Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41963 Davidia involucrata HOM05D000802 ORTHO05D001074 1.5e-50 202.6 106 100.0
Sabra04G0114000 Salix brachista HOM05D000802 ORTHO05D001074 1.4e-16 89.7 49 91.8
Potri.004G171600 Populus trichocarpa HOM05D000802 ORTHO05D001074 5.4e-16 87.8 49 89.8
Cc02_g16410 Coffea canephora HOM05D000802 ORTHO05D001074 1.6e-15 86.3 51 88.2
Dinv04953 Davidia involucrata HOM05D000802 ORTHO05D001074 1.6e-15 86.3 51 88.2
Dinv41967 Davidia involucrata HOM05D000802 ORTHO05D001074 1.6e-15 86.3 51 88.2
Gohir.A12G038300 Gossypium hirsutum HOM05D000802 ORTHO05D001074 1.6e-15 86.3 52 86.5
Gohir.A12G038600 Gossypium hirsutum HOM05D000802 ORTHO05D001074 1.6e-15 86.3 52 86.5
Gohir.D12G033700 Gossypium hirsutum HOM05D000802 ORTHO05D001074 1.6e-15 86.3 52 86.5
Gohir.D12G034000 Gossypium hirsutum HOM05D000802 ORTHO05D001074 1.6e-15 86.3 52 86.5
Gorai.008G034600 Gossypium raimondii HOM05D000802 ORTHO05D001074 1.6e-15 86.3 52 86.5
Gorai.008G035000 Gossypium raimondii HOM05D000802 ORTHO05D001074 1.6e-15 86.3 52 86.5
Actinidia23683 Actinidia chinensis HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
arahy.Tifrunner.gnm1.ann1.C252F7 Arachis hypogaea HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
arahy.Tifrunner.gnm1.ann1.RR6KZ0 Arachis hypogaea HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Cfa005211 Carpinus fangiana HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
CiPaw.05G078900 Carya illinoinensis HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
CiPaw.06G124200 Carya illinoinensis HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
ClCG02G004240 Citrullus lanatus HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Ciclev10030161m.g Citrus clementina HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
COL.COLO4_17293 Corchorus olitorius HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Haze_02184 Corylus avellana HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
MELO3C013370.2 Cucumis melo HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
CsaV3_7G000870 Cucumis sativus L. HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Duzib052G0465 Durio zibethinus HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Duzib248G0272 Durio zibethinus HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Glyma.11G105500 Glycine max HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Glyma.12G030400 Glycine max HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Lj3g0027098 Lotus japonicus HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Lalb_Chr01g0001691 Lupinus albus HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Lalb_Chr19g0139221 Lupinus albus HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Manes.11G082600 Manihot esculenta HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Phvul.011G033400 Phaseolus vulgaris HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
QL11p048558 Quercus lobata HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
QL11p049138 Quercus lobata HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Sed0011951 Sechium edule HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
Thecc.02G064400 Theobroma cacao HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
