Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 3.4e-49 198.0 96 100.0
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 3.7e-40 167.9 95 84.2
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 2.9e-37 158.3 96 79.2
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 6.6e-37 157.1 92 82.6
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.9e-36 155.6 90 84.4
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.8e-35 151.8 97 76.3
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 3.6e-35 151.4 88 81.8
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 4.7e-35 151.0 91 80.2
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 3.1e-34 148.3 86 80.2
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 4.0e-34 147.9 97 74.2
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 8.9e-34 146.7 90 78.9
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 8.9e-34 146.7 97 71.1
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 8.9e-34 146.7 90 81.1
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.2e-33 146.4 92 75.0
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 5.8e-33 144.1 90 77.8
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 7.5e-33 143.7 97 78.4
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 7.5e-33 143.7 90 74.4
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 9.8e-33 143.3 91 74.7
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 9.8e-33 143.3 89 82.0
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.3e-32 142.9 88 78.4
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.3e-32 142.9 87 77.0
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.2e-32 142.1 87 77.0
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.9e-32 141.7 99 72.7
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.7e-32 141.4 99 71.7
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 4.9e-32 141.0 90 72.2
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 6.4e-32 140.6 103 69.9
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 8.3e-32 140.2 87 75.9
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.1e-31 139.8 90 71.1
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.4e-31 138.7 90 70.0
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 4.1e-31 137.9 90 70.0
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 4.1e-31 137.9 81 79.0
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 4.1e-31 137.9 99 69.7
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 4.1e-31 137.9 89 75.3
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 5.4e-31 137.5 90 70.0
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 7.0e-31 137.1 105 67.6
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.2e-31 136.7 99 69.7
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.2e-30 136.3 99 69.7
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.6e-30 136.0 89 73.0
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 2.0e-30 135.6 92 71.7
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.7e-30 135.2 90 74.4
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 2.7e-30 135.2 89 73.0
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 4.6e-30 134.4 90 73.3
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 4.6e-30 134.4 103 68.9
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 4.6e-30 134.4 89 71.9
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.0e-29 133.3 83 73.5
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 1.3e-29 132.9 91 70.3
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 1.3e-29 132.9 89 70.8
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.7e-29 132.5 88 71.6
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 2.3e-29 132.1 88 70.5
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 3.0e-29 131.7 89 71.9
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 3.0e-29 131.7 91 69.2
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 3.0e-29 131.7 96 69.8
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 3.9e-29 131.3 90 71.1
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 5.0e-29 131.0 83 74.7
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 5.0e-29 131.0 83 74.7
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 5.0e-29 131.0 83 74.7
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 6.6e-29 130.6 97 64.9
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 8.6e-29 130.2 89 69.7
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.1e-28 129.8 79 74.7
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.9e-28 129.0 77 80.5
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 3.3e-28 128.3 89 68.5
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 5.6e-28 127.5 79 75.9
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 7.3e-28 127.1 95 67.4
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.2e-27 126.3 96 65.6
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 1.2e-27 126.3 77 77.9
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 1.2e-27 126.3 77 77.9
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 1.2e-27 126.3 90 70.0
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 1.6e-27 125.9 98 63.3
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 1.6e-27 125.9 110 59.1
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.1e-27 125.6 90 67.8
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.1e-27 125.6 90 67.8
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 3.6e-27 124.8 81 74.1
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.6e-27 124.8 87 66.7
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 4.7e-27 124.4 85 70.6
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 6.2e-27 124.0 94 64.9
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 8.0e-27 123.6 89 68.5
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-26 123.2 88 67.0
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.1e-26 123.2 86 67.4
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.1e-26 123.2 86 67.4
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 1.1e-26 123.2 93 64.5
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.4e-26 122.9 92 63.0
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 1.8e-26 122.5 90 65.6
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 2.3e-26 122.1 82 74.4
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 2.3e-26 122.1 78 71.8
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 2.3e-26 122.1 78 71.8
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 3.1e-26 121.7 98 62.2
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 4.0e-26 121.3 93 63.4
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 4.0e-26 121.3 95 64.2
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 5.2e-26 120.9 88 65.9
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 5.2e-26 120.9 88 65.9
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 8.9e-26 120.2 95 63.2
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 8.9e-26 120.2 76 76.3
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 8.9e-26 120.2 87 69.0
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 8.9e-26 120.2 95 61.1
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 8.9e-26 120.2 94 62.8
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 1.2e-25 119.8 79 72.2
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.2e-25 119.8 94 63.8
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.2e-25 119.8 94 63.8
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 2.0e-25 119.0 74 75.7
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 2.6e-25 118.6 90 65.6
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 4.4e-25 117.9 99 59.6
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.3e-24 116.3 88 67.0
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.7e-24 115.9 100 58.0
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 1.7e-24 115.9 89 60.7
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 2.9e-24 115.2 91 62.6
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 3.7e-24 114.8 89 66.3
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 8.3e-24 113.6 81 67.9
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 8.3e-24 113.6 71 71.8
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 1.1e-23 113.2 72 72.2
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.4e-23 112.8 106 59.4
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.4e-23 112.1 64 79.7
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 3.2e-23 111.7 71 73.2
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.2e-23 111.7 78 69.2
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 4.1e-23 111.3 91 60.4
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 5.4e-23 110.9 71 73.2
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 5.4e-23 110.9 94 59.6
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 7.1e-23 110.5 83 65.1
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 9.2e-23 110.2 74 68.9
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 2.1e-22 109.0 69 72.5
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 2.1e-22 109.0 69 72.5
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.7e-22 108.6 81 65.4
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 3.5e-22 108.2 78 65.4
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 4.6e-22 107.8 76 68.4
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.6e-22 107.8 85 62.4
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 6.0e-22 107.5 64 76.6
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 6.0e-22 107.5 84 63.1
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 6.0e-22 107.5 73 72.6
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 7.8e-22 107.1 64 75.0
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.0e-21 106.7 78 64.1
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.7e-21 105.9 88 60.2
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 1.7e-21 105.9 67 77.6
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 2.5e-20 102.1 91 58.2
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 9.5e-20 100.1 91 54.9
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.2e-19 99.8 70 70.0
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 2.6e-17 92.0 70 60.0
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 2.6e-17 92.0 70 60.0
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.6e-17 92.0 61 73.8
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.4e-17 91.7 67 61.2
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 5.8e-17 90.9 87 56.3
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 1.7e-16 89.4 62 66.1
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 2.2e-16 89.0 99 48.5
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.9e-16 87.8 56 71.4
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.1e-15 86.7 87 55.2
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-15 86.7 56 69.6
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.4e-15 86.3 63 60.3
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.1e-15 84.7 56 67.9
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 7.1e-15 84.0 59 66.1
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.2e-14 83.2 74 52.7
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 4.6e-14 81.3 54 66.7
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 2.3e-13 79.0 114 40.4
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.9e-13 78.2 59 61.0
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 6.6e-13 77.4 42 83.3
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 8.1e-11 70.5 76 48.7
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.5e-09 66.2 60 45.0
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 2.0e-09 65.9 45 64.4
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 3.4e-09 65.1 78 42.3
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 1.2e-06 56.6 43 65.1
vmacro07903 Vaccinium macrocarpon HOM05D000278 ORTHO05D426903 4.6e-06 54.7 47 63.8


User provided reference genes

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