Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 4.3e-235 817.8 457 100.0
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 2.9e-114 416.4 461 57.7
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 7.3e-110 401.7 461 56.8
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 9.5e-110 401.4 462 62.8
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 8.1e-109 398.3 457 56.7
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 4.0e-108 396.0 463 55.7
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 1.5e-107 394.0 462 58.0
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 1.3e-106 391.0 444 58.1
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 2.2e-106 390.2 472 62.7
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 8.3e-106 388.3 467 57.8
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 1.2e-104 384.4 457 59.3
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 3.0e-103 379.8 466 56.2
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 2.1e-101 373.6 461 57.5
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 2.4e-100 370.2 447 57.0
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 4.0e-100 369.4 463 56.4
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 7.6e-99 365.2 454 56.6
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 1.9e-97 360.5 454 55.1
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 3.2e-97 359.8 464 55.4
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 2.1e-96 357.1 460 53.5
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 3.9e-95 352.8 464 56.0
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 6.6e-95 352.1 467 57.0
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 1.5e-91 340.9 472 57.4
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.4e-91 339.7 472 57.0
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 5.8e-91 339.0 472 55.1
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 5.8e-91 339.0 470 53.4
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 9.9e-91 338.2 477 53.7
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 1.3e-90 337.8 460 50.4
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.7e-90 337.4 474 57.4
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 9.3e-89 331.6 447 55.3
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 2.1e-88 330.5 479 49.9
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 7.8e-88 328.6 413 57.6
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 1.9e-86 323.9 457 51.2
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 2.1e-85 320.5 465 49.2
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 2.2e-82 310.5 445 51.0
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.2e-82 310.5 460 47.8
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 2.9e-82 310.1 460 47.8
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 6.4e-82 308.9 458 49.8
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 2.4e-81 307.0 445 51.9
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 4.2e-81 306.2 438 53.4
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 2.3e-79 300.4 460 51.5
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.0e-79 300.1 460 47.0
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 3.9e-79 299.7 461 48.8
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.9e-78 297.4 461 46.4
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 3.3e-78 296.6 445 52.8
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 7.4e-78 295.4 343 53.6
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 2.1e-77 293.9 491 49.9
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.8e-77 293.5 421 47.3
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 8.1e-77 292.0 426 49.3
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 1.8e-76 290.8 442 48.4
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.2e-75 288.1 492 45.3
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 1.5e-75 287.7 423 50.6
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 3.4e-75 286.6 424 51.7
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 3.8e-74 283.1 487 49.7
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 4.2e-73 279.6 445 49.0
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 2.7e-72 276.9 435 50.1
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 2.1e-69 267.3 443 45.1
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 6.5e-66 255.8 374 51.1
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 2.1e-64 250.8 488 45.1
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 3.3e-62 243.4 440 41.8
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 7.4e-62 242.3 434 50.7
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.1e-60 238.4 387 43.7
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 5.0e-58 229.6 460 38.9
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 2.5e-57 227.3 428 43.9
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 5.5e-57 226.1 447 41.8
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 5.5e-57 226.1 336 45.8
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 1.2e-56 224.9 323 47.1
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 1.0e-55 221.9 486 39.1
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 2.3e-55 220.7 424 44.8
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 5.1e-55 219.5 463 40.2
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 6.7e-55 219.2 383 42.8
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 1.3e-53 214.9 452 41.6
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 5.3e-52 209.5 475 35.2
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 7.7e-51 205.7 370 51.1
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 1.9e-49 201.1 376 46.5
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.8e-47 194.5 424 39.9
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.3e-47 194.1 457 35.7
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 7.4e-46 189.1 479 39.2
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.7e-45 186.8 371 36.1
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 4.8e-45 186.4 446 41.5
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 2.4e-44 184.1 433 39.5
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 7.0e-44 182.6 441 40.4
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 9.1e-44 182.2 444 34.2
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 1.5e-43 181.4 447 38.7
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 7.7e-43 179.1 425 39.5
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 1.9e-41 174.5 452 34.7
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 1.9e-41 174.5 252 44.8
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 9.4e-41 172.2 183 55.7
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 4.7e-40 169.9 477 37.1
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.1e-38 165.2 443 32.7
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 3.7e-37 160.2 370 36.5
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 5.3e-36 156.4 428 35.5
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 5.9e-35 152.9 136 62.5
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 8.5e-34 149.1 368 33.7
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.9e-33 147.9 442 30.5
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 3.2e-33 147.1 283 45.6
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 5.5e-33 146.4 123 61.8
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 5.5e-33 146.4 305 37.7
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 3.6e-32 143.7 149 63.8
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 5.7e-30 136.3 147 64.6
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 1.3e-29 135.2 441 31.7
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 6.3e-29 132.9 397 32.0
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 1.6e-24 118.2 361 34.6
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 1.6e-24 118.2 361 34.6
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 2.7e-24 117.5 361 34.6
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 6.1e-24 116.3 363 37.7
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 6.1e-24 116.3 361 35.2
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 6.1e-24 116.3 361 35.2
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 1.8e-23 114.8 361 34.6
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 1.8e-23 114.8 361 34.6
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.8e-23 114.8 343 31.5
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 4.4e-22 110.2 119 51.3
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 5.7e-22 109.8 382 30.1
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 9.8e-22 109.0 360 33.9
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 9.8e-22 109.0 360 31.1
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 9.8e-22 109.0 414 30.9
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.7e-21 108.2 315 31.7
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 3.7e-21 107.1 358 31.8
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 2.4e-20 104.4 362 40.1
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 2.4e-20 104.4 362 40.1
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 4.5e-19 100.1 364 35.7
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 4.5e-19 100.1 337 30.9
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 1.3e-18 98.6 359 34.3
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.3e-18 98.6 363 39.9
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 2.3e-18 97.8 362 40.1
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 2.3e-18 97.8 362 40.1
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 1.5e-17 95.1 359 35.9
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 1.5e-17 95.1 442 27.6
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 2.5e-17 94.4 336 31.8
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 4.2e-17 93.6 362 30.9
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 1.6e-16 91.7 338 30.8
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 2.8e-16 90.9 125 50.4
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 3.6e-16 90.5 448 28.8
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.4e-15 88.6 339 28.6
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 2.3e-15 87.8 440 31.8
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.0e-14 84.7 198 40.4
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.4e-14 84.0 387 30.5
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 7.5e-14 82.8 180 37.8
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 8.3e-13 79.3 46 91.3
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 1.4e-12 78.6 379 30.6
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 3.1e-12 77.4 161 38.5
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 3.1e-12 77.4 456 26.8
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 7.0e-12 76.3 177 36.2
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 2.7e-11 74.3 324 28.7
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 7.8e-11 72.8 157 40.8
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 2.3e-07 61.2 44 56.8


User provided reference genes

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