Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42111 Davidia involucrata HOM05D000823 ORTHO05D000088 5.6e-161 570.9 284 100.0
TAR376G0237 Trochodendron aralioides HOM05D000823 ORTHO05D000088 7.9e-54 214.9 276 46.7
QL11p039132 Quercus lobata HOM05D000823 ORTHO05D000088 4.3e-28 129.4 139 48.9
TWI79G1075 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 9.7e-28 128.3 281 35.6
Cfa004943 Carpinus fangiana HOM05D001372 ORTHO05D002010 3.1e-26 123.2 270 31.5
Lj5A204G92 Lonicera japonica HOM05D000823 ORTHO05D000088 4.6e-22 109.4 315 30.2
Eucgr.I01211 Eucalyptus grandis HOM05D000395 ORTHO05D000088 5.1e-21 105.9 273 29.7
Aqoxy1G00851 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 6.7e-21 105.5 275 30.5
Duzib248G0282 Durio zibethinus HOM05D000823 ORTHO05D009132 4.3e-20 102.8 276 30.1
MBI16_g19885_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 9.7e-20 101.7 282 31.2
Hma1.2p1_1527F.1_g289040 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 6.3e-19 99.0 121 43.8
RcHm_v2.0_Chr6g0259781 Rosa chinensis HOM05D000823 ORTHO05D000088 6.3e-19 99.0 141 41.8
RcHm_v2.0_Chr6g0259791 Rosa chinensis HOM05D000823 ORTHO05D000088 1.8e-18 97.4 182 33.0
FAN27G1325 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.4e-18 97.1 140 39.3
Rhsim11G0170400 Rhododendron simsii HOM05D000823 ORTHO05D000088 2.4e-18 97.1 237 38.4
RcHm_v2.0_Chr6g0259811 Rosa chinensis HOM05D000823 ORTHO05D009132 6.9e-18 95.5 129 43.4
Thecc.02G093100 Theobroma cacao HOM05D000823 ORTHO05D000088 9.1e-18 95.1 277 30.0
FAN15G0739 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.0e-17 94.0 142 38.0
FvH4_2g07300 Fragaria vesca HOM05D000823 ORTHO05D000088 2.6e-17 93.6 150 37.3
RcHm_v2.0_Chr6g0259881 Rosa chinensis HOM05D000823 ORTHO05D000088 5.9e-17 92.4 144 36.8
Nn6g32053 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.3e-16 91.3 239 32.2
FvH4_2g07290 Fragaria vesca HOM05D000823 ORTHO05D000088 2.2e-16 90.5 137 39.4
GSVIVG01031850001 Vitis vinifera HOM05D000823 ORTHO05D009132 4.2e-15 86.3 116 41.4
Aqoxy1G00852 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 5.5e-15 85.9 269 27.9
FAN15G0813 Fragaria x ananassa HOM05D000823 ORTHO05D000088 5.5e-15 85.9 160 35.6
Atru.chr5.2832 Acer truncatum HOM05D000823 ORTHO05D000088 1.6e-14 84.3 190 32.6
Actinidia12970 Actinidia chinensis HOM05D000823 ORTHO05D000088 2.1e-14 84.0 105 46.7
FAN24G0699 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.1e-14 84.0 145 36.6
Actinidia27929 Actinidia chinensis HOM05D000823 ORTHO05D009132 3.6e-14 83.2 107 41.1
FvH4_4g19990 Fragaria vesca HOM05D000823 ORTHO05D009132 3.6e-14 83.2 128 39.1
FAN12G2331 Fragaria x ananassa HOM05D000823 ORTHO05D000088 3.6e-14 83.2 156 35.9
FAN07G2326 Fragaria x ananassa HOM05D000823 ORTHO05D009132 4.7e-14 82.8 156 35.3
Ciclev10029372m.g Citrus clementina HOM05D000823 ORTHO05D009132 1.8e-13 80.9 122 37.7
Eucgr.I01210 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.8e-13 80.9 257 30.7
