Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41561 Davidia involucrata HOM05D003720 ORTHO05D017820 7.4e-65 250.4 124 100.0
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 9.4e-28 127.1 79 81.0
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 3.3e-25 118.6 79 77.2
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 2.8e-24 115.5 79 68.4
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 4.8e-24 114.8 79 68.4
CSS0041174 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 4.8e-24 114.8 79 68.4
Nitab4.5_0002116g0020 Nicotiana tabacum HOM05D003720 ORTHO05D017820 2.4e-23 112.5 76 69.7
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 5.3e-23 111.3 79 67.1
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 9.1e-23 110.5 79 67.1
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 1.2e-22 110.2 79 68.4
Nitab4.5_0000237g0010 Nicotiana tabacum HOM05D003720 ORTHO05D005312 1.2e-22 110.2 76 68.4
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 1.6e-22 109.8 74 68.9
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.6e-22 109.8 79 68.4
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.6e-22 109.8 79 68.4
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 1.6e-22 109.8 79 67.1
Actinidia26424 Actinidia chinensis HOM05D003720 ORTHO05D005312 2.0e-22 109.4 74 67.6
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 2.7e-22 109.0 77 67.5
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 3.5e-22 108.6 81 69.1
Solyc08g021920.4 Solanum lycopersicum HOM05D003720 ORTHO05D005312 3.5e-22 108.6 79 65.8
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 4.5e-22 108.2 79 67.1
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 4.5e-22 108.2 77 67.5
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 4.5e-22 108.2 77 67.5
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 4.5e-22 108.2 79 68.4
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 1.0e-21 107.1 79 64.6
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 2.9e-21 105.5 81 65.4
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 3.8e-21 105.1 80 67.5
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 3.8e-21 105.1 76 67.1
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 5.0e-21 104.8 80 67.5
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 5.0e-21 104.8 79 63.3
Peaxi162Scf00256g00812 Petunia axillaris HOM05D003720 ORTHO05D017820 6.5e-21 104.4 79 65.8
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 1.1e-20 103.6 79 64.6
Gohir.A06G060200 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.5e-20 103.2 80 67.5
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 2.5e-20 102.4 80 66.2
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 2.5e-20 102.4 73 64.4
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 4.2e-20 101.7 75 68.0
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 4.2e-20 101.7 75 68.0
Hma1.2p1_0245F.1_g101400 Hydrangea macrophylla HOM05D003720 ORTHO05D005312 5.5e-20 101.3 76 68.4
TAR374G0606 Trochodendron aralioides HOM05D003720 ORTHO05D017820 5.5e-20 101.3 96 56.2
TAR626G1854 Trochodendron aralioides HOM05D003720 ORTHO05D005312 9.4e-20 100.5 75 64.0
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 1.6e-19 99.8 76 64.5
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 1.6e-19 99.8 76 64.5
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 1.6e-19 99.8 79 69.6
Gohir.D05G022400 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.1e-19 99.4 84 60.7
GSVIVG01015442001 Vitis vinifera HOM05D003720 ORTHO05D005312 2.1e-19 99.4 75 62.7
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 2.7e-19 99.0 77 66.2
Atru.chr7.1285 Acer truncatum HOM05D003720 ORTHO05D005312 4.7e-19 98.2 80 63.8
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 4.7e-19 98.2 77 64.9
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 6.1e-19 97.8 77 67.5
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 8.0e-19 97.4 82 59.8
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 1.4e-18 96.7 74 64.9
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 1.4e-18 96.7 74 64.9
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 1.4e-18 96.7 84 59.5
COL.COLO4_34941 Corchorus olitorius HOM05D003720 ORTHO05D005312 1.8e-18 96.3 73 67.1
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 2.3e-18 95.9 73 63.0
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 4.0e-18 95.1 67 71.6
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 6.8e-18 94.4 75 62.7
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 6.8e-18 94.4 69 68.1
Os10g0575200 Oryza sativa ssp. japonica HOM05D003720 ORTHO05D005312 6.8e-18 94.4 65 67.7
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 6.8e-18 94.4 78 64.1
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 6.8e-18 94.4 76 60.5
HPP92_014850 Vanilla planifolia HOM05D003720 ORTHO05D005312 8.8e-18 94.0 79 59.5
Cpa.g.sc23.157 Carica papaya HOM05D003720 ORTHO05D005312 1.5e-17 93.2 80 60.0
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 1.5e-17 93.2 74 63.5
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 1.5e-17 93.2 73 65.8
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 1.5e-17 93.2 77 63.6
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 1.5e-17 93.2 75 60.0
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 1.5e-17 93.2 77 63.6
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 2.0e-17 92.8 76 65.8
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 2.0e-17 92.8 79 64.6
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 3.4e-17 92.0 74 62.2
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 5.7e-17 91.3 77 62.3
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 5.7e-17 91.3 78 60.3
SEGI_35777 Sequoiadendron giganteum HOM05D003720 ORTHO05D005312 9.8e-17 90.5 70 61.4
Hund12706 Selenicereus undatus HOM05D003720 ORTHO05D005312 1.7e-16 89.7 75 62.7
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 1.7e-16 89.7 72 62.5
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 2.8e-16 89.0 80 61.2
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 4.8e-16 88.2 63 68.3
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 4.8e-16 88.2 63 68.3
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 8.3e-16 87.4 58 70.7
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 1.1e-15 87.0 77 58.4
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 1.8e-15 86.3 77 59.7
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 4.1e-15 85.1 64 68.8
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 5.4e-15 84.7 76 57.9
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 5.4e-15 84.7 66 62.1
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 7.0e-15 84.3 76 56.6
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 9.1e-15 84.0 76 56.6
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 1.2e-14 83.6 74 62.2
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 1.6e-14 83.2 63 65.1
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 5.9e-14 81.3 68 64.7
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 1.3e-13 80.1 65 64.6
Lj7C641G5 Lonicera japonica HOM05D003720 ORTHO05D005312 2.2e-13 79.3 52 73.1
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 2.9e-13 79.0 79 57.0
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 3.8e-13 78.6 66 57.6
unitig_22.g6633 Utricularia gibba HOM05D003720 ORTHO05D017820 3.8e-13 78.6 50 74.0
CDE06G2493 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 5.0e-13 78.2 54 64.8
CDE07G0366 Ceratophyllum demersum HOM05D003720 ORTHO05D017820 5.0e-13 78.2 54 64.8
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 5.0e-13 78.2 80 51.2
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 6.5e-13 77.8 79 51.9
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 1.1e-12 77.0 58 63.8
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 1.5e-12 76.6 54 66.7
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 3.2e-12 75.5 54 64.8
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 3.2e-12 75.5 58 62.1
CARHR119040 Cardamine hirsuta HOM05D003720 ORTHO05D005312 5.5e-12 74.7 67 58.2
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 7.2e-12 74.3 54 64.8
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 7.2e-12 74.3 54 64.8
Sp4g08590 Schrenkiella parvula HOM05D003720 ORTHO05D005312 7.2e-12 74.3 58 62.1
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 1.2e-11 73.6 73 53.4
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 3.6e-11 72.0 66 53.0
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 3.6e-11 72.0 58 56.9
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 6.1e-11 71.2 59 62.7
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 6.1e-11 71.2 59 62.7
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 6.1e-11 71.2 59 62.7
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 6.1e-11 71.2 59 62.7
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 6.1e-11 71.2 58 63.8
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 1.8e-07 59.7 39 64.1
FvH4_5g24770 Fragaria vesca HOM05D067251 ORTHO05D017820 5.9e-06 54.7 45 64.4


User provided reference genes

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