Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.7e-242 843.2 814 100.0
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 1.5e-145 521.2 875 73.3
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 1.4e-124 451.4 876 71.8
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 1.6e-123 448.0 880 72.5
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.1e-123 447.6 875 70.4
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 3.0e-114 417.2 880 69.3
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 9.0e-111 405.6 873 68.2
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 2.9e-109 400.6 868 68.5
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 1.1e-108 398.7 872 67.0
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 1.6e-107 394.8 875 70.5
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 3.5e-107 393.7 872 70.2
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 6.0e-107 392.9 875 64.1
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 1.8e-106 391.3 872 70.8
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 1.5e-105 388.3 874 69.8
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 3.7e-104 383.6 875 63.8
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 3.7e-104 383.6 874 62.7
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 2.0e-102 377.9 880 64.1
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.1e-100 372.1 868 69.0
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 5.5e-100 369.8 880 68.5
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 3.5e-99 367.1 893 64.8
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 3.3e-97 360.5 877 68.6
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 2.8e-96 357.5 868 68.3
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 6.3e-96 356.3 875 68.9
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 1.0e-93 349.0 881 64.0
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 2.2e-93 347.8 876 68.4
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 5.5e-92 343.2 880 64.1
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 1.6e-91 341.7 878 66.5
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 2.1e-91 341.3 880 66.4
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 4.6e-91 340.1 877 63.3
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 5.1e-90 336.7 871 64.8
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 1.5e-89 335.1 876 66.2
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 7.4e-89 332.8 878 62.6
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.3e-88 332.0 873 66.1
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 1.7e-88 331.6 870 66.7
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 8.2e-88 329.3 880 59.9
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 2.4e-87 327.8 881 58.2
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 3.1e-87 327.4 877 64.0
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 3.4e-86 323.9 880 62.8
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 7.7e-86 322.8 880 59.9
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 1.7e-85 321.6 879 57.1
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 3.8e-85 320.5 878 65.5
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.4e-84 318.5 872 64.0
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 7.2e-84 316.2 878 65.3
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 7.2e-84 316.2 878 65.1
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 9.4e-84 315.8 870 66.8
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.7e-83 314.3 872 63.8
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 6.1e-83 313.2 874 65.1
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 7.9e-83 312.8 883 56.5
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 7.9e-83 312.8 872 63.6
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 1.0e-82 312.4 883 60.5
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 2.3e-82 311.2 878 59.9
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 3.0e-82 310.8 875 57.7
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 3.0e-82 310.8 875 57.7
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 5.1e-82 310.1 886 52.3
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 8.8e-82 309.3 881 56.8
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 1.1e-81 308.9 889 54.7
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 2.6e-81 307.8 445 46.7
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 1.3e-80 305.4 872 59.7
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 1.7e-80 305.1 879 62.9
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 3.7e-80 303.9 871 65.2
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 8.2e-80 302.8 874 57.6
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 1.1e-79 302.4 874 62.5
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 9.1e-79 299.3 312 52.9
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 4.5e-78 297.0 875 61.1
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 5.9e-78 296.6 876 65.1
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.3e-77 295.4 366 52.2
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 2.9e-77 294.3 875 63.0
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 2.5e-76 291.2 875 54.6
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 1.2e-75 288.9 876 63.7
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 1.2e-75 288.9 869 65.5
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 2.7e-75 287.7 366 51.6
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.4e-74 285.4 836 64.2
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.8e-74 285.0 366 51.1
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 5.2e-74 283.5 887 61.1
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 5.2e-74 283.5 881 63.0
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.1e-73 282.3 858 58.2
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.6e-70 271.9 836 63.6
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.6e-70 271.2 802 58.1
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 4.2e-68 263.8 884 57.8
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 6.1e-67 260.0 898 53.1
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 8.0e-67 259.6 880 61.8
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 1.5e-65 255.4 785 68.8
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 7.7e-62 243.0 364 44.5
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 6.5e-61 240.0 880 60.6
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 2.1e-59 235.0 383 43.1
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 2.1e-59 235.0 378 42.3
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.5e-57 228.8 803 65.9
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 2.6e-57 228.0 879 53.6
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 6.3e-56 223.4 368 43.8
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 7.2e-52 209.9 858 57.5
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 6.3e-48 196.8 180 53.3
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 1.1e-47 196.1 838 57.3
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 4.9e-40 170.6 389 34.4
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 1.1e-39 169.5 387 37.2
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 8.6e-37 159.8 392 34.9
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 1.6e-35 155.6 192 42.7
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 2.8e-35 154.8 745 66.0
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 3.6e-35 154.5 356 33.4
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 2.4e-31 141.7 265 43.8
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.1e-30 138.7 154 54.5
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 6.6e-29 133.7 149 47.7
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 7.3e-28 130.2 394 33.2
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.0e-25 122.1 146 45.9
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.9e-20 105.5 102 53.9
Gohir.D02G039033 Gossypium hirsutum HOM05D063522 ORTHO05D019476 4.0e-18 97.8 172 37.8
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 6.8e-18 97.1 97 53.6
Gorai.005G043000 Gossypium raimondii HOM05D063522 ORTHO05D019476 6.4e-16 90.5 194 33.5
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 9.2e-15 86.7 140 35.0
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.6e-14 85.9 118 44.9
Gorai.010G128600 Gossypium raimondii HOM05D024651 ORTHO05D019476 7.3e-12 77.0 146 32.2
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 2.4e-07 62.0 64 48.4
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 1.2e-06 59.7 213 34.7
Peaxi162Scf00294g00111 Petunia axillaris HOM05D000424 ORTHO05D000355 1.2e-06 59.7 179 38.0
RcHm_v2.0_Chr4g0408211 Rosa chinensis HOM05D008684 ORTHO05D010796 2.1e-06 58.9 264 23.9
AUR62044184 Chenopodium quinoa HOM05D000891 ORTHO05D000761 3.5e-06 58.2 208 24.0
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 7.8e-06 57.0 230 27.0


User provided reference genes

Program Settings