VMungo1127G0888 Vigna mungo HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
GSVIVG01024062001 Vitis vinifera HOM05D000802 ORTHO05D001074 2.1e-15 85.9 51 88.2
ECA246G2683 Erigeron canadensis HOM05D000802 ORTHO05D001074 4.6e-15 84.7 51 86.3
MD05G1117800 Malus domestica HOM05D000802 ORTHO05D001074 4.6e-15 84.7 51 86.3
MD10G1120800 Malus domestica HOM05D000802 ORTHO05D001074 4.6e-15 84.7 51 86.3
Prupe.8G162300 Prunus persica HOM05D000802 ORTHO05D001074 4.6e-15 84.7 51 86.3
PGR042G3620 Punica granatum HOM05D000802 ORTHO05D001074 4.6e-15 84.7 51 86.3
TWI31G1249 Tripterygium wilfordii HOM05D000802 ORTHO05D001074 4.6e-15 84.7 51 86.3
Oeu006672.1 Olea europaea HOM05D000802 ORTHO05D001074 6.0e-15 84.3 51 86.3
Rhsim11G0190300 Rhododendron simsii HOM05D000802 ORTHO05D001074 6.0e-15 84.3 51 86.3
Sc18g0006610 Simmondsia chinensis HOM05D000802 ORTHO05D001074 6.0e-15 84.3 51 86.3
TAR376G0990 Trochodendron aralioides HOM05D000802 ORTHO05D001074 6.0e-15 84.3 51 86.3
Lj5C183G4 Lonicera japonica HOM05D000802 ORTHO05D001074 7.8e-15 84.0 51 86.3
Potri.009G131200 Populus trichocarpa HOM05D000802 ORTHO05D001074 7.8e-15 84.0 51 86.3
Sabra09G0100700 Salix brachista HOM05D000802 ORTHO05D001074 7.8e-15 84.0 51 86.3
Sabra09G0101500 Salix brachista HOM05D000802 ORTHO05D001074 7.8e-15 84.0 51 86.3
AL3G29540 Arabidopsis lyrata HOM05D000802 ORTHO05D001074 1.0e-14 83.6 51 86.3
AL3G49320 Arabidopsis lyrata HOM05D000802 ORTHO05D001074 1.0e-14 83.6 51 86.3
AT2G16640 Arabidopsis thaliana HOM05D000802 ORTHO05D001074 1.0e-14 83.6 51 86.3
CARHR106860 Cardamine hirsuta HOM05D000802 ORTHO05D001074 1.0e-14 83.6 51 86.3
Thhalv10022525m.g Eutrema salsugineum HOM05D000802 ORTHO05D001074 1.0e-14 83.6 51 86.3
Medtr2g030630 Medicago truncatula HOM05D000802 ORTHO05D001074 1.0e-14 83.6 52 82.7
Psat5g002920 Pisum sativum HOM05D000802 ORTHO05D001074 1.0e-14 83.6 52 82.7
Psat5g002960 Pisum sativum HOM05D000802 ORTHO05D001074 1.0e-14 83.6 52 82.7
Atru.chr5.3268 Acer truncatum HOM05D000802 ORTHO05D001074 1.3e-14 83.2 51 86.3
Actinidia23685 Actinidia chinensis HOM05D000802 ORTHO05D001074 1.3e-14 83.2 51 86.3
Peaxi162Scf00362g00094 Petunia axillaris HOM05D000802 ORTHO05D001074 1.3e-14 83.2 51 86.3
TPR.G27837 Trifolium pratense HOM05D000802 ORTHO05D001074 1.3e-14 83.2 51 84.3
EL10Ac9g21416 Beta vulgaris HOM05D000802 ORTHO05D001074 1.7e-14 82.8 51 84.3
Actinidia00604 Actinidia chinensis HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
Aa31LG2G15650 Aethionema arabicum HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
Aqoxy6G02209 Aquilegia oxysepala HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
BcaB06g25762 Brassica carinata HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
BcaC05g28860 Brassica carinata HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
A05p32920 Brassica napus HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
A05p32930 Brassica napus HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
C05p49640 Brassica napus HOM05D001267 ORTHO05D001323 2.3e-14 82.4 51 84.3
BolC5t33721H Brassica oleracea HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
BolC5t33722H Brassica oleracea HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
