Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.2e-92 343.2 171 100.0
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.9e-43 178.3 167 64.1
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 3.2e-42 175.6 166 63.3
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 7.1e-42 174.5 165 60.0
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 9.3e-42 174.1 165 61.2
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.2e-41 173.7 164 59.8
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.6e-41 171.8 165 59.4
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 7.8e-41 171.0 164 59.1
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.0e-40 169.1 167 61.1
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.6e-40 167.9 150 62.7
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 6.6e-40 167.9 150 62.7
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.1e-39 167.2 164 57.9
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.5e-39 166.8 173 59.0
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 9.6e-39 164.1 173 60.1
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 1.6e-38 163.3 152 61.2
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 2.1e-38 162.9 148 64.2
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.6e-38 162.2 167 58.7
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.4e-37 159.5 126 68.3
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.4e-37 159.5 169 58.0
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.2e-36 157.1 128 67.2
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 2.6e-36 156.0 165 55.8
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 3.4e-36 155.6 154 63.6
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 2.9e-35 152.5 166 56.6
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 2.9e-35 152.5 166 57.2
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 3.8e-35 152.1 152 59.2
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 6.4e-35 151.4 176 55.1
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 2.4e-34 149.4 157 57.3
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 9.3e-34 147.5 160 57.5
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 2.7e-33 146.0 144 59.7
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 2.7e-33 146.0 131 62.6
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.7e-33 146.0 190 50.5
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 2.7e-33 146.0 150 60.0
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 7.8e-33 144.4 151 58.3
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 2.3e-32 142.9 153 56.2
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 3.0e-32 142.5 151 58.3
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 3.9e-32 142.1 130 63.1
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.1e-32 141.7 155 56.1
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 5.1e-32 141.7 134 61.2
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 5.1e-32 141.7 150 56.7
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 5.1e-32 141.7 150 56.7
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 8.7e-32 141.0 137 60.6
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.5e-31 140.2 168 56.0
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 2.5e-31 139.4 174 50.0
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 9.6e-31 137.5 137 59.1
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 9.6e-31 137.5 161 48.4
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.6e-30 136.7 151 57.0
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 1.6e-30 136.7 168 51.2
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 1.6e-30 136.7 150 50.7
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 2.1e-30 136.3 159 50.9
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 2.8e-30 136.0 167 51.5
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 2.8e-30 136.0 162 48.1
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 4.8e-30 135.2 140 57.9
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 4.8e-30 135.2 148 53.4
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 8.1e-30 134.4 168 50.6
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 1.4e-29 133.7 148 56.1
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 3.1e-29 132.5 171 46.8
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 5.3e-29 131.7 168 52.4
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 5.3e-29 131.7 151 57.0
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 6.9e-29 131.3 171 46.2
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 1.5e-28 130.2 171 45.6
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 2.6e-28 129.4 157 50.3
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.3e-27 127.1 154 52.6
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 1.3e-27 127.1 95 66.3
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.7e-27 126.7 168 48.8
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.7e-27 126.7 132 56.1
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 2.2e-27 126.3 136 57.4
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 2.2e-27 126.3 164 48.2
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 6.4e-27 124.8 158 50.6
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 1.1e-26 124.0 70 75.7
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.1e-26 124.0 128 57.0
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.4e-26 123.6 169 49.1
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.9e-26 123.2 153 51.0
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.9e-26 123.2 144 52.8
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 2.4e-26 122.9 148 51.4
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 4.2e-26 122.1 161 49.1
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.2e-25 120.6 142 51.4
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 3.5e-25 119.0 126 57.1
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 6.0e-25 118.2 150 50.0
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.3e-24 117.1 145 51.7
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 2.3e-24 116.3 128 53.9
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 3.3e-23 112.5 123 52.0
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 5.6e-23 111.7 142 48.6
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 7.4e-23 111.3 132 49.2
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 7.4e-23 111.3 121 53.7
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 7.4e-23 111.3 130 55.4
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.6e-22 110.2 110 56.4
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 3.7e-22 109.0 128 51.6
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 3.7e-22 109.0 128 51.6
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 3.7e-22 109.0 121 52.1
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 4.8e-22 108.6 57 89.5
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 4.8e-22 108.6 150 45.3
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 8.1e-22 107.8 148 44.6
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 8.1e-22 107.8 100 65.0
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 1.4e-21 107.1 56 89.3
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.4e-21 106.3 139 46.8
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.4e-21 106.3 140 40.7
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 4.0e-21 105.5 147 44.9
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 5.3e-21 105.1 128 55.5
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 6.9e-21 104.8 139 46.0
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.5e-20 103.6 147 44.2
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 1.5e-20 103.6 147 44.2
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 2.0e-20 103.2 147 43.5
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 3.4e-20 102.4 142 45.8
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 5.8e-20 101.7 140 47.1
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 7.6e-20 101.3 134 47.8
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 7.6e-20 101.3 134 47.8
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 7.6e-20 101.3 130 51.5
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.0e-19 100.9 121 49.6
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.7e-19 100.1 111 46.8
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 2.2e-19 99.8 160 45.0
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 2.2e-19 99.8 77 58.4
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 2.2e-19 99.8 114 50.0
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 3.8e-19 99.0 141 50.4
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.9e-18 96.7 128 47.7
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.5e-18 96.3 127 49.6
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 2.5e-18 96.3 67 62.7
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 2.7e-17 92.8 136 44.1
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 4.6e-17 92.0 113 46.9
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.3e-16 90.5 132 41.7
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 8.7e-16 87.8 48 75.0
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 2.1e-14 83.2 126 45.2
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 2.1e-14 83.2 56 64.3
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 5.3e-13 78.6 147 40.8
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 1.2e-12 77.4 138 42.8
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 1.5e-12 77.0 143 40.6
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 3.4e-12 75.9 138 42.0
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 3.4e-12 75.9 138 42.0
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 3.4e-12 75.9 138 42.0
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 2.2e-11 73.2 138 40.6
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 2.9e-11 72.8 148 40.5
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 6.5e-11 71.6 142 31.0
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.4e-10 70.5 146 40.4
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 7.9e-09 64.7 114 42.1
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.3e-08 63.9 122 37.7
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.8e-08 63.5 146 39.7
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.3e-08 63.2 123 35.0
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 9.7e-07 57.8 108 32.4
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 9.7e-07 57.8 80 37.5


User provided reference genes

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