Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 0.0e+00 1478.4 1022 100.0
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 0.0e+00 1177.5 1075 77.2
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.2e-309 1066.6 1032 81.0
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.5e-296 1023.1 1022 78.1
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.0e-273 945.3 1020 75.2
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 4.2e-267 925.2 938 75.7
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 5.5e-267 924.9 1049 72.8
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 5.7e-264 914.8 1055 72.0
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.3e-263 913.7 949 77.9
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.8e-262 909.8 1032 66.9
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 5.0e-260 901.7 1033 68.4
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 8.6e-260 901.0 1036 69.1
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.0e-257 894.0 1037 70.0
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 6.8e-257 891.3 1051 71.6
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.2e-256 890.6 1040 68.7
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 2.0e-253 879.8 1056 70.7
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 7.8e-253 877.9 1052 72.2
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.3e-252 877.1 1028 70.0
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.0e-252 875.2 1003 74.0
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 6.6e-252 874.8 1034 70.5
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 9.5e-251 870.9 1003 73.9
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 3.1e-249 865.9 1037 71.0
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 4.4e-248 862.1 1108 65.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.2e-247 859.8 1023 67.6
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.2e-246 855.9 1023 64.3
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.6e-245 853.6 1026 64.9
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 7.8e-245 851.3 954 74.0
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 7.8e-245 851.3 1047 67.1
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 6.6e-244 848.2 1040 68.9
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 2.8e-242 842.8 1020 66.1
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.8e-241 840.1 1020 66.0
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 5.2e-241 838.6 826 83.4
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 8.9e-241 837.8 1035 66.3
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 2.1e-237 826.6 928 76.2
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.0e-236 822.8 1037 69.8
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 5.1e-236 822.0 1050 64.6
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 6.6e-236 821.6 918 71.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.8e-234 816.2 1026 69.0
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.2e-234 815.1 1026 69.0
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 3.1e-233 812.8 1036 68.6
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.0e-233 812.4 1035 60.1
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 1.5e-232 810.4 1016 62.3
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 3.7e-231 805.8 913 75.4
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.4e-230 803.1 1043 68.2
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 4.6e-229 798.9 1043 65.0
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.6e-229 798.9 1024 68.7
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 9.6e-227 791.2 938 71.9
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 9.6e-227 791.2 847 75.1
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 1.2e-226 790.8 915 74.3
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.2e-226 790.8 1042 67.9
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 3.6e-226 789.3 883 71.0
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 5.2e-225 785.4 1027 68.8
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.8e-224 781.9 910 73.0
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 2.2e-223 780.0 1053 67.7
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 2.2e-223 780.0 1033 66.2
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 2.4e-222 776.5 1018 63.7
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 1.2e-221 774.2 1051 65.2
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 7.8e-221 771.5 912 70.3
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.0e-220 771.2 1062 64.5
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.3e-220 770.0 910 72.2
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 8.7e-220 768.1 915 72.8
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.3e-219 766.1 910 71.4
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 4.3e-219 765.8 1031 66.4
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 7.3e-219 765.0 1023 66.8
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.6e-218 763.8 918 72.5
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.8e-218 762.3 1003 67.9
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.2e-218 761.9 1026 65.6
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 1.2e-216 757.7 1039 65.3
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.2e-216 757.7 851 72.7
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.0e-216 756.9 1047 65.3
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.4e-216 756.1 907 71.3
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.7e-215 753.8 834 77.5
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 4.9e-215 752.3 879 73.8
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 6.4e-215 751.9 899 73.0
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 5.4e-214 748.8 890 71.0
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 2.1e-213 746.9 1031 65.2
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 5.1e-212 742.3 832 73.9
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.6e-210 737.3 863 75.4
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 2.8e-210 736.5 1067 64.6
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 6.9e-209 731.9 895 71.4
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 2.9e-207 726.5 892 71.1
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 4.2e-206 722.6 1035 59.1
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 6.0e-205 718.8 1024 64.9
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 6.7e-204 715.3 904 68.7
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 3.3e-203 713.0 925 69.6
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 4.8e-202 709.1 936 66.8
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.5e-200 704.1 880 71.5
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 5.8e-200 702.2 839 71.9
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 3.8e-199 699.5 940 65.6