BraA05t22117Z Brassica rapa HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
BraA05t22118Z Brassica rapa HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
Carub.0003s3039 Capsella rubella HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
Ca_15308_v3 Cicer arietinum L. HOM05D000802 ORTHO05D001074 2.3e-14 82.4 97 52.6
Hma1.2p1_0032F.1_g019575 Hydrangea macrophylla HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
Rhsim05G0062300 Rhododendron simsii HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
SalBow3G3128 Salvia bowleyana HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
Sp3g30110 Schrenkiella parvula HOM05D000802 ORTHO05D001074 2.3e-14 82.4 51 84.3
CARHR091860 Cardamine hirsuta HOM05D000802 ORTHO05D001074 3.0e-14 82.0 51 84.3
Migut.N01301 Erythranthe guttata HOM05D000802 ORTHO05D001074 3.0e-14 82.0 51 84.3
Eucgr.G01765 Eucalyptus grandis HOM05D000802 ORTHO05D001074 3.0e-14 82.0 51 82.4
Lsat_1_v5_gn_3_45921 Lactuca sativa HOM05D000802 ORTHO05D001074 3.0e-14 82.0 51 82.4
PGSC0003DMG400009579 Solanum tuberosum HOM05D000802 ORTHO05D001074 3.0e-14 82.0 51 84.3
Ah.01g022730 Amaranthus hybridus HOM05D000802 ORTHO05D001074 3.9e-14 81.6 51 84.3
AT3G16620 Arabidopsis thaliana HOM05D000802 ORTHO05D001074 3.9e-14 81.6 50 86.0
CSS0023524 Camellia sinensis var. sinensis HOM05D000802 ORTHO05D001074 3.9e-14 81.6 51 84.3
Carub.0003s1635 Capsella rubella HOM05D000802 ORTHO05D001074 3.9e-14 81.6 51 82.4
Duzib132G0263 Durio zibethinus HOM05D000802 ORTHO05D001074 3.9e-14 81.6 51 84.3
Thhalv10022323m.g Eutrema salsugineum HOM05D000802 ORTHO05D001074 3.9e-14 81.6 51 84.3
HanXRQChr07g0186861 Helianthus annuus HOM05D000802 ORTHO05D001074 3.9e-14 81.6 51 82.4
THA.LOC104804335 Tarenaya hassleriana HOM05D000802 ORTHO05D001074 3.9e-14 81.6 51 84.3
THA.LOC104807274 Tarenaya hassleriana HOM05D000802 ORTHO05D001074 3.9e-14 81.6 51 84.3
TPR.G38520 Trifolium pratense HOM05D000802 ORTHO05D001074 3.9e-14 81.6 52 80.8
AUR62010075 Chenopodium quinoa HOM05D000802 ORTHO05D001074 5.1e-14 81.3 51 84.3
AUR62013067 Chenopodium quinoa HOM05D000802 ORTHO05D001074 5.1e-14 81.3 51 84.3
Ca_01860_v3 Cicer arietinum L. HOM05D000802 ORTHO05D001074 5.1e-14 81.3 52 80.8
Solyc01g111240.4 Solanum lycopersicum HOM05D000802 ORTHO05D001074 5.1e-14 81.3 51 84.3
Sopen01g053310 Solanum pennellii HOM05D000802 ORTHO05D001074 5.1e-14 81.3 51 84.3
PGSC0003DMG400001593 Solanum tuberosum HOM05D000802 ORTHO05D001074 5.1e-14 81.3 51 84.3
MSTRG.5441 Avicennia marina HOM05D000802 ORTHO05D001074 6.6e-14 80.9 51 82.4
CAN.G588.39 Capsicum annuum HOM05D000802 ORTHO05D001074 6.6e-14 80.9 51 84.3
DCAR_022775 Daucus carota HOM05D000802 ORTHO05D001074 6.6e-14 80.9 51 82.4
FvH4_2g01650 Fragaria vesca HOM05D000802 ORTHO05D001074 6.6e-14 80.9 51 82.4
FAN15G0734 Fragaria x ananassa HOM05D000802 ORTHO05D001074 6.6e-14 80.9 51 82.4
FAN20G1707 Fragaria x ananassa HOM05D000802 ORTHO05D001074 6.6e-14 80.9 51 82.4
FAN24G2763 Fragaria x ananassa HOM05D000802 ORTHO05D001074 6.6e-14 80.9 51 82.4
Psat1g166440 Pisum sativum HOM05D000802 ORTHO05D001074 6.6e-14 80.9 52 80.8
RcHm_v2.0_Chr6g0244541 Rosa chinensis HOM05D000802 ORTHO05D001074 6.6e-14 80.9 51 82.4
unitig_52.g17375 Utricularia gibba HOM05D000802 ORTHO05D001074 6.6e-14 80.9 51 82.4
