Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 1.7e-52 210.3 246 100.0
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.6e-39 166.0 248 92.3
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.1e-35 154.5 252 85.7
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 4.1e-35 152.5 255 80.0
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.1e-35 152.5 251 79.7
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.5e-34 149.4 245 86.9
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 7.8e-34 148.3 253 86.2
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 1.7e-33 147.1 256 78.5
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 5.1e-33 145.6 245 84.9
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.9e-32 143.7 245 86.1
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 3.3e-32 142.9 250 84.0
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 5.6e-32 142.1 254 83.9
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.6e-31 140.6 237 86.9
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.6e-31 140.6 251 79.3
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 2.8e-31 139.8 261 77.8
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 2.8e-31 139.8 246 83.3
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.6e-31 139.4 244 83.6
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 3.6e-31 139.4 261 77.8
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 3.6e-31 139.4 261 77.8
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 3.6e-31 139.4 247 83.0
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 4.7e-31 139.0 260 76.5
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 4.7e-31 139.0 248 82.7
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 6.2e-31 138.7 251 83.7
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 6.2e-31 138.7 234 84.2
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.4e-30 137.5 256 82.8
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.4e-30 137.5 259 76.4
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 1.8e-30 137.1 254 77.6
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 3.1e-30 136.3 234 87.6
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 3.1e-30 136.3 263 75.7
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 5.2e-30 135.6 254 83.5
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 8.9e-30 134.8 255 77.6
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 8.9e-30 134.8 255 77.6
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 8.9e-30 134.8 263 76.0
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 2.0e-29 133.7 261 75.9
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.6e-29 133.3 264 76.5
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 2.6e-29 133.3 245 78.8
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.8e-29 132.1 265 76.6
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.7e-28 130.6 255 77.3
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 1.7e-28 130.6 249 83.9
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.7e-28 130.6 265 68.3
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.7e-28 130.6 252 83.7
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.8e-28 129.4 261 81.2
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 4.9e-28 129.0 261 75.5
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 6.4e-28 128.6 255 77.3
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 1.4e-27 127.5 258 81.0
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 2.4e-27 126.7 251 76.5
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.6e-26 124.0 262 74.4
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.6e-26 124.0 235 86.4
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 2.1e-26 123.6 259 75.3
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.7e-26 123.2 262 74.0
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 2.7e-26 123.2 264 73.5
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 7.8e-26 121.7 260 80.8
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 1.0e-25 121.3 261 74.7
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.0e-25 121.3 261 74.7
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.9e-25 119.4 234 74.4
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 2.5e-24 116.7 273 76.2
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.6e-23 114.0 256 75.0
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.8e-22 110.5 254 76.4
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 2.4e-22 110.2 251 66.9
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.4e-22 110.2 259 72.2
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 3.1e-22 109.8 260 78.5
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.9e-22 108.6 267 75.3
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 2.0e-21 107.1 253 74.3
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.4e-21 106.3 266 75.6
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.5e-21 105.9 266 75.2
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 7.6e-21 105.1 268 74.6
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.2e-20 103.6 230 83.0
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.9e-19 100.5 271 73.4
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 7.1e-19 98.6 51 86.3
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 9.3e-19 98.2 63 79.4
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.3e-19 98.2 193 84.5
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 1.6e-18 97.4 215 85.6
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.6e-18 95.9 210 88.6
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.8e-17 94.0 182 85.2
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 3.0e-17 93.2 65 72.3
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 1.5e-16 90.9 191 81.2
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 1.5e-16 90.9 191 81.2
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.5e-16 90.9 191 81.2
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 2.5e-16 90.1 179 86.0
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.5e-16 90.1 64 68.8
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 9.6e-16 88.2 67 68.7
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.3e-15 87.8 50 76.0
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 2.1e-15 87.0 55 80.0
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 3.6e-15 86.3 192 80.7
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.6e-15 86.3 60 73.3
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 6.2e-15 85.5 242 75.6
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 8.1e-15 85.1 254 77.2
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.4e-14 84.3 55 69.1
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.8e-14 84.0 140 81.4
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 3.1e-14 83.2 237 77.6
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 5.3e-14 82.4 50 72.0
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 5.3e-14 82.4 209 85.6
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 6.9e-14 82.0 233 72.5
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.5e-13 80.9 50 70.0
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.0e-13 80.5 265 69.8
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 3.4e-13 79.7 71 62.0
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.7e-12 77.4 52 69.2
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.7e-12 77.4 52 69.2
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 1.7e-12 77.4 57 66.7
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.9e-12 76.6 49 69.4
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 2.9e-12 76.6 49 69.4
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.9e-12 76.6 61 65.6
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 8.4e-12 75.1 50 66.0
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 8.4e-12 75.1 50 66.0
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.1e-11 74.7 51 66.7
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.1e-11 74.7 262 58.8
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 2.4e-11 73.6 232 72.8
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.2e-11 73.2 44 70.5
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 9.3e-11 71.6 51 64.7
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 2.7e-10 70.1 51 64.7
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 2.7e-10 70.1 47 70.2
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 2.7e-10 70.1 47 70.2
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 3.5e-10 69.7 52 63.5
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 4.6e-10 69.3 63 60.3
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 6.0e-10 68.9 39 87.2
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 6.0e-10 68.9 64 59.4
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 7.9e-10 68.6 62 59.7
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.0e-09 68.2 62 59.7
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.9e-08 63.9 58 51.7
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.5e-08 63.5 62 61.3
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 3.3e-08 63.2 61 57.4
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.6e-08 62.4 109 90.8
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 7.4e-08 62.0 58 56.9
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 7.4e-08 62.0 58 56.9
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.6e-07 60.8 59 57.6
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 2.1e-07 60.5 61 54.1
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 2.8e-07 60.1 93 38.7
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 2.8e-07 60.1 62 50.0
ATR0998G002 Amborella trichopoda HOM05D004463 ORTHO05D004724 3.7e-07 59.7 214 79.9
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 3.7e-07 59.7 74 51.4
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.7e-07 59.7 106 91.5
SGA_v2.0_scaffold32G13220 Striga asiatica HOM05D039287 ORTHO05D004724 4.8e-07 59.3 133 78.9
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 8.1e-07 58.5 56 55.4
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 1.8e-06 57.4 66 51.5
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 2.4e-06 57.0 42 66.7
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 3.1e-06 56.6 56 53.6
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 3.1e-06 56.6 59 54.2
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 5.3e-06 55.8 59 54.2
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 5.3e-06 55.8 58 51.7
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 6.9e-06 55.5 56 51.8
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 9.0e-06 55.1 59 54.2
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 9.0e-06 55.1 61 52.5
Nitab4.5_0001370g0080 Nicotiana tabacum HOM05D004463 ORTHO05D004724 9.0e-06 55.1 47 59.6


User provided reference genes

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