Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 3.4e-129 465.7 379 100.0
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 1.1e-45 188.3 426 54.9
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 8.9e-45 185.3 331 64.4
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 1.3e-43 181.4 364 61.5
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 1.9e-42 177.6 298 68.1
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 5.4e-42 176.0 298 68.1
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 2.1e-41 174.1 399 58.4
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 2.7e-41 173.7 299 67.9
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 1.3e-40 171.4 299 67.6
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.7e-40 171.0 299 67.6
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 1.7e-40 171.0 299 66.9
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 8.6e-40 168.7 337 62.9
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.1e-39 168.3 299 67.9
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 1.5e-39 167.9 304 55.3
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 2.5e-39 167.2 298 67.1
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 7.3e-39 165.6 302 69.2
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 9.5e-39 165.2 304 62.8
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.2e-38 164.9 304 64.8
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 1.2e-38 164.9 301 65.1
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 2.1e-38 164.1 304 64.8
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 6.2e-38 162.5 302 68.9
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 1.8e-37 161.0 300 67.7
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 5.2e-37 159.5 313 63.3
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 6.8e-37 159.1 306 64.4
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 8.9e-37 158.7 308 64.0
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.2e-36 158.3 339 61.1
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 2.6e-36 157.1 299 61.2
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 2.6e-36 157.1 319 58.3
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 4.4e-36 156.4 313 62.6
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 7.5e-36 155.6 310 63.2
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 7.5e-36 155.6 303 51.8
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 9.9e-36 155.2 304 56.9
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 2.2e-35 154.1 310 61.6
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 4.9e-35 152.9 338 62.7
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 6.4e-35 152.5 319 60.8
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 8.3e-35 152.1 276 67.0
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 1.4e-34 151.4 317 59.6
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 1.4e-34 151.4 304 62.5
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 1.9e-34 151.0 237 75.1
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 4.1e-34 149.8 317 59.3
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 4.1e-34 149.8 303 63.7
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 4.1e-34 149.8 305 60.7
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 4.1e-34 149.8 295 65.1
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 9.2e-34 148.7 319 59.2
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 9.2e-34 148.7 321 59.5
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 1.2e-33 148.3 308 61.0
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.6e-33 147.9 223 80.3
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 2.7e-33 147.1 308 61.0
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 2.7e-33 147.1 307 63.5
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 3.5e-33 146.7 310 61.3
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 6.0e-33 146.0 320 56.9
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 6.0e-33 146.0 217 81.6
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 1.0e-32 145.2 306 56.5
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 2.3e-32 144.1 316 64.2
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 5.1e-32 142.9 290 61.7
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 6.6e-32 142.5 274 66.8
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 6.6e-32 142.5 304 57.6
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 6.6e-32 142.5 243 69.1
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.5e-31 141.4 300 62.0
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 1.9e-31 141.0 303 58.4
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 1.9e-31 141.0 305 56.7
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.9e-31 141.0 208 82.7
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.9e-31 141.0 259 61.4
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 1.9e-31 141.0 236 72.5
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 1.9e-31 141.0 304 58.6
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 2.5e-31 140.6 304 59.2
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 3.3e-31 140.2 252 70.2
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 4.3e-31 139.8 187 84.5
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 5.6e-31 139.4 303 64.0
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 9.5e-31 138.7 336 57.7
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 2.1e-30 137.5 301 59.8
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 2.8e-30 137.1 305 55.4
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 4.7e-30 136.3 243 65.8
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 8.1e-30 135.6 271 67.2
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 1.1e-29 135.2 305 59.3
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 1.4e-29 134.8 305 59.7
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 2.4e-29 134.0 303 58.1
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 2.4e-29 134.0 310 62.3
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 2.4e-29 134.0 384 43.0
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 2.4e-29 134.0 187 85.6
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 3.1e-29 133.7 237 63.7
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 4.0e-29 133.3 173 50.3
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 1.2e-28 131.7 236 69.5
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 1.2e-28 131.7 385 42.6
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 3.4e-28 130.2 187 88.8
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 3.4e-28 130.2 303 55.4
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 4.4e-28 129.8 309 57.3
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 2.2e-27 127.5 304 57.6
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 2.2e-27 127.5 335 53.7
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 3.8e-27 126.7 304 57.9
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 2.4e-26 124.0 259 67.6
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 4.2e-26 123.2 328 54.3
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 9.2e-26 122.1 184 78.3
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 1.6e-25 121.3 303 54.5
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 2.1e-25 120.9 306 58.8
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 7.8e-25 119.0 295 60.0
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 1.7e-24 117.9 310 31.9
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 5.6e-23 112.8 306 59.5
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 1.2e-22 111.7 225 48.9
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 2.8e-22 110.5 234 67.5
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 1.4e-21 108.2 173 44.5
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 1.4e-21 108.2 303 58.7
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 2.4e-21 107.5 86 66.3
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 3.1e-21 107.1 56 92.9
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.5e-20 104.8 135 53.3
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.0e-20 104.4 98 64.3
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 2.6e-20 104.0 306 60.1
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 2.6e-20 104.0 304 58.6
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 3.8e-19 100.1 163 41.7
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 3.8e-19 100.1 192 76.0
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 4.9e-19 99.8 147 46.9
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 2.4e-18 97.4 257 61.9
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.6e-17 94.7 172 57.0
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 1.3e-16 91.7 153 43.1
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 5.3e-13 79.7 83 48.2
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 2.0e-12 77.8 83 48.2
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 2.6e-12 77.4 83 47.0
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 1.3e-11 75.1 36 100.0
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 8.4e-11 72.4 76 48.7
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 8.4e-11 72.4 76 48.7
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 3.2e-10 70.5 83 45.8
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 9.3e-10 68.9 83 42.2
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 1.2e-09 68.6 83 45.8
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.1e-09 67.8 79 41.8
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 2.7e-09 67.4 88 42.0
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.5e-09 67.0 75 44.0
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 4.6e-09 66.6 101 37.6
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 7.9e-09 65.9 83 42.2
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.0e-08 65.5 75 42.7
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-08 64.3 75 42.7
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 3.0e-08 63.9 75 41.3
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 3.9e-08 63.5 91 40.7
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 6.7e-08 62.8 78 43.6
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 8.7e-08 62.4 75 41.3
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.7e-08 62.4 75 41.3
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 8.7e-08 62.4 106 35.8
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 8.7e-08 62.4 76 42.1
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 8.7e-08 62.4 43 72.1
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 1.1e-07 62.0 109 35.8
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 1.9e-07 61.2 35 85.7
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 3.3e-07 60.5 76 39.5
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.1e-06 57.8 48 52.1
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 2.1e-06 57.8 76 39.5
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 2.1e-06 57.8 101 34.7
Actinidia17724 Actinidia chinensis HOM05D002804 ORTHO05D003755 2.8e-06 57.4 75 37.3
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 2.8e-06 57.4 151 31.1
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 2.8e-06 57.4 76 39.5
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.8e-06 57.4 146 74.7
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 6.2e-06 56.2 101 33.7
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 6.2e-06 56.2 101 33.7


User provided reference genes

Program Settings