Nn8g41054 Nelumbo nucifera HOM05D000802 ORTHO05D001074 8.6e-14 80.5 51 84.3
SGA_v2.0_scaffold207G41897 Striga asiatica HOM05D000802 ORTHO05D001074 8.6e-14 80.5 51 82.4
Hund00036 Selenicereus undatus HOM05D000802 ORTHO05D001074 1.5e-13 79.7 51 82.4
vmacro17370 Vaccinium macrocarpon HOM05D000802 ORTHO05D001074 1.5e-13 79.7 51 82.4
HanXRQChr15g0479031 Helianthus annuus HOM05D000802 ORTHO05D001074 1.9e-13 79.3 51 80.4
PSO541G3536 Papaver somniferum HOM05D000802 ORTHO05D001074 3.3e-13 78.6 50 84.0
FAN27G2117 Fragaria x ananassa HOM05D000802 ORTHO05D001074 4.3e-13 78.2 51 80.4
Ca_30774_v3 Cicer arietinum L. HOM05D000802 ORTHO05D001074 7.3e-13 77.4 51 78.4
SHI05719 Sapria himalayana HOM05D000802 ORTHO05D001074 7.3e-13 77.4 50 82.0
TAR628G0247 Trochodendron aralioides HOM05D000802 ORTHO05D001074 1.2e-12 76.6 47 85.1
MBI09_g39820_MAGBIO Magnolia biondii HOM05D000802 ORTHO05D001074 2.1e-12 75.9 52 82.7
Solyc11g043010.1 Solanum lycopersicum HOM05D000802 ORTHO05D001074 4.7e-12 74.7 51 74.5
CDE05G2499 Ceratophyllum demersum HOM05D000802 ORTHO05D001074 6.2e-12 74.3 54 77.8
CDE05G3593 Ceratophyllum demersum HOM05D000802 ORTHO05D001074 6.2e-12 74.3 54 77.8
Sopen11g019360 Solanum pennellii HOM05D000802 ORTHO05D001074 8.1e-12 73.9 51 72.5
HPP92_002399 Vanilla planifolia HOM05D000802 ORTHO05D001074 8.1e-12 73.9 51 80.4
ATR0810G228 Amborella trichopoda HOM05D000802 ORTHO05D001074 4.0e-11 71.6 52 76.9
SEGI_19187 Sequoiadendron giganteum HOM05D000802 ORTHO05D001074 5.2e-11 71.2 54 75.9
AagrBONN_evm.TU.Sc2ySwM_368.630 Anthoceros agrestis HOM05D000802 ORTHO05D001074 2.6e-10 68.9 54 72.2
Gohir.A03G203700 Gossypium hirsutum HOM05D000802 ORTHO05D001074 3.4e-10 68.6 51 72.5
Os10g0548800 Oryza sativa ssp. japonica HOM05D000802 ORTHO05D001074 5.8e-10 67.8 50 68.0
Mapoly0063s0085 Marchantia polymorpha HOM05D000802 ORTHO05D001074 9.9e-10 67.0 54 70.4
Actinidia20494 Actinidia chinensis HOM05D000802 ORTHO05D001074 1.7e-09 66.2 51 70.6
Pp3c11_19540 Physcomitrium patens HOM05D000802 ORTHO05D001074 2.9e-09 65.5 50 70.0
SEGI_06882 Sequoiadendron giganteum HOM05D000802 ORTHO05D001074 6.4e-09 64.3 50 70.0
Zm00001eb391770 Zea mays HOM05D000802 ORTHO05D001074 1.1e-08 63.5 61 59.0
Potri.009G131300 Populus trichocarpa HOM05D000802 ORTHO05D001074 1.4e-08 63.2 51 68.6
Sabra09G0101700 Salix brachista HOM05D000802 ORTHO05D001074 1.4e-08 63.2 51 68.6
Pp3c11_19560 Physcomitrium patens HOM05D000802 ORTHO05D001074 1.9e-08 62.8 51 66.7
Pp3c11_19567 Physcomitrium patens HOM05D000802 ORTHO05D001074 1.9e-08 62.8 51 66.7
Pp3c7_3420 Physcomitrium patens HOM05D000802 ORTHO05D001074 2.4e-08 62.4 51 66.7
Zm00001eb022910 Zea mays HOM05D000802 ORTHO05D001074 2.4e-08 62.4 50 64.0
SEGI_03318 Sequoiadendron giganteum HOM05D000802 ORTHO05D001074 3.2e-08 62.0 53 62.3
Sed0016381 Sechium edule HOM05D000802 ORTHO05D001074 5.4e-08 61.2 55 60.0
SMO117G0210 Selaginella moellendorffii HOM05D000802 ORTHO05D001074 1.2e-07 60.1 54 64.8
AagrBONN_evm.TU.Sc2ySwM_228.4401 Anthoceros agrestis HOM05D000802 ORTHO05D001074 4.6e-07 58.2 52 61.5
Pp3c7_3450 Physcomitrium patens HOM05D000802 ORTHO05D001074 4.6e-07 58.2 51 62.7
C03p08470 Brassica napus HOM05D000802 ORTHO05D001074 3.9e-06 55.1 51 62.7


User provided reference genes

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