Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41739 Davidia involucrata HOM05D006728 ORTHO05D007911 0.0e+00 1552.7 787 100.0
Hma1.2p1_0705F.1_g206940 Hydrangea macrophylla HOM05D006728 ORTHO05D007911 3.6e-274 948.3 794 64.7
Actinidia23017 Actinidia chinensis HOM05D006728 ORTHO05D007911 1.3e-255 886.7 786 60.9
CSS0015483 Camellia sinensis var. sinensis HOM05D006728 ORTHO05D007911 3.3e-243 845.5 736 62.0
vmacro12473 Vaccinium macrocarpon HOM05D006728 ORTHO05D007911 6.2e-226 788.1 810 56.3
GSVIVG01012775001 Vitis vinifera HOM05D006728 ORTHO05D007911 6.9e-225 784.6 709 58.8
CiPaw.03G020000 Carya illinoinensis HOM05D006728 ORTHO05D007911 1.3e-218 763.8 798 54.5
Rhsim10G0109300 Rhododendron simsii HOM05D006728 ORTHO05D007911 2.0e-216 756.5 684 61.7
TAR381G1619 Trochodendron aralioides HOM05D006728 ORTHO05D007911 2.9e-215 752.7 801 53.4
QL09p005234 Quercus lobata HOM05D006728 ORTHO05D007911 1.1e-195 687.6 763 52.6
Haze_13898 Corylus avellana HOM05D006728 ORTHO05D007911 6.1e-189 665.2 782 52.2
MD15G1410500 Malus domestica HOM05D006728 ORTHO05D007911 2.6e-187 659.8 791 49.3
Manes.01G125500 Manihot esculenta HOM05D006728 ORTHO05D007911 1.1e-185 654.4 760 50.0
CAN.G102.5 Capsicum annuum HOM05D006728 ORTHO05D007911 4.2e-182 642.5 767 48.2
Gohir.D05G252600 Gossypium hirsutum HOM05D006728 ORTHO05D007911 5.5e-182 642.1 767 47.6
Gorai.009G264600 Gossypium raimondii HOM05D006728 ORTHO05D007911 1.6e-181 640.6 769 47.5
Sed0021340 Sechium edule HOM05D006728 ORTHO05D007911 1.4e-180 637.5 752 47.5
Potri.004G133900 Populus trichocarpa HOM05D006728 ORTHO05D007911 6.7e-180 635.2 760 47.8
PGSC0003DMG400009266 Solanum tuberosum HOM05D006728 ORTHO05D007911 1.2e-179 634.4 771 47.9
Sopen11g011050 Solanum pennellii HOM05D006728 ORTHO05D007911 1.3e-178 630.9 767 47.5
Nn1g02058 Nelumbo nucifera HOM05D006728 ORTHO05D007911 4.8e-178 629.0 797 47.3
Cc10_g10290 Coffea canephora HOM05D006728 ORTHO05D007911 4.1e-177 625.9 791 48.2
ClCG08G000330 Citrullus lanatus HOM05D006728 ORTHO05D007911 9.1e-177 624.8 743 47.8
Sabra04G0084300 Salix brachista HOM05D006728 ORTHO05D007911 3.5e-176 622.9 756 47.2
FAN08G1230 Fragaria x ananassa HOM05D006728 ORTHO05D007911 8.5e-175 618.2 758 48.3
Gohir.A05G251200 Gossypium hirsutum HOM05D006728 ORTHO05D007911 1.9e-174 617.1 749 47.0
FAN04G0014 Fragaria x ananassa HOM05D006728 ORTHO05D007911 3.6e-173 612.8 752 48.3
FvH4_5g32290 Fragaria vesca HOM05D006728 ORTHO05D007911 4.7e-173 612.5 758 48.3
FAN13G2633 Fragaria x ananassa HOM05D006728 ORTHO05D007911 1.0e-172 611.3 767 47.8
COL.COLO4_24796 Corchorus olitorius HOM05D006728 ORTHO05D007911 6.8e-172 608.6 760 45.7
Atru.chr13.2383 Acer truncatum HOM05D006728 ORTHO05D007911 1.5e-171 607.4 758 48.4
FAN18G3195 Fragaria x ananassa HOM05D006728 ORTHO05D007911 2.6e-171 606.7 758 48.0
Peaxi162Scf00391g00619 Petunia axillaris HOM05D006728 ORTHO05D007911 4.4e-171 605.9 750 49.2
RcHm_v2.0_Chr7g0228481 Rosa chinensis HOM05D006728 ORTHO05D007911 1.7e-170 604.0 778 47.2
Oeu051790.1 Olea europaea HOM05D006728 ORTHO05D007911 5.0e-167 592.4 757 46.8
CsaV3_5G040430 Cucumis sativus L. HOM05D006728 ORTHO05D007911 1.6e-165 587.4 743 45.9
Ciclev10004396m.g Citrus clementina HOM05D006728 ORTHO05D007911 4.7e-165 585.9 784 46.6
Nitab4.5_0000365g0060 Nicotiana tabacum HOM05D006728 ORTHO05D007911 8.9e-164 581.6 793 45.9
