Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 8.2e-92 340.5 188 100.0
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 3.4e-53 212.2 192 62.0
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 4.4e-53 211.8 195 62.6
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 1.2e-45 187.2 210 56.7
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 1.2e-42 177.2 197 55.8
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.6e-42 176.8 192 57.3
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 7.3e-40 167.9 211 52.6
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 7.3e-40 167.9 194 51.0
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 9.5e-40 167.5 191 54.5
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.6e-39 166.8 134 64.2
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 6.2e-39 164.9 198 50.5
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.8e-38 163.3 201 49.8
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 4.0e-38 162.2 196 55.6
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 8.9e-38 161.0 197 49.7
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.5e-37 160.2 187 47.1
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.0e-37 159.8 182 48.4
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 3.4e-37 159.1 194 49.5
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 4.4e-37 158.7 140 60.0
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 5.8e-37 158.3 140 60.0
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.3e-36 157.1 194 45.4
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 3.7e-36 155.6 180 47.2
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 1.4e-35 153.7 189 49.2
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.4e-35 153.7 201 48.8
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 4.1e-35 152.1 141 58.9
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 5.4e-35 151.8 196 53.1
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 7.1e-35 151.4 194 47.9
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 9.2e-35 151.0 197 48.7
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 9.2e-35 151.0 192 50.0
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 9.2e-35 151.0 143 58.0
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 1.6e-34 150.2 192 46.4
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.6e-34 150.2 147 55.1
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 3.5e-34 149.1 199 47.2
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 4.6e-34 148.7 141 56.7
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 6.0e-34 148.3 137 60.6
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 7.8e-34 147.9 194 52.6
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.0e-33 147.5 141 56.7
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 2.3e-33 146.4 194 47.4
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 3.0e-33 146.0 184 56.5
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 3.9e-33 145.6 184 50.0
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 6.6e-33 144.8 126 61.1
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 6.6e-33 144.8 123 57.7
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 1.9e-32 143.3 197 49.7
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 5.6e-32 141.7 137 55.5
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 9.5e-32 141.0 147 53.7
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.2e-31 140.6 202 45.0
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 2.1e-31 139.8 194 43.3
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 2.8e-31 139.4 142 54.2
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 2.8e-31 139.4 156 54.5
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 2.8e-31 139.4 144 52.8
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 4.7e-31 138.7 133 54.9
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 2.4e-30 136.3 144 52.8
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 6.8e-30 134.8 134 53.0
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.0e-29 133.3 203 46.3
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 2.6e-29 132.9 138 51.4
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 7.6e-29 131.3 151 48.3
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 7.6e-29 131.3 199 48.7
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.7e-28 130.2 139 48.2
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 2.2e-28 129.8 166 49.4
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 2.2e-28 129.8 204 44.6
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.9e-28 129.4 142 54.9
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 6.4e-28 128.3 176 45.5
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 3.2e-27 125.9 127 52.8
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 3.2e-27 125.9 167 44.9
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 4.1e-27 125.6 149 50.3
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 1.6e-26 123.6 110 60.0
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 1.6e-26 123.6 174 43.1
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 3.5e-26 122.5 138 50.0
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 3.5e-26 122.5 152 48.0
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 1.7e-25 120.2 126 50.0
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.7e-25 120.2 131 47.3
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 1.7e-25 120.2 153 51.6
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 3.9e-25 119.0 154 46.1
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 3.9e-25 119.0 189 39.2
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 3.9e-25 119.0 152 46.7
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 6.6e-25 118.2 111 56.8
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 1.1e-24 117.5 140 49.3
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 1.5e-24 117.1 134 47.0
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.9e-24 116.7 138 45.7
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 2.5e-24 116.3 148 46.6
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 4.3e-24 115.5 147 50.3
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 4.3e-24 115.5 147 45.6
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 5.6e-24 115.2 137 49.6
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 7.3e-24 114.8 141 51.1
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 7.3e-24 114.8 140 48.6
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.2e-23 114.0 171 42.1
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 2.8e-23 112.8 143 47.6
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 1.1e-22 110.9 126 51.6
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 1.4e-22 110.5 135 51.1
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 1.8e-22 110.2 137 46.7
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 5.2e-22 108.6 139 46.0
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.5e-21 107.1 180 42.2
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 2.0e-21 106.7 151 43.7
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.6e-21 106.3 133 44.4
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 2.6e-21 106.3 137 48.2
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.9e-21 104.4 133 42.1
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 9.9e-21 104.4 133 42.1
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 1.7e-20 103.6 149 44.3
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 2.2e-20 103.2 179 41.3
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 3.8e-20 102.4 146 44.5
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 4.9e-20 102.1 141 41.8
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 4.9e-20 102.1 141 41.8
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 6.4e-20 101.7 142 43.0
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 8.4e-20 101.3 145 44.8
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.1e-19 100.9 154 43.5
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.4e-19 100.5 131 46.6
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.9e-19 100.1 130 49.2
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 4.2e-19 99.0 155 42.6
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.2e-19 99.0 161 41.6
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 5.4e-19 98.6 148 41.2
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 7.1e-19 98.2 144 42.4
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 1.6e-18 97.1 144 45.1
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.6e-18 97.1 144 45.1
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.6e-18 97.1 144 45.1
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 2.7e-18 96.3 156 37.8
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 2.7e-18 96.3 143 46.2
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 3.5e-18 95.9 168 39.9
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 3.5e-18 95.9 147 38.8
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 3.5e-18 95.9 150 40.7
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 4.6e-18 95.5 145 40.0
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 4.6e-18 95.5 145 40.0
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 4.6e-18 95.5 145 40.0
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 4.6e-18 95.5 129 45.7
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 7.8e-18 94.7 155 41.3
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 1.7e-17 93.6 138 47.1
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 3.9e-17 92.4 128 46.1
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 6.6e-17 91.7 139 41.7
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 6.6e-17 91.7 138 42.0
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 2.5e-16 89.7 141 41.1
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 1.6e-15 87.0 137 40.1
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 1.6e-15 87.0 137 40.1
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 2.4e-14 83.2 198 30.8
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 5.3e-14 82.0 133 41.4
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 9.0e-14 81.3 115 44.3
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.2e-13 80.9 149 38.3
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.3e-12 77.4 96 46.9
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 2.2e-12 76.6 160 37.5
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 2.2e-12 76.6 113 46.9
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 3.8e-12 75.9 157 36.9
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.2e-11 72.4 53 67.9
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 9.3e-11 71.2 49 63.3
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 6.0e-10 68.6 91 44.0
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.0e-09 67.8 164 34.1
HPP92_003138 Vanilla planifolia HOM05D005065 ORTHO05D005944 6.7e-09 65.1 142 35.9
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 8.1e-07 58.2 142 32.4
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 2.4e-06 56.6 146 32.9
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 3.1e-06 56.2 145 33.8
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 4.0e-06 55.8 145 35.2


User provided reference genes

Program Settings