Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 1.2e-258 896.0 449 100.0
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.4e-182 643.3 453 72.6
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.4e-182 643.3 453 72.6
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 1.9e-179 632.9 447 70.9
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 1.9e-171 606.3 446 67.0
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.2e-168 597.0 441 68.0
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 7.5e-168 594.3 454 67.4
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 6.4e-167 591.3 469 67.0
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 4.7e-162 575.1 448 65.6
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 1.1e-161 573.9 448 65.2
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 5.8e-160 568.2 451 63.2
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 1.7e-159 566.6 446 64.1
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 1.1e-158 563.9 451 64.5
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 6.0e-157 558.1 464 61.2
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 1.3e-156 557.0 453 62.5
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.1e-153 547.4 445 62.2
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 3.1e-153 545.8 445 62.2
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.0e-152 543.1 445 62.2
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.6e-152 542.7 445 62.5
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 5.8e-152 541.6 453 63.1
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 9.9e-152 540.8 452 61.3
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 1.1e-150 537.3 452 61.1
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 1.9e-150 536.6 454 61.2
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.6e-149 533.5 453 58.7
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 2.1e-149 533.1 453 58.9
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 2.3e-148 529.6 427 63.2
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 4.0e-145 518.8 425 60.0
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 4.0e-145 518.8 441 60.3
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 6.9e-145 518.1 430 60.2
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 9.0e-145 517.7 462 59.1
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 4.9e-143 511.9 426 59.2
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.3e-140 503.8 448 58.0
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 4.3e-139 498.8 457 56.2
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 5.6e-139 498.4 446 57.8
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 9.6e-139 497.7 425 59.3
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 2.8e-138 496.1 446 58.5
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 2.8e-138 496.1 429 58.5
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 6.2e-138 495.0 417 59.7
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 9.0e-137 491.1 454 54.4
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 2.0e-136 490.0 421 58.9
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 2.6e-136 489.6 421 58.9
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 2.6e-136 489.6 417 59.7
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 2.6e-136 489.6 417 59.7
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 2.6e-136 489.6 445 56.6
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 3.4e-136 489.2 421 58.9
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 1.7e-135 486.9 417 59.5
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 1.7e-135 486.9 417 59.5
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 2.2e-135 486.5 417 59.7
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 1.1e-134 484.2 450 56.4
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 1.1e-134 484.2 417 58.5
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 1.1e-134 484.2 449 58.1
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 3.2e-134 482.6 434 56.2
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 4.2e-134 482.3 418 58.6
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 1.2e-133 480.7 449 57.5
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 2.7e-133 479.6 418 58.4
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 3.5e-133 479.2 427 57.1
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 4.6e-133 478.8 438 55.5
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 4.6e-133 478.8 427 57.6
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 1.0e-132 477.6 441 56.2
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 1.8e-132 476.9 434 56.2
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 2.3e-132 476.5 443 55.8
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.5e-131 473.8 417 58.5
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 1.4e-129 467.2 426 56.8
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 6.9e-129 464.9 430 55.8
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 6.0e-125 451.8 440 52.5
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.1e-123 447.6 354 63.3
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 7.4e-123 444.9 417 55.2
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.3e-122 444.1 445 54.2
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 4.8e-122 442.2 444 52.3
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 6.2e-122 441.8 419 53.7
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 2.5e-115 419.9 422 50.2
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 5.7e-115 418.7 450 51.1
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 1.1e-113 414.5 446 50.7
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.7e-111 407.1 443 50.6
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 8.5e-111 404.8 448 49.3
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 3.2e-110 402.9 446 50.2
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 3.2e-110 402.9 452 50.2
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 7.2e-110 401.7 450 50.9
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 9.4e-110 401.4 447 49.4
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 1.6e-109 400.6 418 51.4
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 1.6e-109 400.6 452 50.0
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 2.1e-109 400.2 452 50.2
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 1.4e-105 387.5 353 56.9
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 2.0e-104 383.6 434 49.3