FvH4_2g07231 Fragaria vesca HOM05D000823 ORTHO05D000088 1.8e-13 80.9 145 35.9
Peaxi162Scf00016g01343 Petunia axillaris HOM05D000823 ORTHO05D000088 2.0e-12 77.4 139 36.7
Eucgr.F02399 Eucalyptus grandis HOM05D000823 ORTHO05D000088 5.7e-12 75.9 277 25.3
FvH4_2g07230 Fragaria vesca HOM05D000823 ORTHO05D000088 5.7e-12 75.9 78 46.2
RcHm_v2.0_Chr4g0425711 Rosa chinensis HOM05D000823 ORTHO05D000088 7.4e-12 75.5 125 39.2
RcHm_v2.0_Chr6g0259241 Rosa chinensis HOM05D000823 ORTHO05D000088 9.7e-12 75.1 140 30.7
RcHm_v2.0_Chr6g0259931 Rosa chinensis HOM05D000823 ORTHO05D000088 1.7e-11 74.3 110 36.4
FAN23G1978 Fragaria x ananassa HOM05D000823 ORTHO05D009132 2.2e-11 73.9 178 30.9
RcHm_v2.0_Chr6g0259331 Rosa chinensis HOM05D000823 ORTHO05D000088 2.8e-11 73.6 130 35.4
CAN.G322.80 Capsicum annuum HOM05D000823 ORTHO05D000088 3.7e-11 73.2 152 32.9
FAN19G0591 Fragaria x ananassa HOM05D000823 ORTHO05D009132 4.8e-11 72.8 189 30.7
Actinidia00476 Actinidia chinensis HOM05D000823 ORTHO05D000088 6.3e-11 72.4 132 35.6
FAN24G2044 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.1e-10 71.6 132 34.8
Solyc01g108930.3 Solanum lycopersicum HOM05D000823 ORTHO05D000088 1.1e-10 71.6 279 23.3
FvH4_2g06970 Fragaria vesca HOM05D000823 ORTHO05D000088 1.8e-10 70.9 130 33.1
Nn7g36387 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.8e-10 70.9 273 26.4
MD05G1072700 Malus domestica HOM05D000823 ORTHO05D000088 2.4e-10 70.5 117 30.8
GSVIVG01009586001 Vitis vinifera HOM05D000823 ORTHO05D000088 3.1e-10 70.1 293 24.9
Hma1.2p1_0260F.1_g104520 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 5.3e-10 69.3 284 24.6
Thecc.01G046600 Theobroma cacao HOM05D000823 ORTHO05D000088 5.3e-10 69.3 287 28.2
Lj5A205T72 Lonicera japonica HOM05D000823 ORTHO05D000088 7.0e-10 68.9 114 38.6
ATR0796G296 Amborella trichopoda HOM05D000823 ORTHO05D000088 9.1e-10 68.6 113 36.3
FAN24G0466 Fragaria x ananassa HOM05D000823 ORTHO05D000088 9.1e-10 68.6 121 34.7
TAR625G1233 Trochodendron aralioides HOM05D000823 ORTHO05D000088 9.1e-10 68.6 63 55.6
TAR628G1487 Trochodendron aralioides HOM05D000823 ORTHO05D000088 1.2e-09 68.2 102 34.3
FAN15G3650 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.0e-09 67.4 132 33.3
MSTRG.20125 Avicennia marina HOM05D000823 ORTHO05D000088 2.6e-09 67.0 115 35.7
Nn6g32134 Nelumbo nucifera HOM05D000823 ORTHO05D000088 2.6e-09 67.0 251 25.1
Sopen01g051130 Solanum pennellii HOM05D000823 ORTHO05D000088 2.6e-09 67.0 137 31.4
Medtr4g068310 Medicago truncatula HOM05D007600 ORTHO05D009132 3.5e-09 66.6 135 34.8
RcHm_v2.0_Chr6g0259321 Rosa chinensis HOM05D000823 ORTHO05D000088 5.9e-09 65.9 123 30.9
Gohir.D02G212900 Gossypium hirsutum HOM05D007600 ORTHO05D009132 7.7e-09 65.5 204 27.0
Lj2A601G13 Lonicera japonica HOM05D000395 ORTHO05D000088 1.0e-08 65.1 101 37.6
Lj2C600T9 Lonicera japonica HOM05D000395 ORTHO05D000088 1.7e-08 64.3 101 36.6
MD15G1034200 Malus domestica HOM05D000823 ORTHO05D000088 1.7e-08 64.3 270 25.9