MSTRG.1553 Avicennia marina HOM05D006728 ORTHO05D007911 1.5e-163 580.9 764 46.3
MELO3C022215.2 Cucumis melo HOM05D006728 ORTHO05D007911 1.1e-161 574.7 745 45.6
Migut.C01293 Erythranthe guttata HOM05D006728 ORTHO05D007911 2.5e-158 563.5 768 45.6
SalBow7G3045 Salvia bowleyana HOM05D006728 ORTHO05D007911 2.3e-148 530.4 751 43.8
TWI59G0071 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 2.3e-148 530.4 751 42.2
Prupe.1G552000 Prunus persica HOM05D006728 ORTHO05D007911 2.6e-147 526.9 552 54.0
TWI23G0528 Tripterygium wilfordii HOM05D006728 ORTHO05D007911 7.0e-145 518.8 761 42.0
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 7.5e-139 498.8 734 42.9
Migut.J01202 Erythranthe guttata HOM05D006728 ORTHO05D007911 4.9e-138 496.1 651 47.2
Nitab4.5_0004437g0010 Nicotiana tabacum HOM05D006728 ORTHO05D007911 2.7e-136 490.3 672 44.6
PGR044G1487 Punica granatum HOM05D006728 ORTHO05D007911 2.8e-133 480.3 781 41.4
Eucgr.J01411 Eucalyptus grandis HOM05D006728 ORTHO05D007911 3.6e-133 479.9 657 42.9
THA.LOC104799928 Tarenaya hassleriana HOM05D006728 ORTHO05D007911 8.1e-133 478.8 801 39.0
HanXRQChr17g0559021 Helianthus annuus HOM05D006728 ORTHO05D007911 1.2e-131 474.9 773 40.2
DCAR_011523 Daucus carota HOM05D006728 ORTHO05D007911 2.6e-131 473.8 802 40.9
ECA232G4554 Erigeron canadensis HOM05D006728 ORTHO05D007911 3.4e-131 473.4 762 40.4
Lsat_1_v5_gn_4_133160 Lactuca sativa HOM05D006728 ORTHO05D007911 9.2e-129 465.3 766 39.9
unitig_749.g13882 Utricularia gibba HOM05D006728 ORTHO05D007911 3.5e-120 436.8 763 38.3
Lalb_Chr21g0312581 Lupinus albus HOM05D006728 ORTHO05D007911 2.0e-115 421.0 722 40.0
Thecc.03G072600 Theobroma cacao HOM05D006728 ORTHO05D007911 4.5e-115 419.9 479 49.9
Glyma.02G174700 Glycine max HOM05D006728 ORTHO05D007911 5.8e-115 419.5 709 40.5
PSO144G0035 Papaver somniferum HOM05D006728 ORTHO05D007911 1.9e-113 414.5 753 37.7
Solyc11g020910.3 Solanum lycopersicum HOM05D006728 ORTHO05D007911 2.1e-112 411.0 518 45.9
Psat6g140120 Pisum sativum HOM05D006728 ORTHO05D007911 1.5e-110 404.8 712 38.5
Ca_09788_v3 Cicer arietinum L. HOM05D006728 ORTHO05D007911 8.1e-109 399.1 712 39.0
VMungo0720G2132 Vigna mungo HOM05D006728 ORTHO05D007911 5.8e-107 392.9 704 38.8
Phvul.L001685 Phaseolus vulgaris HOM05D006728 ORTHO05D007911 3.8e-106 390.2 706 38.0
CARHR235190 Cardamine hirsuta HOM05D006728 ORTHO05D007911 6.4e-106 389.4 782 37.7
Cpa.g.c30412.3 Carica papaya HOM05D006728 ORTHO05D007911 1.9e-105 387.9 488 48.2
Aqoxy7G02767 Aquilegia oxysepala HOM05D006728 ORTHO05D007911 2.7e-104 384.0 768 38.2
Aa31LG5G9990 Aethionema arabicum HOM05D006728 ORTHO05D007911 3.0e-103 380.6 836 34.8
PSO325G0011 Papaver somniferum HOM05D006728 ORTHO05D007911 6.7e-103 379.4 753 36.5
Medtr1g072850 Medicago truncatula HOM05D006728 ORTHO05D007911 3.3e-102 377.1 706 38.1
AT4G27510 Arabidopsis thaliana HOM05D006728 ORTHO05D007911 5.6e-102 376.3 786 35.9
Sp7g25450 Schrenkiella parvula HOM05D006728 ORTHO05D007911 9.6e-102 375.6 788 36.7
Glyma.10G191500 Glycine max HOM05D006728 ORTHO05D007911 1.6e-101 374.8 588 41.0
Lj5g0018420 Lotus japonicus HOM05D006728 ORTHO05D007911 1.2e-99 368.6 683 39.4
ATR0487G015 Amborella trichopoda HOM05D006728 ORTHO05D007911 8.4e-98 362.5 713 35.2
BolC1t02321H Brassica oleracea HOM05D006728 ORTHO05D007911 1.1e-97 362.1 776 35.8
