.4
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 3.2e-126 456.1 323 76.2
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 7.0e-126 454.9 305 81.6
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 9.2e-126 454.5 338 77.5
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 9.2e-126 454.5 325 76.0
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 9.2e-126 454.5 298 81.2
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.2e-125 454.1 335 77.6
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.6e-125 453.8 327 79.2
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.6e-125 453.8 295 82.7
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 2.7e-125 453.0 365 71.8
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 3.5e-125 452.6 336 75.9
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 1.0e-124 451.1 310 81.0
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.0e-124 451.1 324 76.5
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.7e-124 450.3 325 77.2
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 3.9e-124 449.1 297 82.2
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 5.0e-124 448.7 307 78.8
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 6.6e-124 448.4 327 76.1
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 6.6e-124 448.4 290 82.8
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 3.3e-123 446.0 299 82.3
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 4.3e-123 445.7 300 81.7
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 5.6e-123 445.3 337 74.2
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 7.3e-123 444.9 319 77.4
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 7.3e-123 444.9 338 71.6
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.2e-122 444.1 334 74.6
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.2e-122 444.1 341 73.9
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 2.1e-122 443.4 294 80.6
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 2.1e-122 443.4 317 78.9
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 2.1e-122 443.4 293 84.3
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 2.1e-122 443.4 290 81.4
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 3.6e-122 442.6 334 73.7
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 3.6e-122 442.6 334 73.7
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 8.0e-122 441.4 276 87.0
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.8e-121 440.3 306 78.8
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.3e-121 439.9 317 76.7
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 8.9e-121 438.0 292 81.2
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 8.9e-121 438.0 306 78.4
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 2.0e-120 436.8 365 69.9
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 2.0e-120 436.8 322 76.1
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 3.4e-120 436.0 334 73.4
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 3.4e-120 436.0 337 74.5
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 7.5e-120 434.9 264 86.4
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.3e-119 434.1 300 80.0
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.7e-119 433.7 298 78.5
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 2.9e-119 433.0 253 88.5
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 4.1e-118 429.1 304 77.3
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 5.4e-118 428.7 270 82.6
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 3.5e-117 426.0 324 74.7
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 3.5e-117 426.0 324 74.7
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 7.8e-117 424.9 304 76.6
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-116 424.5 334 72.2
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 1.7e-116 423.7 324 74.1
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 7.3e-115 418.3 296 77.7
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 9.5e-115 417.9 316 75.3
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.8e-113 413.7 314 73.2
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.6e-112 409.8 344 69.8
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 3.4e-112 409.5 329 71.4
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 4.9e-111 405.6 269 79.9
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 1.4e-110 404.1 320 72.5
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.6e-109 400.6 257 79.8
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.9e-107 393.7 264 77.3
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 9.5e-107 391.3 245 83.7
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 4.0e-105 386.0 257 81.7
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 1.5e-104 384.0 240 84.6
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 2.0e-104 383.6 279 73.8
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 5.8e-104 382.1 258 79.5
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.9e-102 377.1 258 76.7
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.0e-100 369.8 253 74.3
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 2.8e-98 363.2 251 74.1
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.7e-95 354.0 195 95.9
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 1.9e-94 350.5 198 92.9
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 5.4e-94 349.0 330 62.1
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 7.1e-94 348.6 210 89.0
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.6e-93 347.4 290 66.9
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.0e-92 344.7 198 90.4
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 9.6e-91 338.2 198 89.4
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 4.8e-90 335.9 333 59.8
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 5.8e-88 328.9 335 60.3
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 7.6e-88 328.6 482 47.3
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 1.3e-82 311.2 199 81.9
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 3.1e-81 306.6 203 77.8
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 2.6e-80 303.5 199 80.9
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 6.4e-79 298.9 195 80.0
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.6e-77 294.3 195 79.0
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.6e-77 294.3 213 70.4
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.0e-76 291.6 199 75.4
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 5.8e-72 275.8 232 69.8
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.6e-69 267.7 155 89.7
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 2.1e-69 267.3 157 88.5
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.1e-69 267.3 156 90.4
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 3.5e-69 266.5 232 63.8
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 3.4e-56 223.4 223 61.0
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.0e-55 221.9 289 47.1
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.2e-53 214.9 196 58.7
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.6e-53 213.0 169 66.3
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.0e-52 211.8 127 82.7
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 2.0e-48 197.6 119 86.6
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 7.7e-48 195.7 170 67.1
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.1e-38 165.2 182 57.7
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.7e-37 160.6 221 48.9
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.8e-33 147.9 109 78.0
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 9.4e-30 135.6 76 89.5
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 1.0e-28 132.1 76 88.2
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.8e-28 131.3 104 68.3
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 2.0e-27 127.9 78 87.2
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 4.4e-27 126.7 69 92.8
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 1.1e-22 112.1 79 75.9
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 6.8e-20 102.8 64 78.1
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 2.6e-19 100.9 67 77.6
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 2.6e-19 100.9 61 86.9
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 1.2e-16 92.0 57 86.0
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 1.4e-12 78.6 58 70.7
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 1.7e-10 71.6 47 76.6
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 1.4e-09 68.6 93 48.4
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 7.0e-09 66.2 58 55.2
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 1.6e-08 65.1 57 57.9
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 4.6e-08 63.5 35 88.6
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 4.6e-08 63.5 39 84.6
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 1.0e-07 62.4 29 96.6


User provided reference genes

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