PGR031G0338 Punica granatum HOM05D000823 ORTHO05D000088 1.7e-08 64.3 277 26.7
FAN24G1365 Fragaria x ananassa HOM05D000823 ORTHO05D009132 2.2e-08 63.9 167 29.3
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 2.2e-08 63.9 115 32.2
Lj2A600T56 Lonicera japonica HOM05D000395 ORTHO05D000088 2.9e-08 63.5 112 33.9
Duzib187G0271 Durio zibethinus HOM05D000823 ORTHO05D000088 3.8e-08 63.2 273 24.2
Nn5g29405 Nelumbo nucifera HOM05D000823 ORTHO05D000088 3.8e-08 63.2 127 29.9
Potri.014G036800 Populus trichocarpa HOM05D000823 ORTHO05D000088 3.8e-08 63.2 287 24.7
FvH4_2g07240 Fragaria vesca HOM05D000823 ORTHO05D009132 5.0e-08 62.8 167 28.7
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 5.0e-08 62.8 115 33.0
AUR62005183 Chenopodium quinoa HOM05D000823 ORTHO05D000088 6.5e-08 62.4 109 34.9
Dinv39357 Davidia involucrata HOM05D000823 ORTHO05D000088 6.5e-08 62.4 276 23.6
Nn6g32139 Nelumbo nucifera HOM05D000823 ORTHO05D000088 6.5e-08 62.4 100 35.0
TWI12G0966 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 8.5e-08 62.0 290 25.2
TAR625G0462 Trochodendron aralioides HOM05D000823 ORTHO05D000088 8.5e-08 62.0 111 33.3
TAR628G1113 Trochodendron aralioides HOM05D000395 ORTHO05D000088 8.5e-08 62.0 251 23.9
Dinv26764 Davidia involucrata HOM05D000823 ORTHO05D000088 1.5e-07 61.2 128 31.2
Aqoxy214s002 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 1.9e-07 60.8 209 28.2
Duzib093G1908 Durio zibethinus HOM05D000823 ORTHO05D000088 1.9e-07 60.8 297 23.9
FvH4_2g40640 Fragaria vesca HOM05D000823 ORTHO05D000088 1.9e-07 60.8 272 25.4
Peaxi162Scf00016g01342 Petunia axillaris HOM05D000823 ORTHO05D000088 1.9e-07 60.8 107 31.8
QL02p006444 Quercus lobata HOM05D000823 ORTHO05D000088 1.9e-07 60.8 298 25.8
Lj2C600G8 Lonicera japonica HOM05D000395 ORTHO05D000088 2.5e-07 60.5 111 36.0
Lj3g0010423 Lotus japonicus HOM05D010195 ORTHO05D000088 2.5e-07 60.5 125 31.2
arahy.Tifrunner.gnm1.ann1.4VG87B Arachis hypogaea HOM05D000823 ORTHO05D000088 3.2e-07 60.1 149 32.2
Hma1.2p1_0023F.1_g015270 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 3.2e-07 60.1 279 22.9
Prupe.8G113100 Prunus persica HOM05D000823 ORTHO05D000088 3.2e-07 60.1 230 27.0
Sabra14G0026500 Salix brachista HOM05D000823 ORTHO05D000088 3.2e-07 60.1 287 24.0
Ah.11g043200 Amaranthus hybridus HOM05D000823 ORTHO05D000088 4.2e-07 59.7 289 24.2
Cc00_g00220 Coffea canephora HOM05D008110 ORTHO05D000088 4.2e-07 59.7 113 31.9
Dinv26759 Davidia involucrata HOM05D000823 ORTHO05D000088 4.2e-07 59.7 99 38.4
Nitab4.5_0008194g0030 Nicotiana tabacum HOM05D000823 ORTHO05D000088 4.2e-07 59.7 83 37.3
Gohir.D07G038300 Gossypium hirsutum HOM05D000888 ORTHO05D000740 5.5e-07 59.3 127 33.1
Prupe.1G388200 Prunus persica HOM05D000823 ORTHO05D000088 5.5e-07 59.3 270 25.9
QL10p039053 Quercus lobata HOM05D000395 ORTHO05D000088 5.5e-07 59.3 126 31.0
Ciclev10000881m.g Citrus clementina HOM05D000823 ORTHO05D000088 7.2e-07 58.9 271 23.2