C01p23690 Brassica napus HOM05D006728 ORTHO05D007911 1.4e-97 361.7 776 35.7
SHI29298 Sapria himalayana HOM05D006728 ORTHO05D007911 6.7e-95 352.8 622 37.6
A01p18730 Brassica napus HOM05D006728 ORTHO05D007911 7.4e-94 349.4 781 35.1
Thhalv10024534m.g Eutrema salsugineum HOM05D006728 ORTHO05D007911 7.4e-94 349.4 789 35.1
TPR.G18562 Trifolium pratense HOM05D006728 ORTHO05D007911 4.8e-93 346.7 734 35.3
BraA01t01819Z Brassica rapa HOM05D006728 ORTHO05D007911 1.1e-92 345.5 791 35.4
Nn3g16574 Nelumbo nucifera HOM05D006728 ORTHO05D007911 2.1e-88 331.3 795 33.1
PSO325G0006 Papaver somniferum HOM05D006728 ORTHO05D007911 4.6e-88 330.1 604 39.2
arahy.Tifrunner.gnm1.ann1.2Y318K Arachis hypogaea HOM05D006728 ORTHO05D007911 1.8e-87 328.2 735 35.4
Carub.0007s1334 Capsella rubella HOM05D006728 ORTHO05D007911 2.5e-86 324.3 790 33.4
PSO170G3307 Papaver somniferum HOM05D006728 ORTHO05D007911 4.1e-84 317.0 752 33.2
Sc24g0002590 Simmondsia chinensis HOM05D006728 ORTHO05D007911 7.2e-81 306.2 767 32.9
Atru.chr1.2802 Acer truncatum HOM05D006728 ORTHO05D007911 1.6e-80 305.1 362 49.2
BcaNung07241 Brassica carinata HOM05D006728 ORTHO05D007911 2.8e-77 294.3 768 32.6
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 9.1e-76 289.3 762 32.8
Hund02381 Selenicereus undatus HOM05D006728 ORTHO05D007911 1.5e-75 288.5 746 33.2
arahy.Tifrunner.gnm1.ann1.PFS1J6 Arachis hypogaea HOM05D006728 ORTHO05D007911 3.5e-75 287.3 550 37.3
arahy.Tifrunner.gnm1.ann1.HTR7VF Arachis hypogaea HOM05D006728 ORTHO05D007911 1.7e-74 285.0 551 37.7
arahy.Tifrunner.gnm1.ann1.SM6YYV Arachis hypogaea HOM05D006728 ORTHO05D007911 8.5e-74 282.7 545 37.4
EL10Ac7g16629 Beta vulgaris HOM05D006728 ORTHO05D007911 4.2e-73 280.4 734 32.8
AUR62036525 Chenopodium quinoa HOM05D006728 ORTHO05D007911 8.2e-69 266.2 600 34.5
PSO170G3890 Papaver somniferum HOM05D006728 ORTHO05D007911 2.7e-51 208.0 417 36.7
Cpa.g.c34985.1 Carica papaya HOM05D006728 ORTHO05D007911 1.8e-39 168.7 250 40.8
HPP92_000129 Vanilla planifolia HOM05D006728 ORTHO05D007911 4.0e-39 167.5 700 25.3
SEGI_13662 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 1.3e-37 162.5 746 26.4
arahy.Tifrunner.gnm1.ann1.G54CSB Arachis hypogaea HOM05D006728 ORTHO05D007911 6.0e-35 153.7 300 38.7
Atru.chr1.2803 Acer truncatum HOM05D006728 ORTHO05D007911 2.4e-28 131.7 140 51.4
Cfa008144 Carpinus fangiana HOM05D006728 ORTHO05D007911 2.1e-27 128.6 102 65.7
Os02g0461200 Oryza sativa ssp. japonica HOM05D006728 ORTHO05D007911 2.3e-26 125.2 555 26.3
TPR.G18439 Trifolium pratense HOM05D006728 ORTHO05D007911 1.6e-24 119.0 128 50.8
Zm00001eb295040 Zea mays HOM05D006728 ORTHO05D007911 6.8e-23 113.6 566 25.4
Prupe.8G015600 Prunus persica HOM05D025481 ORTHO05D007911 1.7e-21 109.0 331 32.0
CDE05G2798 Ceratophyllum demersum HOM05D006728 ORTHO05D007911 1.1e-17 96.3 134 45.5
Glyma.20G198732 Glycine max HOM05D006728 ORTHO05D007911 2.4e-15 88.6 151 39.7
Glyma.20G198666 Glycine max HOM05D006728 ORTHO05D007911 1.2e-14 86.3 176 37.5
RcHm_v2.0_Chr5g0040361 Rosa chinensis HOM05D006728 ORTHO05D007911 7.1e-12 77.0 100 48.0
SHI29297 Sapria himalayana HOM05D006728 ORTHO05D007911 1.3e-10 72.8 73 50.7
SEGI_13134 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 4.3e-09 67.8 313 27.8
SEGI_31214 Sequoiadendron giganteum HOM05D013057 ORTHO05D007911 9.9e-06 56.6 105 32.4


User provided reference genes

Program Settings