Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 2.0e-77 292.4 144 100.0
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 4.8e-76 287.7 144 97.9
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 1.8e-75 285.8 143 97.2
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 2.4e-75 285.4 144 96.5
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 3.1e-75 285.0 144 96.5
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 4.1e-75 284.6 144 95.8
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 5.3e-75 284.3 144 96.5
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 5.3e-75 284.3 144 96.5
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 96.5
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 95.8
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 96.5
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 96.5
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 95.1
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 2.7e-74 282.0 142 95.8
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 95.8
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 95.1
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 3.5e-74 281.6 144 95.8
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 3.5e-74 281.6 144 95.1
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 3.5e-74 281.6 144 94.4
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 95.1
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 95.1
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 95.1
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 93.8
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 94.4
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.0e-73 280.0 142 95.1
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 1.0e-73 280.0 142 95.1
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 93.8
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.2e-73 278.9 142 94.4
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 94.4
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 94.4
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.8
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 94.4
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 93.1
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 92.4
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 94.4
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 93.8
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 5.0e-73 277.7 142 93.7
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 5.0e-73 277.7 142 93.7
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 5.0e-73 277.7 142 93.7
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 92.4
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 5.0e-73 277.7 142 93.7
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 93.8
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 93.1
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 93.8
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 93.8
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 93.1
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 93.8
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 93.1
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 1.1e-72 276.6 143 93.0
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 93.1
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 92.4
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 91.0
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 91.7
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.9e-72 275.8 141 95.0
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 2.5e-72 275.4 142 93.0
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 3.2e-72 275.0 144 91.0
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.2e-72 275.0 144 91.0
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 91.0
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 91.7
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 92.4
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 7.2e-72 273.9 144 90.3
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 7.2e-72 273.9 144 93.1
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 91.0
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 1.2e-71 273.1 141 92.9
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.6e-71 272.7 144 90.3
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.1e-71 272.3 144 92.4
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 4.7e-71 271.2 154 89.0
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 4.7e-71 271.2 142 93.0
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 8.0e-71 270.4 141 92.9
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 90.3
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 1.0e-70 270.0 142 92.3
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 2.3e-70 268.9 138 92.8
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 3.0e-70 268.5 144 89.6
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 7.5e-69 263.8 170 78.2
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 7.5e-69 263.8 167 80.2
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 1.3e-68 263.1 140 90.0
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.7e-68 262.7 140 90.7
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.2e-68 262.3 140 88.6
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 2.8e-68 261.9 140 89.3
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 2.8e-68 261.9 140 88.6
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 2.8e-68 261.9 140 88.6
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.7e-68 261.5 137 90.5
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 6.3e-68 260.8 140 88.6
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 8.3e-68 260.4 142 89.4
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 8.3e-68 260.4 138 89.1
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.4e-67 259.6 143 88.1
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.8e-67 259.2 140 88.6
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 1.8e-67 259.2 142 87.3
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 2.4e-67 258.8 141 88.7
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 2.4e-67 258.8 138 87.7
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 86.4
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 1.2e-66 256.5 130 93.8
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 2.0e-66 255.8 140 85.7
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 3.5e-66 255.0 142 85.9
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 5.9e-66 254.2 208 66.3
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 7.7e-66 253.8 140 85.7
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 7.7e-66 253.8 140 85.7
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 84.3
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 84.3
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.8e-65 251.5 140 86.4
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 6.5e-65 250.8 140 86.4
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 6.5e-65 250.8 140 86.4
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 6.5e-65 250.8 140 86.4
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 6.5e-65 250.8 140 86.4
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 4.2e-64 248.1 138 84.1
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 5.5e-64 247.7 168 74.4
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 5.5e-64 247.7 203 65.5
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 5.5e-64 247.7 137 87.6
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.0e-62 243.4 156 79.5
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 3.0e-62 241.9 142 83.8
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 5.2e-62 241.1 138 81.9
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 8.3e-60 233.8 129 86.0
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 3.1e-59 231.9 140 80.0
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 2.0e-58 229.2 144 72.9
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.0e-54 216.9 142 69.7
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.9e-52 208.8 114 86.8
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 2.9e-52 208.8 122 80.3
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 9.2e-51 203.8 136 66.9
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 1.2e-50 203.4 138 63.8
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.6e-50 203.0 160 65.6
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.1e-48 196.8 100 93.0
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 4.3e-48 194.9 97 94.8
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 2.1e-47 192.6 99 92.9
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 7.0e-43 177.6 118 76.3
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 1.1e-32 143.7 74 97.3
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.4e-29 132.1 74 87.8
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 4.4e-29 131.7 74 86.5
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 9.9e-29 130.6 148 46.6
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 1.7e-28 129.8 74 85.1
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 7.8e-26 120.9 140 49.3
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 3.9e-17 92.0 43 97.7
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 7.6e-13 77.8 161 33.5
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.2e-12 76.3 117 37.6
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 3.8e-12 75.5 157 30.6
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 6.4e-12 74.7 53 66.0
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 1.2e-10 70.5 44 75.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.8e-07 59.3 133 29.3
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 8.1e-07 57.8 36 66.7
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 6.9e-06 54.7 83 37.3
CARHR173510 Cardamine hirsuta HOM05D005689 ORTHO05D007060 9.0e-06 54.3 27 88.9


User provided reference genes

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