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 3.4e-104 382.9 355 56.9
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 1.0e-103 381.3 456 46.7
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 8.5e-103 378.3 429 49.7
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 1.8e-97 360.5 322 58.4
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 2.0e-96 357.1 429 45.9
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 8.5e-95 351.7 453 44.6
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 3.0e-92 343.2 453 42.6
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 5.3e-89 332.4 301 56.5
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 2.3e-76 290.4 419 39.9
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.6e-75 287.0 237 59.1
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 5.4e-73 279.3 300 50.7
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 4.7e-69 266.2 250 52.0
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.4e-65 254.6 218 60.1
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 4.3e-62 243.0 186 63.4
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 5.6e-62 242.7 420 35.5
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 9.2e-57 225.3 422 35.1
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 3.5e-48 196.8 178 51.7
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 3.2e-41 173.7 171 50.9
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.6e-35 154.1 172 47.7
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 4.9e-34 149.8 175 45.1
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 1.2e-32 145.2 430 25.8
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 1.2e-32 145.2 427 25.3
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 1.0e-31 142.1 216 37.0
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.3e-31 141.7 210 41.9
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 3.6e-29 133.7 146 46.6
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 8.1e-29 132.5 139 49.6
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 9.0e-28 129.0 124 50.8
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 9.0e-28 129.0 124 50.8
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 3.8e-26 123.6 144 46.5
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 2.3e-23 114.4 134 47.0
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 3.0e-23 114.0 119 47.9
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 6.6e-23 112.8 124 47.6
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 3.6e-21 107.1 115 47.0
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.3e-18 98.6 138 45.7
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 9.6e-14 82.4 98 45.9
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 1.1e-12 79.0 175 34.9
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 4.0e-12 77.0 105 41.0
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 4.5e-11 73.6 129 31.8
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 1.7e-10 71.6 141 34.8
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 2.9e-10 70.9 91 39.6
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.8e-10 70.5 91 38.5
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.9e-09 68.2 103 35.9
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 2.5e-09 67.8 251 23.5
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 2.1e-08 64.7 91 37.4
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 2.1e-08 64.7 99 35.4
MSTRG.21699 Avicennia marina HOM05D004127 ORTHO05D005119 2.7e-08 64.3 91 35.2
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 2.7e-08 64.3 91 34.1
Os12g0562300 Oryza sativa ssp. japonica HOM05D004127 ORTHO05D005119 2.7e-08 64.3 239 22.6
Aqoxy2G02720 Aquilegia oxysepala HOM05D004127 ORTHO05D005119 3.5e-08 63.9 91 31.9
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 3.5e-08 63.9 110 31.8
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 3.5e-08 63.9 110 32.7
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 4.6e-08 63.5 91 36.3
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 4.6e-08 63.5 101 30.7
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 6.0e-08 63.2 91 34.1
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 7.9e-08 62.8 239 22.2
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 1.0e-07 62.4 110 30.9
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 1.0e-07 62.4 91 34.1
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.0e-07 62.4 239 22.6
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 1.3e-07 62.0 110 31.8
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.3e-07 62.0 239 22.6
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 2.3e-07 61.2 110 32.7
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 3.0e-07 60.8 91 34.1
Haze_03379 Corylus avellana HOM05D001269 ORTHO05D001083 3.9e-07 60.5 94 42.6
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 3.9e-07 60.5 110 31.8
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 3.9e-07 60.5 110 31.8
vmacro15103 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 3.9e-07 60.5 91 33.0
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 5.1e-07 60.1 91 35.2
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 5.1e-07 60.1 110 31.8
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 8.7e-07 59.3 92 32.6
arahy.Tifrunner.gnm1.ann1.L9KWYC Arachis hypogaea HOM05D006294 ORTHO05D007668 1.1e-06 58.9 78 35.9
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 1.5e-06 58.5 99 32.3
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 1.5e-06 58.5 110 30.9
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 1.5e-06 58.5 91 30.8
CDE08G0979 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 1.9e-06 58.2 91 30.8
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.9e-06 58.2 109 31.2
CDE02G4605 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 2.5e-06 57.8 91 30.8
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.3e-06 57.4 250 20.8
Mapoly0154s0039 Marchantia polymorpha HOM05D004127 ORTHO05D005119 4.3e-06 57.0 99 30.3
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 4.3e-06 57.0 95 33.7
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 4.3e-06 57.0 110 30.0
CAN.G141.7 Capsicum annuum HOM05D000001 ORTHO05D009726 5.7e-06 56.6 118 27.1
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 7.4e-06 56.2 129 28.7
HPP92_004920 Vanilla planifolia HOM05D006294 ORTHO05D007668 7.4e-06 56.2 62 43.5


User provided reference genes

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