Nn5g28071 Nelumbo nucifera HOM05D000823 ORTHO05D000088 7.2e-07 58.9 128 29.7
Cc02_g18270 Coffea canephora HOM05D000823 ORTHO05D000088 9.4e-07 58.5 160 33.1
Lj7C16T11 Lonicera japonica HOM05D000395 ORTHO05D000088 9.4e-07 58.5 100 31.0
SGA_v2.0_scaffold32G13131 Striga asiatica HOM05D000823 ORTHO05D000088 9.4e-07 58.5 111 33.3
QL02p006491 Quercus lobata HOM05D000823 ORTHO05D000088 1.2e-06 58.2 101 32.7
TWI56G0922 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 1.2e-06 58.2 110 30.0
DCAR_029419 Daucus carota HOM05D000823 ORTHO05D000088 1.6e-06 57.8 103 35.0
Dinv23604 Davidia involucrata HOM05D000823 ORTHO05D000088 1.6e-06 57.8 151 29.8
FvH4_2g06960 Fragaria vesca HOM05D000823 ORTHO05D000088 2.1e-06 57.4 122 30.3
Os01g0723500 Oryza sativa ssp. japonica HOM05D000823 ORTHO05D000088 2.1e-06 57.4 144 29.9
Phvul.001G018500 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 2.1e-06 57.4 268 24.6
TWI75G0037 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 2.1e-06 57.4 99 30.3
vmacro04665 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 2.1e-06 57.4 138 29.0
VMungo0540G0559 Vigna mungo HOM05D000823 ORTHO05D000088 2.1e-06 57.4 206 24.3
ATR1132G056 Amborella trichopoda HOM05D000823 ORTHO05D000088 2.7e-06 57.0 100 33.0
Aqoxy6G00935 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 2.7e-06 57.0 96 32.3
CsaV3_3G044580 Cucumis sativus L. HOM05D000823 ORTHO05D000088 2.7e-06 57.0 273 23.8
Gorai.001G040300 Gossypium raimondii HOM05D000888 ORTHO05D000740 2.7e-06 57.0 127 31.5
Sed0023289 Sechium edule HOM05D000823 ORTHO05D000088 2.7e-06 57.0 148 29.1
Thecc.08G016800 Theobroma cacao HOM05D000823 ORTHO05D000088 2.7e-06 57.0 271 23.6
MELO3C007521.2 Cucumis melo HOM05D000823 ORTHO05D000088 3.6e-06 56.6 160 25.6
FAN27G1265 Fragaria x ananassa HOM05D000823 ORTHO05D000088 3.6e-06 56.6 272 24.6
Phvul.011G050700 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 3.6e-06 56.6 206 32.0
QL11p039199 Quercus lobata HOM05D000823 ORTHO05D000088 3.6e-06 56.6 111 28.8
Hund06204 Selenicereus undatus HOM05D000823 ORTHO05D000088 3.6e-06 56.6 95 31.6
ATR1120G190 Amborella trichopoda HOM05D000823 ORTHO05D000088 4.7e-06 56.2 288 24.7
CANSAT80G0874 Cannabis sativa HOM05D000823 ORTHO05D000088 4.7e-06 56.2 111 30.6
FAN27G1362 Fragaria x ananassa HOM05D000823 ORTHO05D000088 4.7e-06 56.2 116 29.3
RcHm_v2.0_Chr6g0300031 Rosa chinensis HOM05D000823 ORTHO05D000088 4.7e-06 56.2 271 24.4
arahy.Tifrunner.gnm1.ann1.8D6Z2X Arachis hypogaea HOM05D000823 ORTHO05D000088 8.0e-06 55.5 211 25.1
arahy.Tifrunner.gnm1.ann1.NFB9X0 Arachis hypogaea HOM05D000823 ORTHO05D000088 8.0e-06 55.5 211 25.1
CAN.G777.5 Capsicum annuum HOM05D000823 ORTHO05D000088 8.0e-06 55.5 101 33.7
Lj2A565G28 Lonicera japonica HOM05D000395 ORTHO05D000088 8.0e-06 55.5 98 35.7
Hund26609 Selenicereus undatus HOM05D000823 ORTHO05D000088 8.0e-06 55.5 307 23.5


User provided reference genes

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