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 7.1e-198 695.3 1050 59.4
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 7.1e-198 695.3 936 68.1
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 4.6e-197 692.6 946 64.4
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 7.9e-197 691.8 951 64.2
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.0e-196 691.4 1024 62.3
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 3.4e-192 676.4 1023 60.7
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 5.8e-192 675.6 837 63.0
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 2.2e-191 673.7 1038 61.6
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 7.2e-190 668.7 1015 54.5
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.7e-189 666.8 879 67.9
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 6.1e-189 665.6 907 66.6
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.3e-188 664.5 1024 61.6
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.3e-187 659.8 911 63.3
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 5.3e-185 652.5 843 71.6
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 6.9e-185 652.1 807 71.5
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.3e-183 647.9 1030 60.3
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.7e-183 647.5 1027 60.7
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 2.2e-183 647.1 1033 59.3
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 8.5e-183 645.2 899 66.1
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 1.4e-182 644.4 901 66.4
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 1.4e-182 644.4 914 62.5
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 1.9e-182 644.0 892 66.7
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.2e-182 642.9 885 64.7
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 1.6e-181 641.0 1023 60.6
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 2.7e-181 640.2 1003 60.3
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.0e-180 638.3 892 66.1
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.0e-180 638.3 899 65.9
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 3.0e-180 636.7 897 66.0
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 5.7e-179 632.5 1024 60.1
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 6.9e-177 625.5 860 69.7
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 2.2e-175 620.5 1021 59.6
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 3.0e-172 610.1 793 66.8
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 4.4e-171 606.3 921 65.5
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 3.5e-168 596.7 806 62.7
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.3e-167 594.7 856 65.1
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 1.9e-166 590.9 807 62.8
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 2.5e-166 590.5 806 62.2
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 2.5e-166 590.5 806 62.2
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.2e-165 588.2 806 62.8
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.3e-164 583.9 842 55.6
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 3.0e-164 583.6 960 53.5
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 4.4e-163 579.7 1022 51.4
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.7e-160 570.5 741 65.5
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 2.6e-155 553.9 939 58.3
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 3.1e-153 547.0 690 77.0
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 4.1e-153 546.6 857 62.7
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.1e-150 538.5 906 54.9
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 4.2e-150 536.6 806 60.5
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 9.4e-150 535.4 877 56.4
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 3.6e-149 533.5 906 55.0
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.9e-146 523.1 686 67.5
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.3e-143 515.0 651 81.7
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 1.2e-141 508.4 877 55.1
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 2.8e-141 507.3 733 64.0
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.3e-138 498.4 781 51.9
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 3.7e-130 470.3 627 66.3
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 9.2e-129 465.7 924 52.9
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 9.5e-126 455.7 926 50.5
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 8.9e-124 449.1 658 62.2
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.6e-120 438.3 907 46.2
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 2.3e-116 424.5 805 53.2
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.4e-115 420.6 851 56.5
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 7.6e-115 419.5 1034 35.0
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.0e-111 407.5 934 46.7
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.1e-105 389.0 650 72.3
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.3e-102 377.1 380 65.5
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 8.7e-95 352.8 635 44.1
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 8.1e-93 346.3 746 50.3
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 4.0e-92 344.0 931 48.0
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.1e-88 331.6 337 56.4
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-88 330.9 1297 30.0
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 1.8e-87 328.6 651 58.2
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 3.9e-87 327.4 486 48.4
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 3.7e-85 320.9 611 61.9
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 5.3e-76 290.4 272 68.4
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 5.9e-75 287.0 306 86.6
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.4e-57 229.2 155 74.2
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 6.7e-55 220.3 232 53.0
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.8e-37 161.0 197 47.2
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 5.2e-31 141.0 111 61.3
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 7.5e-30 137.1 90 74.4
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 1.3e-29 136.3 88 79.5
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 2.4e-28 132.1 119 58.8
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 4.6e-19 101.3 167 43.1
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 7.8e-11 73.9 59 55.9
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 3.9e-10 71.6 193 32.1
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 1.9e-09 69.3 239 67.8
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 1.6e-08 66.2 206 26.7


User provided reference genes

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