Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.8e-93 345.9 172 100.0
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 1.1e-87 326.6 170 94.1
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 4.3e-79 298.1 169 84.0
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 7.3e-79 297.4 169 82.2
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 7.3e-79 297.4 169 83.4
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.6e-78 296.2 169 84.0
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 3.6e-78 295.0 170 82.4
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 6.2e-78 294.3 169 84.0
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.4e-77 293.1 167 84.4
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.4e-77 293.1 169 82.8
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.4e-77 293.1 167 82.6
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 5.2e-77 291.2 166 84.9
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 6.8e-77 290.8 169 82.2
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 8.9e-77 290.4 169 82.2
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.5e-76 289.7 170 81.8
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.5e-76 289.7 166 81.9
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 3.4e-76 288.5 169 81.1
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 4.4e-76 288.1 169 80.5
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 5.8e-76 287.7 166 83.1
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 5.8e-76 287.7 167 82.0
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 7.5e-76 287.3 167 80.8
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 7.5e-76 287.3 169 79.3
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.3e-75 286.6 187 75.9
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.3e-75 286.6 167 80.8
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 3.7e-75 285.0 167 78.4
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 8.3e-75 283.9 167 78.4
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 4.1e-74 281.6 169 77.5
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 4.1e-74 281.6 169 78.7
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 5.4e-74 281.2 166 79.5
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 7.1e-74 280.8 170 77.1
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 9.2e-74 280.4 166 80.1
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 9.2e-74 280.4 167 80.2
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 3.5e-73 278.5 168 78.6
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 4.6e-73 278.1 169 77.5
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 4.6e-73 278.1 166 78.9
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 4.6e-73 278.1 167 79.6
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 4.6e-73 278.1 166 79.5
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 7.8e-73 277.3 169 77.5
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 7.8e-73 277.3 168 78.6
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.0e-72 276.9 166 80.7
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 1.0e-72 276.9 169 77.5
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 1.7e-72 276.2 169 76.3
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.7e-72 276.2 168 78.6
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 3.0e-72 275.4 168 78.6
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 3.0e-72 275.4 172 79.1
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 3.0e-72 275.4 166 78.9
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 3.0e-72 275.4 166 78.3
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 3.9e-72 275.0 168 76.2
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 3.9e-72 275.0 169 76.3
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 5.1e-72 274.6 169 75.7
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 5.1e-72 274.6 168 77.4
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 8.6e-72 273.9 167 76.0
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 8.6e-72 273.9 167 75.4
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 8.6e-72 273.9 166 77.1
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 1.1e-71 273.5 166 78.3
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 1.5e-71 273.1 167 76.0
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 2.5e-71 272.3 167 77.2
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 3.3e-71 271.9 169 75.7
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 3.3e-71 271.9 166 80.1
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.3e-71 271.6 167 74.9
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.3e-71 271.6 167 74.9
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 5.6e-71 271.2 169 75.1
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 7.3e-71 270.8 168 75.6
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 2.1e-70 269.2 167 76.0
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 2.8e-70 268.9 168 73.8
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 3.6e-70 268.5 169 76.3
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 6.2e-70 267.7 168 75.6
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 8.1e-70 267.3 167 76.0
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 4.0e-69 265.0 170 75.9
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 5.2e-69 264.6 168 75.6
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 6.8e-69 264.2 188 68.6
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 1.3e-67 260.0 166 73.5
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 1.7e-67 259.6 170 71.8
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 2.9e-67 258.8 170 71.2
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 3.8e-67 258.5 170 71.2
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 4.9e-67 258.1 170 71.2
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 4.9e-67 258.1 170 71.2
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 4.9e-67 258.1 170 71.2
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 6.4e-67 257.7 170 70.6
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 6.4e-67 257.7 170 71.2
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 6.4e-67 257.7 170 70.6
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.1e-66 256.9 170 70.6
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.1e-66 256.9 170 71.2
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.4e-66 256.5 166 72.9
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.9e-66 256.1 169 71.0
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 2.4e-66 255.8 170 70.6
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 5.4e-66 254.6 170 70.6
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.2e-65 253.4 164 73.2
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.6e-65 253.1 170 70.6
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 2.1e-65 252.7 170 70.6
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 1.7e-64 249.6 168 72.6
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 5.1e-64 248.1 169 72.8
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 1.9e-63 246.1 176 66.5
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 6.2e-62 241.1 167 67.1
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 6.2e-62 241.1 166 69.9
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 8.1e-62 240.7 166 69.3
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 5.2e-61 238.0 168 67.9
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 2.0e-60 236.1 164 66.5
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 2.0e-60 236.1 139 82.0
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 4.9e-59 231.5 232 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 6.0e-57 224.6 164 62.8
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 2.3e-56 222.6 164 64.6
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.5e-55 219.9 164 64.0
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.3e-54 216.9 164 61.6
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 3.6e-54 215.3 170 62.9
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 4.8e-54 214.9 134 73.9
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 1.6e-49 199.9 168 60.1
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.0e-48 197.2 118 78.8
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 4.3e-47 191.8 156 61.5
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 4.8e-46 188.3 118 75.4
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 1.1e-45 187.2 117 77.8
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 9.0e-45 184.1 104 80.8
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 1.6e-41 173.3 123 66.7
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 1.6e-41 173.3 123 66.7
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 3.4e-36 155.6 171 46.2
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 4.5e-36 155.2 140 54.3
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.3e-32 143.7 166 46.4
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 8.2e-30 134.4 166 45.8
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.9e-26 123.2 182 39.6
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.9e-26 123.2 182 39.6
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 5.9e-20 101.7 56 83.9
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 1.3e-19 100.5 89 56.2
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 5.5e-18 95.1 65 67.7
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.6e-17 93.6 165 35.8
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 3.6e-17 92.4 65 67.7
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 8.8e-16 87.8 73 61.6
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 8.8e-16 87.8 58 69.0
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 1.7e-14 83.6 65 64.6
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 1.4e-10 70.5 55 67.3
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.2e-09 67.4 135 37.8
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 2.1e-09 66.6 33 93.9
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 2.1e-09 66.6 33 93.9
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 6.1e-09 65.1 36 72.2
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 3.0e-08 62.8 41 78.0
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 3.9e-08 62.4 50 58.0
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 6.7e-08 61.6 33 84.8
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 1.7e-06 57.0 40 57.5


User provided reference genes

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