Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 4.7e-53 211.1 117 100.0
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 8.9e-28 127.1 93 75.3
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 2.6e-27 125.6 93 78.5
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 3.7e-26 121.7 93 81.7
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 7.0e-25 117.5 95 72.6
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 1.2e-24 116.7 93 69.9
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 1.7e-23 112.8 93 71.0
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 5.0e-23 111.3 95 70.5
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 5.0e-23 111.3 95 74.7
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 6.6e-23 110.9 88 72.7
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 8.6e-23 110.5 97 69.1
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.5e-22 109.0 93 69.9
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.4e-20 103.2 92 67.4
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 1.8e-20 102.8 96 61.5
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 5.2e-20 101.3 96 65.6
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 8.9e-20 100.5 93 62.4
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 2.0e-19 99.4 94 67.0
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 3.4e-19 98.6 94 64.9
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 3.4e-19 98.6 94 64.9
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 5.8e-19 97.8 95 65.3
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 7.5e-19 97.4 96 60.4
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 1.3e-18 96.7 95 64.2
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 1.7e-18 96.3 103 63.1
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.7e-18 96.3 93 62.4
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 2.9e-18 95.5 96 60.4
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 3.7e-18 95.1 94 64.9
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.7e-18 95.1 96 61.5
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 4.9e-18 94.7 93 63.4
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 4.9e-18 94.7 96 62.5
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 6.4e-18 94.4 95 63.2
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 6.4e-18 94.4 93 62.4
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.1e-17 93.6 100 63.0
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 1.1e-17 93.6 97 64.9
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 1.4e-17 93.2 93 59.1
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 1.4e-17 93.2 94 61.7
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 1.9e-17 92.8 96 62.5
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 9.2e-17 90.5 93 61.3
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 3.5e-16 88.6 94 64.9
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 6.0e-16 87.8 93 61.3
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 6.0e-16 87.8 93 61.3
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 6.0e-16 87.8 94 59.6
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 3.0e-15 85.5 93 63.4
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 3.9e-15 85.1 94 56.4
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 3.9e-15 85.1 97 56.7
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 6.6e-15 84.3 106 56.6
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 8.6e-15 84.0 94 59.6
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.9e-14 82.8 96 56.2
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 1.9e-14 82.8 94 57.4
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.9e-14 82.8 96 56.2
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 2.5e-14 82.4 92 59.8
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.3e-14 82.0 94 58.5
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 3.3e-14 82.0 93 57.0
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 7.3e-14 80.9 94 55.3
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 9.5e-14 80.5 93 53.8
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 9.5e-14 80.5 95 54.7
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 9.5e-14 80.5 93 51.6
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 9.5e-14 80.5 94 57.4
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 9.5e-14 80.5 95 63.2
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 1.6e-13 79.7 97 59.8
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 1.6e-13 79.7 96 58.3
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 2.1e-13 79.3 93 55.9
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 2.8e-13 79.0 97 57.7
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 3.6e-13 78.6 93 52.7
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 3.6e-13 78.6 95 56.8
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 3.6e-13 78.6 94 59.6
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 4.7e-13 78.2 95 53.7
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 6.2e-13 77.8 93 51.6
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 8.1e-13 77.4 97 53.6
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 1.1e-12 77.0 92 52.2
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 1.8e-12 76.3 94 55.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 3.1e-12 75.5 91 50.5
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 3.1e-12 75.5 93 54.8
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 4.0e-12 75.1 54 74.1
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 5.2e-12 74.7 95 58.9
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 8.9e-12 73.9 94 54.3
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 1.5e-11 73.2 65 63.1
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 1.5e-11 73.2 92 51.1
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 2.0e-11 72.8 91 52.7
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 2.6e-11 72.4 93 51.6
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 2.6e-11 72.4 96 47.9
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 2.6e-11 72.4 93 51.6
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 2.6e-11 72.4 93 50.5
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 2.6e-11 72.4 92 50.0
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 4.4e-11 71.6 93 51.6
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 5.8e-11 71.2 92 53.3
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 9.9e-11 70.5 92 53.3
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 1.3e-10 70.1 94 51.1
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 1.3e-10 70.1 93 55.9
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 1.7e-10 69.7 92 52.2
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 1.7e-10 69.7 94 51.1
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 1.7e-10 69.7 94 51.1
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 1.7e-10 69.7 90 55.6
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 1.7e-10 69.7 95 54.7
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 4.9e-10 68.2 94 50.0
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 4.9e-10 68.2 94 50.0
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 8.3e-10 67.4 92 52.2
Actinidia20387 Actinidia chinensis HOM05D007491 ORTHO05D009489 1.1e-09 67.0 93 53.8
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 4.1e-09 65.1 94 47.9
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 2.1e-08 62.8 96 47.9
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 2.7e-08 62.4 92 50.0
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 7.8e-08 60.8 85 48.2
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 1.7e-07 59.7 50 60.0
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 1.7e-07 59.7 93 44.1
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 1.5e-06 56.6 82 48.8
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.9e-06 56.2 76 43.4
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 4.3e-06 55.1 103 40.8
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 5.6e-06 54.7 83 43.4
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 5.6e-06 54.7 53 54.7


User provided reference genes

Program Settings